Wall clock time and date at job start Sun Mar 7 2021 02:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86302 * 109.47031 * 2 1 4 4 C 1.50696 * 109.47058 * 239.99744 * 2 1 3 5 5 C 1.33745 * 125.11758 * 299.99815 * 4 2 1 6 6 C 1.37802 * 115.07530 * 179.75666 * 5 4 2 7 7 C 1.34984 * 114.70298 * 0.49605 * 6 5 4 8 8 C 1.47556 * 125.27632 * 179.79099 * 7 6 5 9 9 C 1.39817 * 120.00073 * 179.72597 * 8 7 6 10 10 C 1.36564 * 120.00531 * 180.02562 * 9 8 7 11 11 C 1.39832 * 119.99491 * 359.97438 * 10 9 8 12 12 C 1.47566 * 119.99944 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99996 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99591 * 179.72770 * 12 11 10 15 15 C 1.46496 * 119.99375 * 180.02562 * 14 12 11 16 16 H 1.08997 * 112.85905 * 23.79820 * 15 14 12 17 17 C 1.53785 * 113.61489 * 154.99914 * 15 14 12 18 18 C 1.53782 * 87.08293 * 139.97661 * 17 15 14 19 19 H 1.09001 * 113.61120 * 89.20029 * 18 17 15 20 20 C 1.53000 * 113.61481 * 220.02067 * 18 17 15 21 21 N 1.46496 * 109.47199 * 185.00177 * 20 18 17 22 22 C 1.34948 * 126.03998 * 124.99991 * 21 20 18 23 23 C 1.35310 * 107.75045 * 179.97438 * 22 21 20 24 24 C 1.39876 * 107.91979 * 359.97438 * 23 22 21 25 25 N 1.30838 * 108.19631 * 359.74265 * 24 23 22 26 26 C 1.53787 * 87.08157 * 334.56807 * 18 17 15 27 27 C 1.39835 * 120.00032 * 0.27835 * 11 10 9 28 28 C 1.36559 * 119.99650 * 359.46493 * 27 11 10 29 29 S 1.75858 * 125.11641 * 120.02751 * 4 2 1 30 30 H 0.96700 * 114.00299 * 60.00272 * 1 2 3 31 31 H 1.08996 * 109.46783 * 119.99544 * 2 1 3 32 32 H 1.48502 * 109.99699 * 298.67774 * 3 2 1 33 33 H 1.48499 * 110.00177 * 59.99572 * 3 2 1 34 34 H 1.07999 * 122.46090 * 0.02562 * 5 4 2 35 35 H 1.07997 * 122.64879 * 180.32057 * 6 5 4 36 36 H 1.07999 * 120.00009 * 359.97438 * 9 8 7 37 37 H 1.07991 * 120.00331 * 179.97438 * 10 9 8 38 38 H 0.96995 * 119.99923 * 359.97438 * 14 12 11 39 39 H 1.08995 * 113.61376 * 254.52433 * 17 15 14 40 40 H 1.08998 * 113.61323 * 25.34259 * 17 15 14 41 41 H 1.09007 * 109.46951 * 305.00397 * 20 18 17 42 42 H 1.08996 * 109.47503 * 64.99527 * 20 18 17 43 43 H 1.08004 * 126.12647 * 359.97438 * 22 21 20 44 44 H 1.08004 * 126.04628 * 180.02562 * 23 22 21 45 45 H 1.07993 * 125.90102 * 180.02562 * 24 23 22 46 46 H 1.08997 * 113.61236 * 270.88174 * 26 18 17 47 47 H 1.08993 * 113.60868 * 139.98103 * 26 18 17 48 48 H 1.07997 * 119.99894 * 179.70081 * 27 11 10 49 49 H 1.07997 * 120.00052 * 180.22963 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6721 -1.9848 -1.5427 6 6 2.2333 -2.4228 -2.7226 7 6 2.9678 -1.4974 -3.3755 8 6 3.6736 -1.7158 -4.6528 9 6 4.4007 -0.6741 -5.2368 10 6 5.0535 -0.8759 -6.4192 11 6 4.9952 -2.1247 -7.0456 12 6 5.7010 -2.3431 -8.3229 13 8 6.3329 -1.4371 -8.8310 14 7 5.6493 -3.5485 -8.9239 15 6 6.3505 -3.7654 -10.1917 16 1 7.1790 -3.0731 -10.3412 17 6 6.7227 -5.2356 -10.4461 18 6 6.3282 -4.9998 -11.9136 19 1 7.1507 -4.6461 -12.5354 20 6 5.5707 -6.1719 -12.5406 21 7 5.3458 -5.9031 -13.9631 22 6 5.7058 -6.7027 -14.9888 23 6 5.3206 -6.0994 -16.1370 24 6 4.7035 -4.8897 -15.8016 25 7 4.7129 -4.7739 -14.4984 26 6 5.4110 -3.8754 -11.4042 27 6 4.2637 -3.1651 -6.4642 28 6 3.6153 -2.9646 -5.2792 29 16 2.9472 0.0112 -2.4713 30 1 -0.3934 0.4417 -0.7650 31 1 1.7923 -0.5138 0.8900 32 1 1.5879 2.4585 -1.2243 33 1 1.5614 2.4680 1.2084 34 1 1.0638 -2.6225 -0.9183 35 1 2.0985 -3.4278 -3.0941 36 1 4.4454 0.2906 -4.7532 37 1 5.6147 -0.0712 -6.8704 38 1 5.1485 -4.2723 -8.5165 39 1 7.7828 -5.4479 -10.3077 40 1 6.0778 -5.9453 -9.9278 41 1 6.1577 -7.0839 -12.4315 42 1 4.6114 -6.2951 -12.0380 43 1 6.2108 -7.6539 -14.9077 44 1 5.4634 -6.4842 -17.1361 45 1 4.2869 -4.1770 -16.4978 46 1 4.4065 -4.2132 -11.1491 47 1 5.4122 -2.9896 -12.0393 48 1 4.2147 -4.1281 -6.9505 49 1 3.0534 -3.7691 -4.8283 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:35:12 Heat of formation + Delta-G solvation = 107.506256 kcal Electronic energy + Delta-G solvation = -31621.818566 eV Core-core repulsion = 27223.930159 eV Total energy + Delta-G solvation = -4397.888406 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.129 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.05120 -41.52938 -40.35861 -39.47377 -38.91255 -37.47721 -35.30701 -33.88394 -33.18124 -32.21056 -30.95131 -30.49118 -28.57469 -27.22528 -26.71492 -25.09189 -24.17353 -23.76434 -23.18090 -21.91352 -21.79550 -21.46658 -20.73911 -20.28359 -19.17406 -18.59495 -18.24753 -17.72222 -17.32686 -16.68368 -16.49849 -16.32704 -16.21617 -16.16850 -16.10934 -15.63458 -15.47167 -15.19309 -14.98770 -14.84959 -14.51391 -14.45761 -14.32129 -13.97729 -13.80740 -13.63288 -13.55939 -13.47691 -13.41237 -13.30976 -13.11411 -12.93048 -12.55461 -12.42997 -12.23462 -12.09409 -11.84679 -11.60978 -11.52390 -11.36957 -11.08983 -10.88202 -10.65939 -10.32541 -10.19808 -10.11738 -9.55560 -9.47137 -9.03445 -5.09383 -0.89701 0.24514 0.33166 0.38913 0.76467 1.02877 1.19852 1.51804 1.55200 1.69691 1.83768 1.94700 1.97251 2.06795 2.81584 3.29999 3.34437 3.40235 3.45408 3.62750 3.66350 3.71782 3.74771 3.77829 3.83920 3.99781 4.10468 4.19076 4.22428 4.30318 4.33311 4.39659 4.41111 4.51859 4.55444 4.61558 4.69670 4.72688 4.78564 4.81745 4.91182 4.93581 4.98885 5.01545 5.05071 5.10120 5.16968 5.18541 5.22501 5.28624 5.31840 5.48268 5.51846 5.72733 5.77037 6.21986 6.36563 6.44622 6.81171 7.11364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.033 4.033 3 Si 0.708 3.292 4 C -0.218 4.218 5 C -0.110 4.110 6 C -0.115 4.115 7 C -0.160 4.160 8 C 0.007 3.993 9 C -0.129 4.129 10 C -0.066 4.066 11 C -0.152 4.152 12 C 0.555 3.445 13 O -0.585 6.585 14 N -0.698 5.698 15 C 0.113 3.887 16 H 0.090 0.910 17 C -0.113 4.113 18 C -0.111 4.111 19 H 0.082 0.918 20 C 0.139 3.861 21 N -0.376 5.376 22 C 0.053 3.947 23 C -0.294 4.294 24 C 0.024 3.976 25 N -0.332 5.332 26 C -0.134 4.134 27 C -0.066 4.066 28 C -0.108 4.108 29 S 0.120 5.880 30 H 0.388 0.612 31 H 0.140 0.860 32 H -0.268 1.268 33 H -0.271 1.271 34 H 0.155 0.845 35 H 0.168 0.832 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.417 0.583 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.132 0.868 42 H 0.094 0.906 43 H 0.208 0.792 44 H 0.159 0.841 45 H 0.192 0.808 46 H 0.093 0.907 47 H 0.042 0.958 48 H 0.165 0.835 49 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 -9.386 2.147 9.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.145 4.145 3 Si 0.610 3.390 4 C -0.336 4.336 5 C -0.140 4.140 6 C -0.146 4.146 7 C -0.277 4.277 8 C 0.005 3.995 9 C -0.148 4.148 10 C -0.085 4.085 11 C -0.155 4.155 12 C 0.344 3.656 13 O -0.466 6.466 14 N -0.350 5.350 15 C 0.008 3.992 16 H 0.108 0.892 17 C -0.151 4.151 18 C -0.131 4.131 19 H 0.100 0.900 20 C 0.019 3.981 21 N -0.159 5.159 22 C -0.093 4.093 23 C -0.323 4.323 24 C -0.161 4.161 25 N -0.154 5.154 26 C -0.173 4.173 27 C -0.085 4.085 28 C -0.128 4.128 29 S 0.387 5.613 30 H 0.237 0.763 31 H 0.158 0.842 32 H -0.193 1.193 33 H -0.197 1.197 34 H 0.173 0.827 35 H 0.185 0.815 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.256 0.744 39 H 0.109 0.891 40 H 0.139 0.861 41 H 0.150 0.850 42 H 0.112 0.888 43 H 0.225 0.775 44 H 0.177 0.823 45 H 0.209 0.791 46 H 0.111 0.889 47 H 0.061 0.939 48 H 0.182 0.818 49 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.431 -6.073 3.307 7.061 hybrid contribution -1.596 -1.441 -1.190 2.458 sum -0.166 -7.514 2.117 7.808 Atomic orbital electron populations 1.86599 1.17796 1.80179 1.50125 1.24440 0.83360 1.09983 0.96709 0.94480 0.91063 0.73986 0.79443 1.25093 1.07062 0.99224 1.02178 1.20194 1.01277 0.94876 0.97652 1.20646 0.97661 1.01356 0.94891 1.23166 1.06642 0.98164 0.99712 1.18471 0.95044 0.94636 0.91397 1.21022 0.98357 0.99361 0.96021 1.20941 0.96717 0.96563 0.94244 1.20034 1.03137 0.96315 0.96016 1.18579 0.79717 0.82742 0.84525 1.90781 1.44683 1.44055 1.67116 1.45749 1.52823 1.12703 1.23678 1.22534 0.95556 0.98781 0.82282 0.89225 1.23306 1.03992 0.94422 0.93392 1.22495 0.98470 0.95674 0.96466 0.89959 1.22035 1.01989 0.99278 0.74818 1.48999 1.44385 1.15038 1.07468 1.23206 1.00225 0.98609 0.87291 1.21858 1.11942 0.98211 1.00278 1.24306 0.99896 0.98858 0.93019 1.77327 1.19338 1.07598 1.11186 1.23419 0.98988 0.98652 0.96265 1.21268 0.93704 0.98648 0.94857 1.21210 0.99944 0.96395 0.95208 1.84245 1.48926 1.13027 1.15090 0.76293 0.84216 1.19333 1.19686 0.82740 0.81513 0.84898 0.85580 0.74361 0.89106 0.86057 0.84960 0.88798 0.77538 0.82322 0.79146 0.88886 0.93860 0.81761 0.82009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.48 12.86 -148.98 -1.92 -2.40 16 2 C -0.03 0.05 2.96 71.23 0.21 0.27 16 3 Si 0.71 -0.82 30.96 68.60 2.12 1.31 16 4 C -0.22 0.22 5.73 24.66 0.14 0.36 16 5 C -0.11 0.20 10.00 21.15 0.21 0.41 16 6 C -0.12 0.31 9.64 21.42 0.21 0.52 16 7 C -0.16 0.03 6.37 23.98 0.15 0.18 16 8 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 9 C -0.13 -0.30 9.54 22.26 0.21 -0.09 16 10 C -0.07 -0.32 9.53 22.26 0.21 -0.10 16 11 C -0.15 -0.40 5.88 -20.04 -0.12 -0.52 16 12 C 0.56 3.46 7.76 86.70 0.67 4.14 16 13 O -0.59 -9.33 15.93 -3.99 -0.06 -9.40 16 14 N -0.70 1.15 5.30 -443.16 -2.35 -1.20 16 15 C 0.11 -0.07 4.24 45.52 0.19 0.13 16 16 H 0.09 0.50 7.46 -2.39 -0.02 0.48 16 17 C -0.11 0.95 7.39 31.12 0.23 1.18 16 18 C -0.11 0.44 3.83 -10.26 -0.04 0.40 16 19 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 20 C 0.14 -0.84 6.35 86.38 0.55 -0.29 16 21 N -0.38 -0.54 3.68 -348.07 -1.28 -1.82 16 22 C 0.05 -0.06 11.45 83.54 0.96 0.90 16 23 C -0.29 -0.54 10.80 21.99 0.24 -0.30 16 24 C 0.02 0.13 12.03 85.24 1.03 1.15 16 25 N -0.33 -2.63 12.42 -57.02 -0.71 -3.34 16 26 C -0.13 -0.08 7.43 31.12 0.23 0.15 16 27 C -0.07 0.29 9.48 22.26 0.21 0.50 16 28 C -0.11 0.45 9.48 22.26 0.21 0.66 16 29 S 0.12 -0.01 19.46 -56.49 -1.10 -1.11 16 30 H 0.39 -1.61 8.70 -74.06 -0.64 -2.25 16 31 H 0.14 -0.58 7.96 -2.39 -0.02 -0.60 16 32 H -0.27 -0.86 7.11 99.48 0.71 -0.15 16 33 H -0.27 -1.33 7.11 99.48 0.71 -0.63 16 34 H 0.16 -0.58 8.06 -2.91 -0.02 -0.61 16 35 H 0.17 -1.32 6.88 -2.91 -0.02 -1.34 16 36 H 0.13 0.09 7.26 -2.91 -0.02 0.07 16 37 H 0.13 0.87 7.64 -2.92 -0.02 0.84 16 38 H 0.42 -3.90 6.74 -92.71 -0.62 -4.52 16 39 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 40 H 0.12 -1.70 8.08 -2.39 -0.02 -1.72 16 41 H 0.13 -1.69 8.07 -2.38 -0.02 -1.71 16 42 H 0.09 -0.69 7.84 -2.39 -0.02 -0.71 16 43 H 0.21 -1.94 8.06 -2.91 -0.02 -1.97 16 44 H 0.16 -0.30 8.06 -2.91 -0.02 -0.32 16 45 H 0.19 0.17 8.06 -2.91 -0.02 0.15 16 46 H 0.09 -0.08 7.90 -2.39 -0.02 -0.10 16 47 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 48 H 0.17 -2.02 6.38 -2.91 -0.02 -2.04 16 49 H 0.16 -1.63 6.74 -2.91 -0.02 -1.65 16 Total: 0.00 -27.83 424.89 0.07 -27.76 By element: Atomic # 1 Polarization: -19.10 SS G_CDS: -0.22 Total: -19.32 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.59 Total: 9.52 kcal Atomic # 7 Polarization: -2.02 SS G_CDS: -4.34 Total: -6.36 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -1.98 Total: -11.79 kcal Atomic # 14 Polarization: -0.82 SS G_CDS: 2.12 Total: 1.31 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -1.10 Total: -1.11 kcal Total: -27.83 0.07 -27.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.266 kcal (2) G-P(sol) polarization free energy of solvation -27.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds