Wall clock time and date at job start Sun Mar 7 2021 02:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36417 * 125.79764 * 2 1 4 4 C 1.47375 * 127.19657 * 359.97438 * 3 2 1 5 5 O 1.21612 * 119.99721 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00029 * 180.02562 * 4 3 2 7 7 C 1.46501 * 119.99584 * 179.97438 * 6 4 3 8 8 H 1.08996 * 112.84984 * 25.33745 * 7 6 4 9 9 C 1.53780 * 113.60894 * 156.52753 * 7 6 4 10 10 C 1.53780 * 87.07948 * 139.98128 * 9 7 6 11 11 H 1.08997 * 113.61410 * 89.11731 * 10 9 7 12 12 C 1.53001 * 113.61425 * 219.93449 * 10 9 7 13 13 N 1.46496 * 109.46998 * 184.99900 * 12 10 9 14 14 C 1.34950 * 126.03928 * 124.71924 * 13 12 10 15 15 C 1.35315 * 107.74711 * 179.83865 * 14 13 12 16 16 C 1.39864 * 107.92276 * 0.42090 * 15 14 13 17 17 N 1.30841 * 108.19797 * 359.73829 * 16 15 14 18 18 C 1.53778 * 113.61426 * 254.13200 * 7 6 4 19 19 C 1.47027 * 105.61201 * 179.97438 * 3 2 1 20 20 C 1.34179 * 105.95359 * 0.02562 * 19 3 2 21 21 C 1.50697 * 125.43680 * 180.02562 * 20 19 3 22 22 O 1.42900 * 109.47414 * 64.99962 * 21 20 19 23 23 Si 1.86305 * 109.47122 * 185.00079 * 21 20 19 24 24 O 1.33648 * 125.80268 * 179.68788 * 2 1 3 25 25 H 1.09001 * 109.46953 * 89.99899 * 1 2 3 26 26 H 1.09000 * 109.47318 * 209.99497 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.00128 * 1 2 3 28 28 H 0.96991 * 119.99844 * 359.97438 * 6 4 3 29 29 H 1.08997 * 113.61686 * 254.52790 * 9 7 6 30 30 H 1.08995 * 113.61994 * 25.34749 * 9 7 6 31 31 H 1.09001 * 109.47402 * 305.00009 * 12 10 9 32 32 H 1.09006 * 109.47349 * 64.99976 * 12 10 9 33 33 H 1.08003 * 126.12516 * 359.97438 * 14 13 12 34 34 H 1.08007 * 126.03704 * 180.16001 * 15 14 13 35 35 H 1.07995 * 125.90208 * 179.76204 * 16 15 14 36 36 H 1.09004 * 113.61672 * 334.57289 * 18 7 6 37 37 H 1.09005 * 113.61134 * 105.47049 * 18 7 6 38 38 H 1.07997 * 127.02046 * 180.02562 * 19 3 2 39 39 H 1.09005 * 109.46929 * 304.99774 * 21 20 19 40 40 H 0.96699 * 113.99751 * 60.00178 * 22 21 20 41 41 H 1.48497 * 110.00036 * 179.97438 * 23 21 20 42 42 H 1.48496 * 110.00030 * 301.31887 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.1065 0.0000 4 6 1.8740 2.5158 -0.0005 5 8 0.6890 2.7892 -0.0015 6 7 2.7931 3.5016 -0.0010 7 6 2.3645 4.9025 -0.0021 8 1 1.3725 5.0420 0.4274 9 6 3.4201 5.8699 0.5588 10 6 3.0143 6.8391 -0.5641 11 1 2.1996 7.5091 -0.2893 12 6 4.1980 7.5722 -1.1985 13 7 3.7025 8.5529 -2.1674 14 6 3.9809 9.8734 -2.1736 15 6 3.3364 10.4259 -3.2273 16 6 2.6325 9.4100 -3.8821 17 7 2.8512 8.2868 -3.2475 18 6 2.5530 5.6033 -1.3578 19 6 3.6850 0.5991 0.0006 20 6 3.5859 -0.7390 0.0004 21 6 4.7459 -1.7010 0.0014 22 8 5.4749 -1.5670 1.2231 23 14 4.1071 -3.4443 -0.1526 24 8 2.2889 -1.0839 0.0059 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 3.7381 3.2835 -0.0006 29 1 3.1880 6.2379 1.5582 30 1 4.4417 5.5005 0.4705 31 1 4.7669 8.0838 -0.4222 32 1 4.8411 6.8531 -1.7059 33 1 4.6078 10.3953 -1.4657 34 1 3.3580 11.4680 -3.5101 35 1 2.0153 9.5315 -4.7599 36 1 3.3373 5.1614 -1.9725 37 1 1.6219 5.7562 -1.9035 38 1 4.5928 1.1841 0.0012 39 1 5.4027 -1.4791 -0.8399 40 1 4.9517 -1.7502 2.0154 41 1 5.2414 -4.4027 -0.1534 42 1 3.1854 -3.7485 0.9712 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:35:08 Heat of formation + Delta-G solvation = 57.807358 kcal Electronic energy + Delta-G solvation = -25733.724773 eV Core-core repulsion = 21878.052762 eV Total energy + Delta-G solvation = -3855.672010 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.79072 -42.04062 -41.04761 -39.40167 -38.15483 -35.23647 -34.22823 -33.45835 -33.02313 -30.94634 -29.51866 -28.50269 -26.73737 -26.06812 -24.80354 -23.53162 -22.17264 -21.89916 -21.44784 -21.20414 -20.27942 -18.97806 -18.24190 -18.01368 -17.73065 -17.17752 -16.83899 -16.43740 -16.08536 -16.01922 -15.73295 -15.55072 -15.17608 -14.83198 -14.81174 -14.26550 -14.20823 -13.99771 -13.93215 -13.84283 -13.54816 -13.49001 -13.40694 -12.96906 -12.92152 -12.85263 -12.24452 -12.17942 -11.86450 -11.61006 -11.37224 -11.14506 -10.96565 -10.74017 -10.33204 -10.11045 -9.60567 -9.47785 -4.94837 0.20082 0.81021 1.02291 1.16193 1.40801 1.68375 1.69778 1.90379 1.97039 2.15607 2.20777 3.16364 3.33264 3.37123 3.44254 3.63159 3.71897 3.75130 3.78575 3.99159 4.09129 4.09905 4.21475 4.30547 4.37130 4.38620 4.46243 4.56812 4.62915 4.68229 4.70269 4.77098 4.79037 4.81152 4.92911 4.98544 5.03618 5.10542 5.17322 5.19341 5.22245 5.52988 5.76869 5.87140 6.20841 6.32602 6.47266 6.80789 7.14062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.084 3.916 3 C -0.269 4.269 4 C 0.587 3.413 5 O -0.578 6.578 6 N -0.699 5.699 7 C 0.117 3.883 8 H 0.093 0.907 9 C -0.115 4.115 10 C -0.110 4.110 11 H 0.084 0.916 12 C 0.139 3.861 13 N -0.377 5.377 14 C 0.053 3.947 15 C -0.293 4.293 16 C 0.025 3.975 17 N -0.331 5.331 18 C -0.133 4.133 19 C -0.144 4.144 20 C -0.059 4.059 21 C -0.031 4.031 22 O -0.533 6.533 23 Si 0.767 3.233 24 O -0.173 6.173 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.414 0.586 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.131 0.869 32 H 0.092 0.908 33 H 0.207 0.793 34 H 0.160 0.840 35 H 0.193 0.807 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.180 0.820 39 H 0.159 0.841 40 H 0.390 0.610 41 H -0.282 1.282 42 H -0.295 1.295 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.973 1.113 1.098 5.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.031 3.969 3 C -0.274 4.274 4 C 0.377 3.623 5 O -0.459 6.459 6 N -0.350 5.350 7 C 0.012 3.988 8 H 0.111 0.889 9 C -0.153 4.153 10 C -0.129 4.129 11 H 0.102 0.898 12 C 0.019 3.981 13 N -0.160 5.160 14 C -0.094 4.094 15 C -0.323 4.323 16 C -0.160 4.160 17 N -0.153 5.153 18 C -0.172 4.172 19 C -0.163 4.163 20 C -0.107 4.107 21 C -0.140 4.140 22 O -0.342 6.342 23 Si 0.671 3.329 24 O -0.071 6.071 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.252 0.748 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.149 0.851 32 H 0.110 0.890 33 H 0.224 0.776 34 H 0.177 0.823 35 H 0.210 0.790 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.198 0.802 39 H 0.176 0.824 40 H 0.240 0.760 41 H -0.208 1.208 42 H -0.222 1.222 Dipole moment (debyes) X Y Z Total from point charges 4.325 -0.981 1.218 4.599 hybrid contribution 0.321 1.413 0.903 1.708 sum 4.645 0.432 2.121 5.125 Atomic orbital electron populations 1.20699 0.82763 1.05336 1.05310 1.23208 0.94739 0.83074 0.95889 1.21228 0.94393 0.93393 1.18363 1.17455 0.85303 0.84596 0.74992 1.90756 1.18170 1.84609 1.52408 1.45654 1.09924 1.05237 1.74182 1.22517 0.99753 0.78962 0.97574 0.88926 1.23295 0.99869 0.93614 0.98555 1.22514 0.98041 0.95335 0.97041 0.89772 1.22016 0.95539 0.90933 0.89618 1.48999 1.37168 1.07270 1.22545 1.23203 1.00965 0.84594 1.00614 1.21863 1.07806 1.01776 1.00813 1.24321 1.00362 0.90608 1.00746 1.77332 1.12654 1.24614 1.00746 1.23423 1.01504 0.95805 0.96443 1.22810 0.96317 0.93599 1.03610 1.22858 0.82780 0.96006 1.09013 1.24491 0.91155 1.07239 0.91128 1.86637 1.40060 1.91528 1.15941 0.93523 0.78242 0.72221 0.88920 1.83682 1.16920 1.35003 1.71445 0.88129 0.88451 0.88683 0.74830 0.89096 0.86548 0.85068 0.88996 0.77617 0.82257 0.79019 0.89267 0.93569 0.80237 0.82353 0.76002 1.20825 1.22197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.12 9.89 71.24 0.70 0.58 16 2 C 0.08 0.36 7.37 25.26 0.19 0.54 16 3 C -0.27 -1.19 6.31 -18.99 -0.12 -1.31 16 4 C 0.59 4.09 7.81 86.65 0.68 4.76 16 5 O -0.58 -8.09 14.46 -4.07 -0.06 -8.15 16 6 N -0.70 -0.15 5.36 -443.35 -2.38 -2.53 16 7 C 0.12 0.03 4.21 45.52 0.19 0.22 16 8 H 0.09 0.50 7.50 -2.39 -0.02 0.48 16 9 C -0.11 0.81 7.39 31.12 0.23 1.04 16 10 C -0.11 0.35 3.82 -10.21 -0.04 0.31 16 11 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 12 C 0.14 -0.70 6.35 86.38 0.55 -0.15 16 13 N -0.38 -0.78 3.68 -348.06 -1.28 -2.06 16 14 C 0.05 -0.03 11.45 83.54 0.96 0.92 16 15 C -0.29 -0.61 10.80 21.99 0.24 -0.37 16 16 C 0.02 0.13 12.03 85.23 1.02 1.16 16 17 N -0.33 -2.72 12.42 -57.03 -0.71 -3.42 16 18 C -0.13 -0.18 7.45 31.18 0.23 0.05 16 19 C -0.14 0.06 10.48 23.65 0.25 0.30 16 20 C -0.06 0.01 6.18 24.76 0.15 0.16 16 21 C -0.03 0.11 2.97 71.24 0.21 0.32 16 22 O -0.53 0.77 12.88 -148.98 -1.92 -1.15 16 23 Si 0.77 -1.90 32.09 68.60 2.20 0.30 16 24 O -0.17 -0.46 8.90 4.52 0.04 -0.42 16 25 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 26 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.09 0.47 6.49 -2.39 -0.02 0.46 16 28 H 0.41 -2.36 7.88 -92.71 -0.73 -3.09 16 29 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 30 H 0.12 -1.36 8.07 -2.39 -0.02 -1.38 16 31 H 0.13 -1.52 8.07 -2.39 -0.02 -1.54 16 32 H 0.09 -0.55 7.86 -2.38 -0.02 -0.57 16 33 H 0.21 -1.81 8.06 -2.91 -0.02 -1.84 16 34 H 0.16 -0.28 8.06 -2.91 -0.02 -0.30 16 35 H 0.19 0.16 8.06 -2.91 -0.02 0.13 16 36 H 0.09 0.05 7.91 -2.38 -0.02 0.03 16 37 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 38 H 0.18 -1.05 7.74 -2.91 -0.02 -1.07 16 39 H 0.16 -1.21 7.96 -2.38 -0.02 -1.23 16 40 H 0.39 -2.35 8.70 -74.06 -0.64 -3.00 16 41 H -0.28 -0.86 7.11 99.48 0.71 -0.16 16 42 H -0.30 -1.21 7.11 99.48 0.71 -0.50 16 Total: 0.00 -24.19 361.59 1.06 -23.13 By element: Atomic # 1 Polarization: -13.98 SS G_CDS: -0.28 Total: -14.26 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.44 Total: 8.55 kcal Atomic # 7 Polarization: -3.64 SS G_CDS: -4.36 Total: -8.01 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -1.94 Total: -9.71 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: 2.20 Total: 0.30 kcal Total: -24.19 1.06 -23.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.936 kcal (2) G-P(sol) polarization free energy of solvation -24.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds