Wall clock time and date at job start Sun Mar 7 2021 02:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37791 * 119.84829 * 2 1 4 4 C 1.39702 * 119.90662 * 179.97438 * 3 2 1 5 5 C 1.47541 * 120.18676 * 180.02562 * 4 3 2 6 6 O 1.21597 * 119.99530 * 179.97438 * 5 4 3 7 7 N 1.34770 * 120.00182 * 359.97021 * 5 4 3 8 8 C 1.46507 * 119.99822 * 180.02562 * 7 5 4 9 9 H 1.08997 * 112.85063 * 336.19971 * 8 7 5 10 10 C 1.53779 * 113.60848 * 107.50661 * 8 7 5 11 11 C 1.53789 * 87.07916 * 139.98077 * 10 8 7 12 12 H 1.08997 * 113.68849 * 89.12683 * 11 10 8 13 13 C 1.52997 * 113.61353 * 220.01469 * 11 10 8 14 14 N 1.46499 * 109.47594 * 272.49682 * 13 11 10 15 15 C 1.34947 * 126.03892 * 124.99684 * 14 13 11 16 16 C 1.35311 * 107.74770 * 179.97438 * 15 14 13 17 17 C 1.39880 * 107.91863 * 0.02562 * 16 15 14 18 18 N 1.30835 * 108.19886 * 359.73621 * 17 16 15 19 19 C 1.53778 * 87.07792 * 334.56386 * 11 10 8 20 20 C 1.40135 * 119.62120 * 0.02562 * 4 3 2 21 21 O 1.35647 * 120.15453 * 179.97438 * 20 4 3 22 22 C 1.38709 * 119.69759 * 0.02562 * 20 4 3 23 23 C 1.50701 * 119.95950 * 179.97438 * 22 20 4 24 24 O 1.42900 * 109.46908 * 74.97910 * 23 22 20 25 25 Si 1.86300 * 109.47204 * 194.97764 * 23 22 20 26 26 C 1.38055 * 120.08340 * 359.97438 * 22 20 4 27 27 H 1.09006 * 109.46864 * 270.00001 * 1 2 3 28 28 H 1.08994 * 109.47452 * 30.00272 * 1 2 3 29 29 H 1.09004 * 109.47025 * 150.00474 * 1 2 3 30 30 H 1.08003 * 120.04504 * 0.02562 * 3 2 1 31 31 H 0.97002 * 120.00423 * 0.02562 * 7 5 4 32 32 H 1.09002 * 113.61296 * 254.52677 * 10 8 7 33 33 H 1.08997 * 113.62118 * 25.43410 * 10 8 7 34 34 H 1.08998 * 109.46957 * 32.50049 * 13 11 10 35 35 H 1.09003 * 109.46611 * 152.49574 * 13 11 10 36 36 H 1.08001 * 126.12198 * 0.02562 * 15 14 13 37 37 H 1.07996 * 126.04528 * 180.02562 * 16 15 14 38 38 H 1.07995 * 125.89574 * 180.02562 * 17 16 15 39 39 H 1.08997 * 113.61995 * 270.88005 * 19 11 10 40 40 H 1.09007 * 113.68978 * 139.99003 * 19 11 10 41 41 H 0.96702 * 114.00600 * 270.02448 * 21 20 4 42 42 H 1.08999 * 109.47351 * 314.97963 * 23 22 20 43 43 H 0.96697 * 114.00803 * 59.99849 * 24 23 22 44 44 H 1.48502 * 109.99740 * 180.02562 * 25 23 22 45 45 H 1.48504 * 109.99846 * 301.31832 * 25 23 22 46 46 H 1.08006 * 119.80102 * 179.74660 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1951 0.0000 4 6 3.5898 1.1965 0.0005 5 6 4.3304 2.4726 0.0011 6 8 5.5464 2.4698 0.0021 7 7 3.6592 3.6413 0.0005 8 6 4.3947 4.9084 0.0005 9 1 5.4018 4.8132 0.4063 10 6 4.3378 5.6535 -1.3435 11 6 4.1894 6.9495 -0.5291 12 1 5.1402 7.4144 -0.2687 13 6 3.1888 7.9392 -1.1293 14 7 3.8722 8.7955 -2.1019 15 6 3.5154 8.9744 -3.3910 16 6 4.3974 9.8366 -3.9472 17 6 5.3255 10.1966 -2.9645 18 7 5.0085 9.5772 -1.8566 19 6 3.5991 6.0823 0.5953 20 6 4.2837 -0.0210 0.0005 21 8 5.6401 -0.0322 0.0005 22 6 3.5771 -1.2146 -0.0005 23 6 4.3174 -2.5273 -0.0011 24 8 4.8549 -2.7715 1.3002 25 14 3.1446 -3.9014 -0.4565 26 6 2.1967 -1.2016 -0.0011 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6511 2.1294 0.0004 31 1 2.6892 3.6436 0.0001 32 1 5.2660 5.5992 -1.9124 33 1 3.4592 5.4102 -1.9409 34 1 2.3891 7.3907 -1.6268 35 1 2.7671 8.5559 -0.3354 36 1 2.6757 8.5127 -3.8891 37 1 4.3869 10.1853 -4.9693 38 1 6.1570 10.8730 -3.0963 39 1 2.5186 5.9562 0.5281 40 1 3.9300 6.3733 1.5924 41 1 6.0335 -0.0351 -0.8828 42 1 5.1288 -2.4865 -0.7277 43 1 4.1879 -2.8204 1.9986 44 1 3.8623 -5.2014 -0.4600 45 1 2.0167 -3.9470 0.5085 46 1 1.6511 -2.1337 -0.0061 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_13422088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:35:20 Heat of formation + Delta-G solvation = 26.628034 kcal Electronic energy + Delta-G solvation = -29308.323384 eV Core-core repulsion = 25167.535577 eV Total energy + Delta-G solvation = -4140.787807 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.08391 -41.78997 -40.68637 -39.28803 -38.05588 -37.77992 -35.22241 -33.77811 -33.05469 -32.47787 -30.96492 -28.55184 -27.52341 -26.80504 -26.77516 -25.62183 -23.63842 -22.10485 -21.97878 -21.65674 -21.48058 -20.44288 -19.65920 -18.45799 -18.35048 -17.92031 -17.53154 -16.86116 -16.82692 -16.35353 -16.17182 -16.06829 -15.87430 -15.65731 -15.30769 -14.93665 -14.86724 -14.51054 -14.42882 -14.23579 -14.15218 -13.66495 -13.58829 -13.50004 -13.40100 -13.30180 -12.92505 -12.85723 -12.52501 -12.32430 -12.25871 -11.90485 -11.81959 -11.72081 -11.55707 -11.47045 -11.02431 -10.54663 -10.33207 -10.26371 -10.01077 -9.50635 -9.46531 -4.96327 -0.35642 0.07390 1.01933 1.23940 1.53885 1.66723 1.70407 1.92698 1.96487 2.05794 2.54756 3.16108 3.32419 3.36998 3.47875 3.49168 3.54739 3.60386 3.75165 3.78413 3.91680 4.10016 4.11361 4.16147 4.20723 4.31672 4.38771 4.49730 4.52059 4.60866 4.62926 4.65702 4.74484 4.79627 4.83069 4.90539 4.91397 4.95668 4.97974 5.01108 5.15645 5.17461 5.21215 5.26023 5.42919 5.51012 5.68679 5.76004 6.21292 6.45147 6.45791 6.71951 6.79476 7.15048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.058 4.058 4 C -0.181 4.181 5 C 0.554 3.446 6 O -0.569 6.569 7 N -0.699 5.699 8 C 0.118 3.882 9 H 0.083 0.917 10 C -0.137 4.137 11 C -0.115 4.115 12 H 0.078 0.922 13 C 0.141 3.859 14 N -0.375 5.375 15 C 0.055 3.945 16 C -0.295 4.295 17 C 0.027 3.973 18 N -0.340 5.340 19 C -0.117 4.117 20 C 0.162 3.838 21 O -0.493 6.493 22 C -0.154 4.154 23 C -0.086 4.086 24 O -0.548 6.548 25 Si 0.786 3.214 26 C -0.080 4.080 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.164 0.836 31 H 0.417 0.583 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.133 0.867 35 H 0.093 0.907 36 H 0.209 0.791 37 H 0.160 0.840 38 H 0.193 0.807 39 H 0.125 0.875 40 H 0.079 0.921 41 H 0.401 0.599 42 H 0.113 0.887 43 H 0.383 0.617 44 H -0.306 1.306 45 H -0.266 1.266 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.961 -0.030 -4.612 13.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.077 4.077 4 C -0.184 4.184 5 C 0.342 3.658 6 O -0.449 6.449 7 N -0.352 5.352 8 C 0.012 3.988 9 H 0.101 0.899 10 C -0.176 4.176 11 C -0.135 4.135 12 H 0.096 0.904 13 C 0.021 3.979 14 N -0.158 5.158 15 C -0.091 4.091 16 C -0.324 4.324 17 C -0.158 4.158 18 N -0.163 5.163 19 C -0.156 4.156 20 C 0.115 3.885 21 O -0.305 6.305 22 C -0.155 4.155 23 C -0.194 4.194 24 O -0.356 6.356 25 Si 0.690 3.310 26 C -0.098 4.098 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.181 0.819 31 H 0.256 0.744 32 H 0.064 0.936 33 H 0.129 0.871 34 H 0.151 0.849 35 H 0.111 0.889 36 H 0.225 0.775 37 H 0.178 0.822 38 H 0.210 0.790 39 H 0.143 0.857 40 H 0.098 0.902 41 H 0.260 0.740 42 H 0.130 0.870 43 H 0.232 0.768 44 H -0.234 1.234 45 H -0.192 1.192 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.745 -1.014 -2.751 12.106 hybrid contribution 0.737 0.485 -0.040 0.884 sum -11.008 -0.529 -2.792 11.369 Atomic orbital electron populations 1.20927 0.87903 1.04919 1.03629 1.20125 0.98144 0.91695 0.99382 1.21442 0.90754 0.99996 0.95458 1.20416 0.95183 0.92370 1.10468 1.18433 0.86922 0.84658 0.75748 1.90819 1.15326 1.87990 1.50729 1.45721 1.10750 1.04254 1.74440 1.22400 0.96915 0.81682 0.97761 0.89887 1.23533 1.02795 0.94642 0.96611 1.22513 0.99636 0.93806 0.97541 0.90365 1.22025 0.93734 0.90723 0.91461 1.48968 1.22029 1.35228 1.09529 1.23193 1.01325 0.99432 0.85155 1.21872 1.00097 1.07937 1.02497 1.24307 1.00816 0.99794 0.90873 1.77270 1.02906 1.11273 1.24833 1.23328 1.01987 0.92025 0.98231 1.18592 0.83465 0.90975 0.95441 1.84764 1.15587 1.96080 1.34115 1.20643 0.94669 0.94957 1.05247 1.25332 1.05974 1.00247 0.87801 1.86640 1.38033 1.93502 1.17391 0.94080 0.75496 0.73038 0.88413 1.21420 0.92139 0.99852 0.96351 0.90215 0.89352 0.89948 0.81900 0.74439 0.93648 0.87128 0.84885 0.88893 0.77462 0.82228 0.78979 0.85662 0.90212 0.73964 0.86956 0.76802 1.23437 1.19214 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.35 10.00 71.24 0.71 2.06 16 2 C -0.09 0.57 5.87 -19.90 -0.12 0.45 16 3 C -0.06 0.30 9.18 22.52 0.21 0.50 16 4 C -0.18 -0.51 5.89 -20.01 -0.12 -0.63 16 5 C 0.55 3.55 7.76 86.70 0.67 4.22 16 6 O -0.57 -9.28 14.76 16.90 0.25 -9.03 16 7 N -0.70 1.49 5.30 -443.19 -2.35 -0.86 16 8 C 0.12 -0.07 4.24 45.52 0.19 0.12 16 9 H 0.08 0.58 7.46 -2.39 -0.02 0.56 16 10 C -0.14 0.31 7.43 31.12 0.23 0.54 16 11 C -0.12 0.36 3.87 -10.27 -0.04 0.32 16 12 H 0.08 0.29 7.97 -2.39 -0.02 0.27 16 13 C 0.14 -0.80 6.34 86.38 0.55 -0.25 16 14 N -0.37 -0.64 3.68 -348.07 -1.28 -1.92 16 15 C 0.06 -0.06 11.45 83.54 0.96 0.89 16 16 C -0.29 -0.54 10.80 21.99 0.24 -0.30 16 17 C 0.03 0.15 12.03 85.24 1.03 1.17 16 18 N -0.34 -2.86 12.28 -57.02 -0.70 -3.56 16 19 C -0.12 0.82 7.39 31.12 0.23 1.05 16 20 C 0.16 0.95 6.69 22.84 0.15 1.10 16 21 O -0.49 -5.11 10.91 -68.69 -0.75 -5.86 16 22 C -0.15 -0.16 5.27 -19.80 -0.10 -0.27 16 23 C -0.09 -0.12 2.38 71.24 0.17 0.05 16 24 O -0.55 -3.62 12.88 -148.98 -1.92 -5.53 16 25 Si 0.79 -2.54 30.24 68.60 2.07 -0.46 16 26 C -0.08 0.31 8.31 22.30 0.19 0.50 16 27 H 0.08 -0.92 8.14 -2.38 -0.02 -0.94 16 28 H 0.09 -1.26 8.08 -2.39 -0.02 -1.28 16 29 H 0.08 -1.04 8.08 -2.38 -0.02 -1.06 16 30 H 0.16 -2.07 6.40 -2.91 -0.02 -2.09 16 31 H 0.42 -4.22 6.76 -92.71 -0.63 -4.85 16 32 H 0.04 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.11 -0.80 7.90 -2.39 -0.02 -0.82 16 34 H 0.13 -1.75 7.77 -2.39 -0.02 -1.76 16 35 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 36 H 0.21 -2.02 8.06 -2.91 -0.02 -2.05 16 37 H 0.16 -0.32 8.06 -2.91 -0.02 -0.34 16 38 H 0.19 0.14 8.06 -2.91 -0.02 0.12 16 39 H 0.13 -1.71 8.08 -2.39 -0.02 -1.73 16 40 H 0.08 -0.43 8.14 -2.38 -0.02 -0.45 16 41 H 0.40 1.46 9.06 -74.06 -0.67 0.79 16 42 H 0.11 0.12 7.83 -2.39 -0.02 0.10 16 43 H 0.38 0.04 8.70 -74.06 -0.64 -0.60 16 44 H -0.31 -1.63 7.11 99.48 0.71 -0.93 16 45 H -0.27 0.54 6.69 99.48 0.67 1.21 16 46 H 0.15 -1.18 4.83 -2.91 -0.01 -1.20 16 Total: 0.00 -32.77 384.39 -0.43 -33.20 By element: Atomic # 1 Polarization: -16.61 SS G_CDS: -0.90 Total: -17.51 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 5.14 Total: 11.54 kcal Atomic # 7 Polarization: -2.02 SS G_CDS: -4.33 Total: -6.35 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -2.42 Total: -20.42 kcal Atomic # 14 Polarization: -2.54 SS G_CDS: 2.07 Total: -0.46 kcal Total: -32.77 -0.43 -33.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13422088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.828 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds