Wall clock time and date at job start Sun Mar 7 2021 02:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86308 * 109.47108 * 2 1 4 4 C 1.50702 * 109.47178 * 240.00092 * 2 1 3 5 5 C 1.32694 * 124.68319 * 300.00195 * 4 2 1 6 6 C 1.44508 * 113.09410 * 179.97438 * 5 4 2 7 7 C 1.47045 * 123.48856 * 179.97438 * 6 5 4 8 8 O 1.21655 * 120.00400 * 179.97438 * 7 6 5 9 9 N 1.34779 * 120.00250 * 359.97438 * 7 6 5 10 10 C 1.46497 * 120.00208 * 180.02562 * 9 7 6 11 11 H 1.08998 * 112.85217 * 23.80043 * 10 9 7 12 12 C 1.53784 * 113.61428 * 154.99904 * 10 9 7 13 13 C 1.53783 * 87.08148 * 140.06383 * 12 10 9 14 14 H 1.08995 * 113.61432 * 89.19867 * 13 12 10 15 15 C 1.52998 * 113.61251 * 220.01942 * 13 12 10 16 16 N 1.46502 * 109.47046 * 184.99780 * 15 13 12 17 17 C 1.34953 * 126.03718 * 125.00175 * 16 15 13 18 18 C 1.35312 * 107.74266 * 180.24977 * 17 16 15 19 19 C 1.39863 * 107.92527 * 359.64076 * 18 17 16 20 20 N 1.30837 * 108.19940 * 0.36269 * 19 18 17 21 21 C 1.53779 * 87.08144 * 334.56747 * 13 12 10 22 22 C 1.36225 * 113.01912 * 0.22960 * 6 5 4 23 23 Cl 1.73602 * 124.60259 * 179.76884 * 22 6 5 24 24 S 1.70440 * 110.78755 * 359.64910 * 22 6 5 25 25 H 0.96698 * 113.99953 * 60.00063 * 1 2 3 26 26 H 1.08998 * 109.47371 * 119.99683 * 2 1 3 27 27 H 1.48495 * 110.00002 * 298.68283 * 3 2 1 28 28 H 1.48495 * 109.99765 * 60.00160 * 3 2 1 29 29 H 1.07989 * 123.44972 * 359.97438 * 5 4 2 30 30 H 0.97006 * 119.99438 * 359.97438 * 9 7 6 31 31 H 1.09000 * 113.61472 * 25.51672 * 12 10 9 32 32 H 1.08994 * 113.61739 * 254.61186 * 12 10 9 33 33 H 1.08999 * 109.47688 * 65.00068 * 15 13 12 34 34 H 1.08997 * 109.47597 * 305.00185 * 15 13 12 35 35 H 1.08002 * 126.12372 * 359.97438 * 17 16 15 36 36 H 1.08008 * 126.03698 * 179.76435 * 18 17 16 37 37 H 1.08001 * 125.90034 * 180.14354 * 19 18 17 38 38 H 1.08998 * 113.61888 * 139.98362 * 21 13 12 39 39 H 1.09003 * 113.61675 * 270.88542 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6686 -1.9756 -1.5321 6 6 2.2769 -2.4008 -2.7720 7 6 2.1348 -3.7570 -3.3222 8 8 2.6747 -4.0468 -4.3731 9 7 1.4064 -4.6792 -2.6622 10 6 1.2653 -6.0305 -3.2100 11 1 2.0781 -6.3011 -3.8840 12 6 0.9666 -7.0989 -2.1451 13 6 -0.0089 -7.7225 -3.1573 14 1 0.4553 -8.4566 -3.8158 15 6 -1.3074 -8.2281 -2.5255 16 7 -2.1134 -8.9073 -3.5430 17 6 -2.5927 -10.1665 -3.4658 18 6 -3.2783 -10.4172 -4.6052 19 6 -3.2227 -9.2694 -5.4024 20 7 -2.5222 -8.3647 -4.7680 21 6 -0.1321 -6.3227 -3.7819 22 6 3.0001 -1.4167 -3.3755 23 17 3.8593 -1.6017 -4.8726 24 16 2.9439 0.0216 -2.4628 25 1 -0.3933 0.4417 -0.7650 26 1 1.7923 -0.5138 0.8900 27 1 1.5879 2.4586 -1.2242 28 1 1.5615 2.4679 1.2085 29 1 1.0624 -2.6213 -0.9142 30 1 0.9762 -4.4482 -1.8240 31 1 0.4781 -6.7033 -1.2546 32 1 1.8208 -7.7350 -1.9131 33 1 -1.8676 -7.3847 -2.1217 34 1 -1.0728 -8.9263 -1.7220 35 1 -2.4505 -10.8527 -2.6440 36 1 -3.7813 -11.3400 -4.8540 37 1 -3.6765 -9.1516 -6.3754 38 1 -0.1648 -6.3319 -4.8713 39 1 -0.9209 -5.7147 -3.3389 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_13431040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:35:34 Heat of formation + Delta-G solvation = 75.676906 kcal Electronic energy + Delta-G solvation = -25511.821959 eV Core-core repulsion = 21576.733336 eV Total energy + Delta-G solvation = -3935.088623 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.059 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.05316 -41.33235 -39.84916 -38.82893 -37.98682 -37.02625 -35.14751 -33.50103 -31.67418 -30.94785 -28.68422 -26.94169 -26.72278 -26.13846 -23.63946 -22.24745 -21.90901 -21.49214 -21.12014 -20.39374 -19.40107 -18.34996 -18.01041 -17.75020 -17.09927 -16.52868 -16.51163 -16.08089 -15.96192 -15.78358 -15.53130 -15.11306 -14.88537 -14.74989 -14.44455 -14.39609 -13.97042 -13.90400 -13.54627 -13.48507 -13.43411 -12.96382 -12.92783 -12.61027 -12.49680 -12.27798 -12.07676 -11.84471 -11.82141 -11.61264 -11.35715 -10.99362 -10.74285 -10.33588 -10.16409 -9.88386 -9.65932 -9.48194 -5.05701 -0.64531 -0.19972 0.47397 0.70652 1.01768 1.03680 1.18676 1.53226 1.68754 1.89479 1.96322 2.14201 2.16758 3.23270 3.34239 3.45285 3.47138 3.66834 3.75978 3.82814 3.88616 3.99489 4.09475 4.21420 4.30525 4.37358 4.42321 4.54213 4.69583 4.73523 4.76487 4.77946 4.81870 4.92637 4.96104 4.99715 5.04898 5.16492 5.19764 5.53137 5.76100 6.20886 6.40328 6.45047 6.80220 7.13300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.026 4.026 3 Si 0.703 3.297 4 C -0.225 4.225 5 C -0.067 4.067 6 C -0.167 4.167 7 C 0.569 3.431 8 O -0.564 6.564 9 N -0.697 5.697 10 C 0.117 3.883 11 H 0.091 0.909 12 C -0.113 4.113 13 C -0.110 4.110 14 H 0.082 0.918 15 C 0.139 3.861 16 N -0.377 5.377 17 C 0.053 3.947 18 C -0.294 4.294 19 C 0.024 3.976 20 N -0.332 5.332 21 C -0.134 4.134 22 C -0.141 4.141 23 Cl 0.001 6.999 24 S 0.264 5.736 25 H 0.389 0.611 26 H 0.152 0.848 27 H -0.261 1.261 28 H -0.268 1.268 29 H 0.182 0.818 30 H 0.416 0.584 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.208 0.792 36 H 0.160 0.840 37 H 0.192 0.808 38 H 0.042 0.958 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 -0.796 8.924 8.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.139 4.139 3 Si 0.605 3.395 4 C -0.342 4.342 5 C -0.096 4.096 6 C -0.187 4.187 7 C 0.355 3.645 8 O -0.443 6.443 9 N -0.348 5.348 10 C 0.012 3.988 11 H 0.109 0.891 12 C -0.151 4.151 13 C -0.130 4.130 14 H 0.101 0.899 15 C 0.019 3.981 16 N -0.160 5.160 17 C -0.093 4.093 18 C -0.323 4.323 19 C -0.161 4.161 20 N -0.154 5.154 21 C -0.173 4.173 22 C -0.288 4.288 23 Cl 0.029 6.971 24 S 0.529 5.471 25 H 0.239 0.761 26 H 0.170 0.830 27 H -0.187 1.187 28 H -0.193 1.193 29 H 0.199 0.801 30 H 0.254 0.746 31 H 0.137 0.863 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.150 0.850 35 H 0.225 0.775 36 H 0.177 0.823 37 H 0.209 0.791 38 H 0.061 0.939 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.170 2.214 8.479 8.841 hybrid contribution -2.024 -2.282 -0.964 3.199 sum -0.854 -0.069 7.515 7.564 Atomic orbital electron populations 1.86618 1.17355 1.80082 1.50216 1.24477 0.83580 1.09739 0.96077 0.94557 0.90731 0.74065 0.80137 1.24891 1.07326 0.99041 1.02971 1.21123 0.99294 0.95490 0.93661 1.20359 1.05012 0.94786 0.98529 1.17788 0.78461 0.84477 0.83796 1.90858 1.48730 1.80857 1.23885 1.45676 1.51767 1.10989 1.26395 1.22500 0.97465 0.81158 0.97642 0.89076 1.23304 0.99216 0.95668 0.96953 1.22484 0.95476 0.96229 0.98830 0.89924 1.22032 0.89393 0.99111 0.87583 1.49011 1.41130 1.11045 1.14769 1.23207 0.97244 0.87767 1.01096 1.21861 1.11918 1.01840 0.96676 1.24311 0.98282 0.92330 1.01190 1.77330 1.19107 1.23996 0.94978 1.23406 0.97205 0.96542 1.00120 1.25840 1.03729 1.02573 0.96616 1.98426 1.73597 1.97261 1.27767 1.83276 1.46073 1.06795 1.10954 0.76062 0.83031 1.18657 1.19324 0.80058 0.74595 0.86257 0.89060 0.88933 0.84990 0.77544 0.82273 0.79115 0.93872 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 2.43 12.85 -148.98 -1.91 0.51 16 2 C -0.03 0.19 2.95 71.24 0.21 0.40 16 3 Si 0.70 -4.11 30.91 68.60 2.12 -1.99 16 4 C -0.22 1.11 5.68 24.52 0.14 1.25 16 5 C -0.07 0.28 9.71 22.70 0.22 0.50 16 6 C -0.17 -0.49 5.98 -19.84 -0.12 -0.61 16 7 C 0.57 3.79 7.79 86.55 0.67 4.47 16 8 O -0.56 -8.65 14.51 -4.20 -0.06 -8.71 16 9 N -0.70 0.59 5.34 -443.65 -2.37 -1.77 16 10 C 0.12 -0.01 4.24 45.52 0.19 0.18 16 11 H 0.09 0.52 7.46 -2.39 -0.02 0.51 16 12 C -0.11 0.87 7.39 31.12 0.23 1.10 16 13 C -0.11 0.36 3.83 -10.27 -0.04 0.32 16 14 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 15 C 0.14 -0.73 6.35 86.38 0.55 -0.18 16 16 N -0.38 -0.80 3.68 -348.06 -1.28 -2.08 16 17 C 0.05 -0.03 11.45 83.54 0.96 0.93 16 18 C -0.29 -0.68 10.80 21.99 0.24 -0.44 16 19 C 0.02 0.14 12.03 85.23 1.02 1.16 16 20 N -0.33 -2.82 12.42 -57.03 -0.71 -3.53 16 21 C -0.13 -0.17 7.43 31.12 0.23 0.06 16 22 C -0.14 -0.63 6.87 67.35 0.46 -0.16 16 23 Cl 0.00 0.01 27.20 -2.72 -0.07 -0.07 16 24 S 0.26 -0.58 20.17 -56.49 -1.14 -1.72 16 25 H 0.39 -3.57 8.70 -74.06 -0.64 -4.21 16 26 H 0.15 -1.60 7.96 -2.39 -0.02 -1.62 16 27 H -0.26 0.46 7.11 99.48 0.71 1.16 16 28 H -0.27 -0.19 7.11 99.48 0.71 0.51 16 29 H 0.18 -1.77 7.10 -2.92 -0.02 -1.79 16 30 H 0.42 -3.26 7.27 -92.70 -0.67 -3.93 16 31 H 0.12 -1.54 8.08 -2.39 -0.02 -1.56 16 32 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 33 H 0.09 -0.58 7.84 -2.39 -0.02 -0.60 16 34 H 0.13 -1.58 8.07 -2.39 -0.02 -1.60 16 35 H 0.21 -1.83 8.06 -2.91 -0.02 -1.85 16 36 H 0.16 -0.24 8.06 -2.91 -0.02 -0.26 16 37 H 0.19 0.25 8.06 -2.91 -0.02 0.23 16 38 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.09 0.02 7.90 -2.39 -0.02 0.00 16 Total: 0.00 -25.20 362.74 -0.62 -25.82 By element: Atomic # 1 Polarization: -15.27 SS G_CDS: -0.17 Total: -15.44 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 4.97 Total: 8.97 kcal Atomic # 7 Polarization: -3.03 SS G_CDS: -4.36 Total: -7.38 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -1.97 Total: -8.20 kcal Atomic # 14 Polarization: -4.11 SS G_CDS: 2.12 Total: -1.99 kcal Atomic # 16 Polarization: -0.58 SS G_CDS: -1.14 Total: -1.72 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.07 Total: -0.07 kcal Total: -25.20 -0.62 -25.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13431040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.498 kcal (2) G-P(sol) polarization free energy of solvation -25.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds