Wall clock time and date at job start Sun Mar 7 2021 02:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39055 * 110.99854 * 236.04434 * 2 1 3 5 5 C 1.39189 * 119.93336 * 239.73141 * 4 2 1 6 6 C 1.50699 * 119.96513 * 359.97438 * 5 4 2 7 7 O 1.42897 * 109.46965 * 75.00563 * 6 5 4 8 8 Si 1.86299 * 109.47243 * 195.00125 * 6 5 4 9 9 C 1.37634 * 120.06841 * 179.72480 * 5 4 2 10 10 C 1.39773 * 119.92800 * 0.54663 * 9 5 4 11 11 C 1.47523 * 120.06701 * 179.74343 * 10 9 5 12 12 O 1.21593 * 120.00052 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99932 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00083 * 180.02562 * 13 11 10 15 15 H 1.08999 * 112.84688 * 25.33053 * 14 13 11 16 16 C 1.53775 * 113.61496 * 156.52828 * 14 13 11 17 17 C 1.53783 * 87.08249 * 139.98187 * 16 14 13 18 18 H 1.08997 * 113.61753 * 89.19746 * 17 16 14 19 19 C 1.53001 * 113.61363 * 220.02261 * 17 16 14 20 20 N 1.46505 * 109.47119 * 184.99706 * 19 17 16 21 21 C 1.34946 * 126.03598 * 124.71351 * 20 19 17 22 22 C 1.35322 * 107.74146 * 179.84078 * 21 20 19 23 23 C 1.39869 * 107.91952 * 0.42287 * 22 21 20 24 24 N 1.30829 * 108.20418 * 359.73851 * 23 22 21 25 25 C 1.53781 * 113.61381 * 254.13585 * 14 13 11 26 26 C 1.39813 * 119.86667 * 359.72615 * 10 9 5 27 27 C 1.37595 * 119.92779 * 359.97438 * 26 10 9 28 28 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 29 29 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 30 30 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 31 31 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 32 32 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 34 34 H 1.08996 * 109.47294 * 315.00141 * 6 5 4 35 35 H 0.96696 * 114.00429 * 59.99349 * 7 6 5 36 36 H 1.48496 * 110.00301 * 180.02562 * 8 6 5 37 37 H 1.48499 * 110.00206 * 301.32157 * 8 6 5 38 38 H 1.08001 * 120.03741 * 180.24820 * 9 5 4 39 39 H 0.97002 * 119.99714 * 0.02562 * 13 11 10 40 40 H 1.08998 * 113.61652 * 254.52731 * 16 14 13 41 41 H 1.08999 * 113.61505 * 25.34737 * 16 14 13 42 42 H 1.09001 * 109.46750 * 304.99532 * 19 17 16 43 43 H 1.08994 * 109.47267 * 64.99842 * 19 17 16 44 44 H 1.07995 * 126.12877 * 359.97438 * 21 20 19 45 45 H 1.08002 * 126.03908 * 180.15977 * 22 21 20 46 46 H 1.08002 * 125.89680 * 179.76033 * 23 22 21 47 47 H 1.09005 * 113.61241 * 334.56688 * 25 14 13 48 48 H 1.08997 * 113.61314 * 105.46716 * 25 14 13 49 49 H 1.07994 * 120.03772 * 180.02562 * 26 10 9 50 50 H 1.07996 * 119.96661 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7251 -1.0768 5 6 2.7838 -1.8297 -0.8521 6 6 3.1270 -2.2377 0.5575 7 8 1.9958 -2.8707 1.1588 8 14 4.5610 -3.4265 0.5282 9 6 3.2739 -2.5528 -1.9157 10 6 2.9602 -2.1700 -3.2228 11 6 3.4885 -2.9395 -4.3653 12 8 4.1980 -3.9075 -4.1703 13 7 3.1848 -2.5694 -5.6251 14 6 3.7089 -3.3339 -6.7597 15 1 3.9366 -4.3686 -6.5037 16 6 2.8721 -3.1861 -8.0413 17 6 4.2029 -3.1372 -8.8106 18 1 4.5661 -4.1180 -9.1174 19 6 4.2151 -2.1159 -9.9498 20 7 5.4729 -2.2279 -10.6925 21 6 5.5951 -2.4361 -12.0202 22 6 6.9159 -2.4733 -12.3120 23 6 7.6252 -2.2909 -11.1203 24 7 6.7613 -2.1437 -10.1489 25 6 4.8457 -2.6205 -7.5106 26 6 2.1445 -1.0566 -3.4455 27 6 1.6526 -0.3415 -2.3778 28 1 -0.3634 -1.0252 0.0708 29 1 -0.3633 0.4513 -0.9233 30 1 -0.3633 0.5740 0.8525 31 1 1.6461 1.8947 0.8901 32 1 3.0851 1.3422 0.0005 33 1 1.6460 1.8948 -0.8900 34 1 3.3990 -1.3545 1.1354 35 1 1.6978 -3.6658 0.6961 36 1 4.9089 -3.8370 1.9123 37 1 4.2143 -4.6209 -0.2832 38 1 3.9042 -3.4122 -1.7406 39 1 2.6191 -1.7969 -5.7807 40 1 2.2669 -4.0629 -8.2712 41 1 2.3050 -2.2564 -8.0877 42 1 3.3784 -2.3102 -10.6208 43 1 4.1247 -1.1109 -9.5377 44 1 4.7840 -2.5503 -12.7241 45 1 7.3464 -2.6222 -13.2913 46 1 8.7004 -2.2741 -11.0196 47 1 4.8202 -1.5352 -7.4122 48 1 5.8313 -3.0415 -7.3125 49 1 1.9000 -0.7586 -4.4543 50 1 1.0220 0.5184 -2.5491 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_13422196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:35:25 Heat of formation + Delta-G solvation = 91.432564 kcal Electronic energy + Delta-G solvation = -31142.391904 eV Core-core repulsion = 26946.595276 eV Total energy + Delta-G solvation = -4195.796628 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.05711 -41.74442 -40.83273 -39.47855 -37.94002 -37.24080 -35.27610 -33.69199 -32.68032 -31.30670 -30.90416 -28.55821 -28.50907 -26.92477 -26.72732 -26.31087 -24.21779 -23.11289 -22.75226 -21.90120 -21.54647 -21.37254 -20.64861 -19.09810 -18.25021 -17.97954 -17.67957 -17.37261 -16.65383 -16.53573 -16.28337 -16.25954 -16.00334 -15.71454 -15.62770 -15.41265 -15.10655 -14.91306 -14.83786 -14.71644 -14.18796 -13.99692 -13.98797 -13.58545 -13.48166 -13.47189 -13.41481 -13.13337 -13.00311 -12.91085 -12.66103 -12.62198 -12.23626 -12.19031 -11.88001 -11.83926 -11.60556 -11.36505 -11.07566 -10.58909 -10.32482 -10.19972 -10.12605 -9.77544 -9.47860 -9.46938 -5.00642 -0.38999 0.14247 1.02983 1.25109 1.51603 1.62629 1.70079 1.85916 1.97535 2.04829 2.61342 2.80784 3.34240 3.42501 3.44783 3.55079 3.61633 3.69837 3.76919 3.78501 3.99997 4.04376 4.10402 4.14716 4.22346 4.24369 4.31893 4.39261 4.39591 4.46383 4.53657 4.62515 4.67592 4.69424 4.70537 4.78262 4.81823 4.82222 4.93669 4.98205 4.99447 5.00791 5.04143 5.05526 5.12038 5.17420 5.19367 5.25776 5.50225 5.56793 5.77398 5.87534 6.21903 6.30292 6.43674 6.50016 6.81421 7.10607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.523 5.523 3 C 0.025 3.975 4 C 0.141 3.859 5 C -0.110 4.110 6 C -0.045 4.045 7 O -0.532 6.532 8 Si 0.733 3.267 9 C -0.069 4.069 10 C -0.149 4.149 11 C 0.556 3.444 12 O -0.583 6.583 13 N -0.698 5.698 14 C 0.114 3.886 15 H 0.089 0.911 16 C -0.113 4.113 17 C -0.111 4.111 18 H 0.082 0.918 19 C 0.139 3.861 20 N -0.377 5.377 21 C 0.053 3.947 22 C -0.294 4.294 23 C 0.024 3.976 24 N -0.331 5.331 25 C -0.133 4.133 26 C -0.054 4.054 27 C -0.155 4.155 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.126 0.874 35 H 0.379 0.621 36 H -0.292 1.292 37 H -0.294 1.294 38 H 0.128 0.872 39 H 0.417 0.583 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.094 0.906 44 H 0.207 0.793 45 H 0.159 0.841 46 H 0.192 0.808 47 H 0.093 0.907 48 H 0.044 0.956 49 H 0.162 0.838 50 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.094 6.564 -6.458 11.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.244 5.244 3 C -0.121 4.121 4 C 0.047 3.953 5 C -0.112 4.112 6 C -0.156 4.156 7 O -0.339 6.339 8 Si 0.640 3.360 9 C -0.088 4.088 10 C -0.152 4.152 11 C 0.345 3.655 12 O -0.464 6.464 13 N -0.349 5.349 14 C 0.009 3.991 15 H 0.107 0.893 16 C -0.152 4.152 17 C -0.131 4.131 18 H 0.100 0.900 19 C 0.019 3.981 20 N -0.160 5.160 21 C -0.094 4.094 22 C -0.323 4.323 23 C -0.161 4.161 24 N -0.153 5.153 25 C -0.172 4.172 26 C -0.073 4.073 27 C -0.175 4.175 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.144 0.856 35 H 0.227 0.773 36 H -0.220 1.220 37 H -0.221 1.221 38 H 0.145 0.855 39 H 0.256 0.744 40 H 0.108 0.892 41 H 0.139 0.861 42 H 0.149 0.851 43 H 0.112 0.888 44 H 0.224 0.776 45 H 0.177 0.823 46 H 0.209 0.791 47 H 0.112 0.888 48 H 0.063 0.937 49 H 0.180 0.820 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.411 5.594 -3.937 8.722 hybrid contribution -0.845 -0.474 -1.483 1.772 sum -6.257 5.120 -5.420 9.733 Atomic orbital electron populations 1.22433 0.84592 1.02540 1.01831 1.59366 1.09492 1.15003 1.40563 1.22543 1.01057 0.86291 1.02207 1.18952 0.93806 0.92946 0.89644 1.20107 0.99478 0.96139 0.95443 1.24725 0.95421 1.03735 0.91722 1.86625 1.47224 1.44689 1.55366 0.94360 0.83723 0.80043 0.77854 1.21185 0.97383 0.98586 0.91655 1.19836 1.03542 0.99115 0.92709 1.18511 0.79517 0.83391 0.84078 1.90794 1.39694 1.29842 1.86057 1.45747 1.52181 1.32701 1.04308 1.22528 0.95938 0.96147 0.84460 0.89282 1.23300 0.95355 1.05288 0.91224 1.22522 0.98127 0.98998 0.93455 0.90008 1.22032 0.81317 1.00409 0.94345 1.49011 1.05838 1.54973 1.06141 1.23196 0.99869 0.99998 0.86296 1.21864 0.93063 1.16960 1.00442 1.24312 1.00780 0.99703 0.91284 1.77328 0.88654 1.25443 1.23846 1.23438 0.97636 1.01096 0.95032 1.21439 0.93206 0.91845 1.00787 1.21871 1.01838 1.01592 0.92193 0.92062 0.93819 0.90087 0.89950 0.91002 0.93841 0.85650 0.77283 1.21986 1.22144 0.85459 0.74409 0.89172 0.86087 0.85065 0.88757 0.77610 0.82332 0.79088 0.88842 0.93724 0.82044 0.83123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 9.34 127.69 1.19 1.12 16 2 N -0.52 0.19 4.20 -745.08 -3.13 -2.94 16 3 C 0.02 -0.10 9.32 127.69 1.19 1.09 16 4 C 0.14 0.02 4.69 38.47 0.18 0.20 16 5 C -0.11 -0.28 5.27 -19.78 -0.10 -0.38 16 6 C -0.05 -0.14 2.33 71.24 0.17 0.03 16 7 O -0.53 -2.80 12.88 -148.98 -1.92 -4.72 16 8 Si 0.73 3.02 30.25 68.60 2.08 5.09 16 9 C -0.07 -0.31 8.19 22.50 0.18 -0.13 16 10 C -0.15 -0.32 5.88 -20.08 -0.12 -0.44 16 11 C 0.56 3.14 7.76 86.69 0.67 3.81 16 12 O -0.58 -8.96 15.95 -4.01 -0.06 -9.02 16 13 N -0.70 1.53 5.31 -443.21 -2.35 -0.82 16 14 C 0.11 -0.12 4.21 45.52 0.19 0.07 16 15 H 0.09 0.45 7.50 -2.39 -0.02 0.43 16 16 C -0.11 0.99 7.39 31.12 0.23 1.22 16 17 C -0.11 0.48 3.83 -10.21 -0.04 0.44 16 18 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 19 C 0.14 -0.87 6.35 86.38 0.55 -0.33 16 20 N -0.38 -0.47 3.68 -348.06 -1.28 -1.75 16 21 C 0.05 -0.06 11.45 83.54 0.96 0.89 16 22 C -0.29 -0.49 10.80 21.99 0.24 -0.25 16 23 C 0.02 0.12 12.02 85.24 1.02 1.15 16 24 N -0.33 -2.49 12.42 -57.03 -0.71 -3.20 16 25 C -0.13 -0.01 7.45 31.18 0.23 0.22 16 26 C -0.05 0.25 9.53 22.50 0.21 0.46 16 27 C -0.16 0.61 8.57 22.36 0.19 0.80 16 28 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.04 -0.22 7.09 -2.39 -0.02 -0.24 16 30 H 0.08 -0.27 8.14 -2.38 -0.02 -0.29 16 31 H 0.08 -0.40 8.14 -2.38 -0.02 -0.42 16 32 H 0.07 -0.25 8.12 -2.39 -0.02 -0.27 16 33 H 0.04 -0.27 7.45 -2.39 -0.02 -0.28 16 34 H 0.13 0.31 7.78 -2.39 -0.02 0.29 16 35 H 0.38 0.15 8.70 -74.06 -0.64 -0.49 16 36 H -0.29 -3.01 7.11 99.48 0.71 -2.30 16 37 H -0.29 -2.96 6.68 99.48 0.66 -2.30 16 38 H 0.13 0.97 4.43 -2.91 -0.01 0.95 16 39 H 0.42 -4.08 6.73 -92.71 -0.62 -4.70 16 40 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 41 H 0.12 -1.73 8.07 -2.39 -0.02 -1.75 16 42 H 0.13 -1.69 8.07 -2.39 -0.02 -1.71 16 43 H 0.09 -0.72 7.85 -2.39 -0.02 -0.74 16 44 H 0.21 -1.94 8.06 -2.91 -0.02 -1.97 16 45 H 0.16 -0.32 8.06 -2.91 -0.02 -0.34 16 46 H 0.19 0.10 8.06 -2.91 -0.02 0.08 16 47 H 0.09 -0.14 7.90 -2.38 -0.02 -0.16 16 48 H 0.04 0.31 8.14 -2.39 -0.02 0.30 16 49 H 0.16 -1.97 6.39 -2.91 -0.02 -1.99 16 50 H 0.15 -1.22 7.01 -2.91 -0.02 -1.24 16 Total: 0.00 -26.90 408.98 -0.53 -27.43 By element: Atomic # 1 Polarization: -19.74 SS G_CDS: -0.30 Total: -20.05 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 7.15 Total: 9.97 kcal Atomic # 7 Polarization: -1.24 SS G_CDS: -7.47 Total: -8.71 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -1.98 Total: -13.74 kcal Atomic # 14 Polarization: 3.02 SS G_CDS: 2.08 Total: 5.09 kcal Total: -26.90 -0.53 -27.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13422196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.863 kcal (2) G-P(sol) polarization free energy of solvation -26.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds