Wall clock time and date at job start Sun Mar 7 2021 02:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.46751 * 2 1 4 4 C 1.50700 * 109.47081 * 120.00077 * 2 1 3 5 5 C 1.38349 * 120.34956 * 65.00304 * 4 2 1 6 6 C 1.40030 * 118.28841 * 179.97438 * 5 4 2 7 7 C 1.47833 * 120.55867 * 180.02562 * 6 5 4 8 8 O 1.21554 * 120.00274 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00116 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00177 * 180.02562 * 9 7 6 11 11 H 1.08993 * 112.85132 * 23.80107 * 10 9 7 12 12 C 1.53784 * 113.61391 * 155.00155 * 10 9 7 13 13 C 1.53787 * 87.07992 * 140.06505 * 12 10 9 14 14 H 1.08997 * 113.61774 * 89.19917 * 13 12 10 15 15 C 1.52995 * 113.61095 * 220.01981 * 13 12 10 16 16 N 1.46500 * 109.47185 * 183.46994 * 15 13 12 17 17 C 1.34947 * 126.04040 * 125.00042 * 16 15 13 18 18 C 1.35311 * 107.75028 * 180.02562 * 17 16 15 19 19 C 1.39876 * 107.91749 * 359.97438 * 18 17 16 20 20 N 1.30834 * 108.20073 * 0.27043 * 19 18 17 21 21 C 1.53784 * 87.17074 * 334.60625 * 13 12 10 22 22 C 1.39518 * 118.88115 * 0.27093 * 6 5 4 23 23 N 1.31701 * 120.56379 * 359.45736 * 22 6 5 24 24 C 1.31924 * 121.87990 * 0.53737 * 23 22 6 25 25 H 0.96702 * 114.00203 * 60.00313 * 1 2 3 26 26 H 1.09000 * 109.47466 * 240.00187 * 2 1 3 27 27 H 1.48505 * 110.00118 * 60.00115 * 3 2 1 28 28 H 1.48501 * 109.99966 * 181.31732 * 3 2 1 29 29 H 1.08005 * 120.85568 * 359.95710 * 5 4 2 30 30 H 0.96995 * 120.00043 * 359.97438 * 9 7 6 31 31 H 1.08996 * 113.61482 * 25.51005 * 12 10 9 32 32 H 1.09003 * 113.61132 * 254.60915 * 12 10 9 33 33 H 1.09001 * 109.47451 * 63.46847 * 15 13 12 34 34 H 1.09007 * 109.47149 * 303.46597 * 15 13 12 35 35 H 1.08009 * 126.12504 * 0.02894 * 17 16 15 36 36 H 1.08001 * 126.04065 * 180.02562 * 18 17 16 37 37 H 1.08002 * 125.89548 * 179.97438 * 19 18 17 38 38 H 1.09004 * 113.61272 * 139.94686 * 21 13 12 39 39 H 1.09004 * 113.61414 * 270.84138 * 21 13 12 40 40 H 1.07995 * 119.71653 * 179.72685 * 22 6 5 41 41 H 1.08006 * 119.45663 * 179.72717 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6887 -2.0611 1.4058 6 6 2.1757 -2.6779 2.5648 7 6 1.9457 -4.1187 2.8028 8 8 1.3298 -4.7785 1.9887 9 7 2.4199 -4.7009 3.9220 10 6 2.1926 -6.1289 4.1576 11 1 2.0175 -6.6870 3.2379 12 6 3.2390 -6.7752 5.0808 13 6 2.0791 -7.5607 5.7152 14 1 1.8739 -8.5109 5.2222 15 6 2.1868 -7.6913 7.2358 16 7 1.0870 -8.5211 7.7338 17 6 1.2100 -9.6323 8.4896 18 6 -0.0344 -10.1029 8.7368 19 6 -0.9493 -9.2497 8.1110 20 7 -0.2779 -8.3044 7.5049 21 6 1.1564 -6.4181 5.2590 22 6 2.8771 -1.9085 3.4936 23 7 3.0870 -0.6262 3.2789 24 6 2.6405 -0.0188 2.1963 25 1 -0.3934 0.4417 -0.7651 26 1 1.7924 -0.5138 -0.8900 27 1 1.5613 2.4679 1.2085 28 1 3.5345 1.7704 -0.0321 29 1 1.1376 -2.6253 0.6679 30 1 2.9124 -4.1747 4.5711 31 1 3.7140 -6.0704 5.7631 32 1 3.9562 -7.4049 4.5542 33 1 2.1304 -6.7023 7.6904 34 1 3.1384 -8.1562 7.4940 35 1 2.1358 -10.0679 8.8354 36 1 -0.2781 -10.9814 9.3157 37 1 -2.0240 -9.3561 8.1218 38 1 0.1947 -6.7598 4.8762 39 1 1.0610 -5.6155 5.9903 40 1 3.2548 -2.3694 4.3943 41 1 2.8314 1.0357 2.0620 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:35:04 Heat of formation + Delta-G solvation = 83.753918 kcal Electronic energy + Delta-G solvation = -24815.544811 eV Core-core repulsion = 21086.028069 eV Total energy + Delta-G solvation = -3729.516743 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.15741 -41.96906 -40.87707 -39.44531 -37.88183 -35.40972 -34.00248 -33.91767 -32.86869 -30.95221 -28.63492 -27.36222 -26.76022 -26.23116 -24.09143 -23.61192 -21.93247 -21.82762 -21.53029 -20.71029 -19.08614 -18.59316 -18.37100 -18.23369 -17.88779 -17.04324 -16.57015 -16.35890 -16.21257 -15.66207 -15.43064 -15.37269 -15.00474 -14.93439 -14.76572 -14.46988 -14.30697 -14.00285 -13.85837 -13.56727 -13.50068 -13.45239 -13.01802 -12.66466 -12.30145 -12.18921 -11.88378 -11.63977 -11.54160 -11.34936 -11.21515 -10.85780 -10.62502 -10.34934 -10.28073 -10.16105 -9.48942 -4.98430 -0.76139 -0.17545 1.01020 1.20828 1.49544 1.63107 1.67278 1.86782 1.91373 1.95609 2.44982 2.90498 3.16359 3.31515 3.37430 3.42662 3.54239 3.54939 3.66894 3.70445 3.72439 3.96342 3.98232 4.08613 4.11202 4.20613 4.29154 4.37658 4.41208 4.65048 4.67176 4.69393 4.76261 4.78038 4.79009 4.91537 4.94962 5.02258 5.10473 5.14864 5.16314 5.45379 5.75347 6.19902 6.27508 6.44500 6.79373 6.83027 6.94159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.082 4.082 3 Si 0.782 3.218 4 C -0.141 4.141 5 C 0.000 4.000 6 C -0.193 4.193 7 C 0.566 3.434 8 O -0.573 6.573 9 N -0.695 5.695 10 C 0.114 3.886 11 H 0.094 0.906 12 C -0.113 4.113 13 C -0.111 4.111 14 H 0.084 0.916 15 C 0.138 3.862 16 N -0.377 5.377 17 C 0.053 3.947 18 C -0.294 4.294 19 C 0.024 3.976 20 N -0.332 5.332 21 C -0.135 4.135 22 C 0.145 3.855 23 N -0.495 5.495 24 C 0.110 3.890 25 H 0.407 0.593 26 H 0.100 0.900 27 H -0.288 1.288 28 H -0.279 1.279 29 H 0.146 0.854 30 H 0.417 0.583 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.132 0.868 35 H 0.208 0.792 36 H 0.160 0.840 37 H 0.192 0.808 38 H 0.045 0.955 39 H 0.091 0.909 40 H 0.199 0.801 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.354 0.793 0.453 5.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.192 4.192 3 Si 0.686 3.314 4 C -0.143 4.143 5 C -0.026 4.026 6 C -0.198 4.198 7 C 0.353 3.647 8 O -0.453 6.453 9 N -0.347 5.347 10 C 0.010 3.990 11 H 0.113 0.887 12 C -0.151 4.151 13 C -0.130 4.130 14 H 0.103 0.897 15 C 0.018 3.982 16 N -0.160 5.160 17 C -0.093 4.093 18 C -0.323 4.323 19 C -0.161 4.161 20 N -0.154 5.154 21 C -0.174 4.174 22 C -0.014 4.014 23 N -0.203 5.203 24 C -0.046 4.046 25 H 0.259 0.741 26 H 0.118 0.882 27 H -0.216 1.216 28 H -0.206 1.206 29 H 0.164 0.836 30 H 0.256 0.744 31 H 0.138 0.862 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.150 0.850 35 H 0.224 0.776 36 H 0.177 0.823 37 H 0.209 0.791 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.216 0.784 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.014 2.221 0.703 6.449 hybrid contribution -0.715 -1.656 0.239 1.819 sum 5.299 0.565 0.942 5.411 Atomic orbital electron populations 1.86443 1.16918 1.82633 1.51617 1.24875 0.86257 1.11931 0.96109 0.93832 0.77705 0.74607 0.85244 1.20704 1.00732 0.94586 0.98304 1.21722 0.91756 0.93655 0.95493 1.21092 1.05138 0.94957 0.98624 1.18157 0.78344 0.86397 0.81808 1.90795 1.42328 1.65350 1.46828 1.45747 1.56379 1.10824 1.21711 1.22633 0.98079 0.80278 0.98045 0.88746 1.23315 0.95517 0.98915 0.97403 1.22491 0.97812 0.98242 0.94487 0.89727 1.22035 0.86867 0.95948 0.93331 1.49004 1.05216 1.21657 1.40088 1.23204 1.01489 0.89056 0.95571 1.21864 0.91989 1.06218 1.12220 1.24314 1.01531 0.93411 0.96838 1.77327 0.88062 1.25032 1.24954 1.23446 0.97519 0.98429 0.97969 1.23512 0.91230 0.88697 0.97932 1.67740 1.20258 1.11518 1.20779 1.22919 0.92821 0.99961 0.88874 0.74065 0.88248 1.21552 1.20603 0.83625 0.74397 0.86160 0.88846 0.88893 0.84982 0.77559 0.82286 0.79111 0.93633 0.89058 0.78421 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 0.10 12.82 -148.98 -1.91 -1.81 16 2 C -0.08 0.10 2.81 71.24 0.20 0.30 16 3 Si 0.78 -3.11 29.87 68.60 2.05 -1.06 16 4 C -0.14 -0.68 5.39 -19.81 -0.11 -0.79 16 5 C 0.00 0.00 9.38 22.73 0.21 0.21 16 6 C -0.19 -0.93 5.89 -19.99 -0.12 -1.05 16 7 C 0.57 3.63 7.78 86.78 0.68 4.31 16 8 O -0.57 -8.71 16.02 -3.88 -0.06 -8.78 16 9 N -0.70 1.00 5.32 -442.63 -2.35 -1.35 16 10 C 0.11 -0.10 4.24 45.58 0.19 0.10 16 11 H 0.09 0.43 7.46 -2.39 -0.02 0.41 16 12 C -0.11 0.95 7.40 31.12 0.23 1.18 16 13 C -0.11 0.44 3.81 -10.27 -0.04 0.40 16 14 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 15 C 0.14 -0.78 6.33 86.38 0.55 -0.24 16 16 N -0.38 -0.68 3.68 -348.06 -1.28 -1.96 16 17 C 0.05 -0.04 11.45 83.54 0.96 0.92 16 18 C -0.29 -0.63 10.80 21.99 0.24 -0.39 16 19 C 0.02 0.13 12.03 85.24 1.03 1.16 16 20 N -0.33 -2.71 12.41 -57.02 -0.71 -3.42 16 21 C -0.13 -0.10 7.45 31.18 0.23 0.14 16 22 C 0.14 0.19 10.71 85.02 0.91 1.10 16 23 N -0.50 -2.87 10.35 -194.75 -2.01 -4.89 16 24 C 0.11 0.62 9.84 84.71 0.83 1.46 16 25 H 0.41 -4.50 8.74 -74.06 -0.65 -5.15 16 26 H 0.10 -0.51 7.96 -2.39 -0.02 -0.53 16 27 H -0.29 -0.85 7.05 99.48 0.70 -0.15 16 28 H -0.28 -0.22 7.11 99.48 0.71 0.49 16 29 H 0.15 1.12 7.74 -2.91 -0.02 1.10 16 30 H 0.42 -3.61 6.79 -92.71 -0.63 -4.24 16 31 H 0.12 -1.63 8.08 -2.39 -0.02 -1.65 16 32 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 33 H 0.09 -0.63 7.87 -2.39 -0.02 -0.65 16 34 H 0.13 -1.63 8.07 -2.38 -0.02 -1.64 16 35 H 0.21 -1.86 8.06 -2.91 -0.02 -1.88 16 36 H 0.16 -0.26 8.06 -2.91 -0.02 -0.28 16 37 H 0.19 0.22 8.06 -2.91 -0.02 0.19 16 38 H 0.04 0.34 8.14 -2.38 -0.02 0.32 16 39 H 0.09 -0.02 7.92 -2.39 -0.02 -0.04 16 40 H 0.20 -1.51 6.42 -2.91 -0.02 -1.53 16 41 H 0.16 0.58 4.87 -2.91 -0.01 0.57 16 Total: 0.00 -29.61 350.46 -0.45 -30.06 By element: Atomic # 1 Polarization: -15.44 SS G_CDS: -0.17 Total: -15.60 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 5.99 Total: 8.80 kcal Atomic # 7 Polarization: -5.26 SS G_CDS: -6.36 Total: -11.62 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -1.97 Total: -10.58 kcal Atomic # 14 Polarization: -3.11 SS G_CDS: 2.05 Total: -1.06 kcal Total: -29.61 -0.45 -30.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.818 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds