Wall clock time and date at job start Sun Mar 7 2021 02:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.38053 * 119.80725 * 300.00041 * 4 2 1 6 6 C 1.38711 * 120.08529 * 179.97438 * 5 4 2 7 7 O 1.35659 * 120.15153 * 180.02562 * 6 5 4 8 8 C 1.40135 * 119.70220 * 0.02562 * 6 5 4 9 9 C 1.47534 * 120.19346 * 180.02562 * 8 6 5 10 10 O 1.21588 * 119.99687 * 0.02562 * 9 8 6 11 11 N 1.34776 * 120.00167 * 180.02562 * 9 8 6 12 12 C 1.46495 * 120.00233 * 180.02562 * 11 9 8 13 13 H 1.09005 * 112.85085 * 23.79722 * 12 11 9 14 14 C 1.53784 * 113.61710 * 154.99526 * 12 11 9 15 15 C 1.53785 * 87.07923 * 139.97968 * 14 12 11 16 16 H 1.08998 * 113.61422 * 89.11834 * 15 14 12 17 17 C 1.52997 * 113.61122 * 219.93365 * 15 14 12 18 18 N 1.46495 * 109.47205 * 185.00103 * 17 15 14 19 19 C 1.34952 * 126.03868 * 125.00199 * 18 17 15 20 20 C 1.35316 * 107.74784 * 179.97438 * 19 18 17 21 21 C 1.39870 * 107.92108 * 359.97438 * 20 19 18 22 22 N 1.30844 * 108.20095 * 359.74122 * 21 20 19 23 23 C 1.53775 * 87.08326 * 334.56795 * 15 14 12 24 24 C 1.39710 * 119.61490 * 0.02562 * 8 6 5 25 25 C 1.37788 * 119.90634 * 359.71768 * 24 8 6 26 26 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 27 27 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 28 28 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 29 29 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 30 30 H 1.07999 * 119.95645 * 359.97438 * 5 4 2 31 31 H 0.96698 * 113.99814 * 89.99254 * 7 6 5 32 32 H 0.97002 * 119.99896 * 359.97438 * 11 9 8 33 33 H 1.09000 * 113.61438 * 254.52885 * 14 12 11 34 34 H 1.08996 * 113.61343 * 25.43226 * 14 12 11 35 35 H 1.09002 * 109.47495 * 305.00327 * 17 15 14 36 36 H 1.09007 * 109.47091 * 65.00211 * 17 15 14 37 37 H 1.07998 * 126.12596 * 359.95743 * 19 18 17 38 38 H 1.07995 * 126.04419 * 180.02562 * 20 19 18 39 39 H 1.08003 * 125.90298 * 179.97438 * 21 20 19 40 40 H 1.09001 * 113.61269 * 270.88606 * 23 15 14 41 41 H 1.08995 * 113.61807 * 139.98259 * 23 15 14 42 42 H 1.08002 * 120.04639 * 179.97438 * 24 8 6 43 43 H 1.08009 * 119.84846 * 180.29834 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5954 -2.0322 -1.4449 6 6 2.0541 -2.6916 -2.5757 7 8 1.7244 -3.9902 -2.7881 8 6 2.8598 -2.0102 -3.4979 9 6 3.3533 -2.7008 -4.7046 10 8 3.0607 -3.8644 -4.9015 11 7 4.1283 -2.0419 -5.5887 12 6 4.6178 -2.7275 -6.7872 13 1 3.9954 -3.5752 -7.0739 14 6 4.9390 -1.7771 -7.9527 15 6 6.1716 -2.6553 -8.2258 16 1 5.9752 -3.4840 -8.9061 17 6 7.4203 -1.8574 -8.6063 18 7 8.5007 -2.7811 -8.9610 19 6 9.1965 -2.7825 -10.1173 20 6 10.1014 -3.7865 -10.0529 21 6 9.9540 -4.4200 -8.8147 22 7 8.9987 -3.8145 -8.1569 23 6 6.1203 -3.0518 -6.7409 24 6 3.1930 -0.6730 -3.2679 25 6 2.7241 -0.0321 -2.1419 26 1 -0.3934 0.4417 -0.7651 27 1 1.7923 -0.5139 0.8900 28 1 1.5879 2.4585 -1.2243 29 1 1.5615 2.4679 1.2085 30 1 0.9745 -2.5535 -0.7312 31 1 0.9075 -4.1114 -3.2910 32 1 4.3613 -1.1135 -5.4318 33 1 4.1993 -1.8018 -8.7529 34 1 5.1864 -0.7643 -7.6348 35 1 7.1961 -1.2161 -9.4587 36 1 7.7305 -1.2430 -7.7611 37 1 9.0561 -2.1040 -10.9457 38 1 10.8125 -4.0513 -10.8214 39 1 10.5317 -5.2612 -8.4609 40 1 6.6906 -2.3875 -6.0917 41 1 6.3343 -4.1056 -6.5628 42 1 3.8138 -0.1413 -3.9738 43 1 2.9783 1.0031 -1.9675 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_13422076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:35:17 Heat of formation + Delta-G solvation = 30.630821 kcal Electronic energy + Delta-G solvation = -27020.821885 eV Core-core repulsion = 23035.745271 eV Total energy + Delta-G solvation = -3985.076614 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.05269 -41.70758 -40.57342 -39.28250 -38.43394 -37.24780 -35.18467 -33.74104 -32.48674 -31.12237 -30.92565 -28.65207 -27.42498 -26.70236 -24.57351 -23.90185 -23.09942 -21.90452 -21.74775 -21.44527 -20.74821 -19.42432 -18.67442 -18.33730 -18.20127 -17.44420 -16.81332 -16.51854 -16.44118 -16.18527 -16.07421 -15.88218 -15.55580 -15.26407 -15.15974 -14.82463 -14.79699 -14.42797 -13.97294 -13.74435 -13.54972 -13.46269 -13.40128 -13.22969 -13.02669 -12.87828 -12.39773 -12.24092 -12.12949 -11.84030 -11.61419 -11.60035 -11.35068 -10.94745 -10.66119 -10.32134 -10.21974 -9.98855 -9.78704 -9.46720 -4.89477 -0.42815 0.13915 1.03297 1.27807 1.62165 1.68176 1.71260 1.97564 1.99541 2.07041 2.56027 3.09032 3.35527 3.39311 3.43626 3.48714 3.65102 3.71245 3.75717 3.80902 4.00579 4.07578 4.10860 4.23398 4.27074 4.32790 4.39746 4.42594 4.62873 4.70883 4.72996 4.75276 4.79210 4.82870 4.93988 5.00024 5.02562 5.06003 5.12355 5.17912 5.21539 5.23180 5.53783 5.59437 5.77398 6.22622 6.45939 6.47864 6.68309 6.81582 7.16553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.095 4.095 3 Si 0.781 3.219 4 C -0.070 4.070 5 C -0.141 4.141 6 C 0.149 3.851 7 O -0.500 6.500 8 C -0.180 4.180 9 C 0.554 3.446 10 O -0.569 6.569 11 N -0.700 5.700 12 C 0.116 3.884 13 H 0.088 0.912 14 C -0.112 4.112 15 C -0.111 4.111 16 H 0.081 0.919 17 C 0.139 3.861 18 N -0.377 5.377 19 C 0.053 3.947 20 C -0.294 4.294 21 C 0.024 3.976 22 N -0.332 5.332 23 C -0.135 4.135 24 C -0.051 4.051 25 C -0.130 4.130 26 H 0.388 0.612 27 H 0.124 0.876 28 H -0.268 1.268 29 H -0.308 1.308 30 H 0.132 0.868 31 H 0.406 0.594 32 H 0.417 0.583 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.095 0.905 37 H 0.208 0.792 38 H 0.159 0.841 39 H 0.192 0.808 40 H 0.093 0.907 41 H 0.040 0.960 42 H 0.172 0.828 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 10.031 -4.551 11.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.203 4.203 3 Si 0.685 3.315 4 C -0.071 4.071 5 C -0.159 4.159 6 C 0.103 3.897 7 O -0.312 6.312 8 C -0.184 4.184 9 C 0.342 3.658 10 O -0.449 6.449 11 N -0.352 5.352 12 C 0.011 3.989 13 H 0.106 0.894 14 C -0.150 4.150 15 C -0.131 4.131 16 H 0.099 0.901 17 C 0.019 3.981 18 N -0.159 5.159 19 C -0.093 4.093 20 C -0.323 4.323 21 C -0.161 4.161 22 N -0.154 5.154 23 C -0.174 4.174 24 C -0.070 4.070 25 C -0.147 4.147 26 H 0.238 0.762 27 H 0.142 0.858 28 H -0.194 1.194 29 H -0.236 1.236 30 H 0.150 0.850 31 H 0.266 0.734 32 H 0.256 0.744 33 H 0.109 0.891 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.113 0.887 37 H 0.225 0.775 38 H 0.177 0.823 39 H 0.208 0.792 40 H 0.112 0.888 41 H 0.059 0.941 42 H 0.189 0.811 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.647 9.734 -2.747 10.247 hybrid contribution -1.031 -0.748 -1.148 1.715 sum 0.615 8.986 -3.895 9.813 Atomic orbital electron populations 1.86601 1.18280 1.80508 1.50265 1.25499 0.83719 1.12877 0.98214 0.93933 0.89967 0.70705 0.76934 1.20511 0.96393 0.93560 0.96654 1.21325 1.01803 0.94826 0.97992 1.18798 0.94593 0.83430 0.92855 1.84722 1.48172 1.20888 1.77466 1.20467 1.05397 0.96175 0.96359 1.18419 0.78281 0.85896 0.83197 1.90810 1.59143 1.18082 1.76828 1.45737 1.51090 1.16118 1.22257 1.22492 0.94138 0.97088 0.85222 0.89383 1.23307 0.95964 0.99058 0.96704 1.22487 0.94801 0.99262 0.96543 0.90103 1.22041 0.82602 0.89207 1.04264 1.49016 1.28845 1.25782 1.12305 1.23203 0.93920 1.00589 0.91586 1.21861 1.07515 1.02162 1.00797 1.24311 0.96682 1.00660 0.94482 1.77337 1.15372 1.02978 1.19707 1.23420 0.95919 1.01264 0.96778 1.21512 0.96786 0.91177 0.97500 1.21257 0.98276 1.01322 0.93886 0.76229 0.85798 1.19375 1.23635 0.84965 0.73441 0.74428 0.89140 0.85952 0.84954 0.88709 0.77528 0.82317 0.79156 0.88831 0.94088 0.81096 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.24 12.76 -148.98 -1.90 -2.15 16 2 C -0.10 0.30 2.81 71.24 0.20 0.50 16 3 Si 0.78 -4.75 29.77 68.60 2.04 -2.71 16 4 C -0.07 0.16 5.39 -19.83 -0.11 0.06 16 5 C -0.14 -0.34 9.53 22.34 0.21 -0.13 16 6 C 0.15 0.84 6.72 22.84 0.15 0.99 16 7 O -0.50 -4.59 11.58 -68.83 -0.80 -5.39 16 8 C -0.18 -0.43 5.89 -20.01 -0.12 -0.55 16 9 C 0.55 3.37 7.76 86.70 0.67 4.04 16 10 O -0.57 -8.96 14.76 16.93 0.25 -8.71 16 11 N -0.70 1.49 5.31 -443.20 -2.35 -0.87 16 12 C 0.12 -0.10 4.24 45.52 0.19 0.10 16 13 H 0.09 0.48 7.46 -2.38 -0.02 0.46 16 14 C -0.11 0.99 7.39 31.12 0.23 1.22 16 15 C -0.11 0.45 3.83 -10.27 -0.04 0.41 16 16 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 17 C 0.14 -0.87 6.35 86.38 0.55 -0.32 16 18 N -0.38 -0.54 3.68 -348.06 -1.28 -1.82 16 19 C 0.05 -0.06 11.45 83.54 0.96 0.90 16 20 C -0.29 -0.55 10.80 21.99 0.24 -0.31 16 21 C 0.02 0.13 12.03 85.24 1.03 1.15 16 22 N -0.33 -2.65 12.42 -57.02 -0.71 -3.35 16 23 C -0.13 -0.09 7.43 31.12 0.23 0.14 16 24 C -0.05 0.30 9.54 22.52 0.21 0.52 16 25 C -0.13 0.85 8.64 22.24 0.19 1.04 16 26 H 0.39 -2.27 8.70 -74.06 -0.64 -2.92 16 27 H 0.12 -0.44 7.96 -2.38 -0.02 -0.46 16 28 H -0.27 1.13 7.11 99.48 0.71 1.83 16 29 H -0.31 -0.91 7.11 99.48 0.71 -0.20 16 30 H 0.13 0.42 8.06 -2.91 -0.02 0.39 16 31 H 0.41 0.91 9.06 -74.06 -0.67 0.24 16 32 H 0.42 -4.22 6.76 -92.71 -0.63 -4.84 16 33 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 34 H 0.12 -1.79 8.08 -2.39 -0.02 -1.81 16 35 H 0.13 -1.72 8.07 -2.39 -0.02 -1.74 16 36 H 0.09 -0.73 7.85 -2.38 -0.02 -0.75 16 37 H 0.21 -1.96 8.06 -2.91 -0.02 -1.99 16 38 H 0.16 -0.30 8.06 -2.91 -0.02 -0.32 16 39 H 0.19 0.19 8.06 -2.91 -0.02 0.17 16 40 H 0.09 -0.09 7.90 -2.39 -0.02 -0.11 16 41 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.17 -2.42 6.40 -2.91 -0.02 -2.43 16 43 H 0.17 -2.04 4.85 -2.91 -0.01 -2.05 16 Total: 0.00 -31.57 364.04 -0.77 -32.34 By element: Atomic # 1 Polarization: -16.28 SS G_CDS: -0.83 Total: -17.10 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 4.80 Total: 9.75 kcal Atomic # 7 Polarization: -1.70 SS G_CDS: -4.34 Total: -6.04 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -2.45 Total: -16.24 kcal Atomic # 14 Polarization: -4.75 SS G_CDS: 2.04 Total: -2.71 kcal Total: -31.57 -0.77 -32.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13422076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.967 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds