Wall clock time and date at job start Sun Mar 7 2021 02:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86307 * 109.47284 * 2 1 4 4 C 1.50699 * 109.47403 * 120.00155 * 2 1 3 5 5 C 1.34176 * 125.43845 * 64.98027 * 4 2 1 6 6 C 1.47016 * 105.95418 * 180.02562 * 5 4 2 7 7 C 1.47376 * 127.19272 * 180.02562 * 6 5 4 8 8 O 1.21617 * 120.00172 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00021 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99656 * 179.97438 * 9 7 6 11 11 H 1.08991 * 112.85393 * 336.20108 * 10 9 7 12 12 C 1.53781 * 113.61146 * 107.50864 * 10 9 7 13 13 C 1.53777 * 87.08569 * 139.97840 * 12 10 9 14 14 H 1.09000 * 113.69305 * 89.12115 * 13 12 10 15 15 C 1.52994 * 113.61744 * 220.01763 * 13 12 10 16 16 N 1.46496 * 109.47113 * 272.49492 * 15 13 12 17 17 C 1.34953 * 126.03501 * 124.99926 * 16 15 13 18 18 C 1.35316 * 107.74236 * 179.97438 * 17 16 15 19 19 C 1.39868 * 107.92175 * 0.02562 * 18 17 16 20 20 N 1.30830 * 108.20480 * 359.73396 * 19 18 17 21 21 C 1.53778 * 113.61325 * 204.99893 * 10 9 7 22 22 C 1.36414 * 105.61615 * 0.02562 * 6 5 4 23 23 O 1.33654 * 108.39828 * 359.97438 * 22 6 5 24 24 H 0.96699 * 113.99925 * 300.00280 * 1 2 3 25 25 H 1.09003 * 109.47422 * 240.00300 * 2 1 3 26 26 H 1.48493 * 110.00304 * 178.68193 * 3 2 1 27 27 H 1.48507 * 109.99965 * 300.00523 * 3 2 1 28 28 H 1.07998 * 127.01822 * 0.06380 * 5 4 2 29 29 H 0.96998 * 120.00207 * 0.02562 * 9 7 6 30 30 H 1.09003 * 113.61068 * 254.52940 * 12 10 9 31 31 H 1.08997 * 113.61638 * 25.42698 * 12 10 9 32 32 H 1.09007 * 109.47071 * 32.49701 * 15 13 12 33 33 H 1.08996 * 109.47296 * 152.49241 * 15 13 12 34 34 H 1.07996 * 126.12659 * 359.96225 * 17 16 15 35 35 H 1.08001 * 126.03615 * 179.97438 * 18 17 16 36 36 H 1.07998 * 125.89731 * 180.02562 * 19 18 17 37 37 H 1.09002 * 113.61469 * 334.57445 * 21 10 9 38 38 H 1.09007 * 113.61370 * 105.39217 * 21 10 9 39 39 H 1.08007 * 125.80379 * 180.26684 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7548 -2.0121 1.5038 6 6 2.4119 -2.2460 2.7980 7 6 2.4998 -3.5190 3.5353 8 8 1.9925 -4.5242 3.0757 9 7 3.1425 -3.5692 4.7189 10 6 3.2294 -4.8346 5.4521 11 1 2.4338 -5.5316 5.1893 12 6 4.6328 -5.4629 5.4322 13 6 4.4009 -5.8365 6.9057 14 1 3.9266 -6.8084 7.0418 15 6 5.6374 -5.6503 7.7872 16 7 6.4497 -6.8690 7.7528 17 6 7.7555 -6.9436 7.4204 18 6 8.1311 -8.2403 7.5129 19 6 7.0166 -8.9836 7.9150 20 7 6.0095 -8.1619 8.0643 21 6 3.4165 -4.6566 6.9681 22 6 2.9231 -1.0384 3.1738 23 8 2.6260 -0.1418 2.2281 24 1 -0.3933 0.4417 0.7650 25 1 1.7923 -0.5138 -0.8900 26 1 3.5345 1.7704 0.0321 27 1 1.5614 2.4680 -1.2085 28 1 1.2365 -2.7396 0.8967 29 1 3.5468 -2.7674 5.0857 30 1 4.7157 -6.3254 4.7709 31 1 5.4337 -4.7381 5.2863 32 1 6.2255 -4.8110 7.4157 33 1 5.3260 -5.4500 8.8124 34 1 8.3874 -6.1166 7.1320 35 1 9.1170 -8.6321 7.3109 36 1 6.9927 -10.0508 8.0789 37 1 3.8849 -3.7113 7.2422 38 1 2.5170 -4.8668 7.5467 39 1 3.4781 -0.8413 4.0791 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688084_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:35:38 Heat of formation + Delta-G solvation = 63.588165 kcal Electronic energy + Delta-G solvation = -23515.603350 eV Core-core repulsion = 19815.719633 eV Total energy + Delta-G solvation = -3699.883717 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.77119 -42.07153 -41.07363 -39.35840 -38.07690 -35.22383 -34.10144 -33.40656 -31.78989 -30.95748 -28.63951 -26.93011 -26.79167 -25.51553 -23.50945 -22.32379 -22.06002 -21.57494 -21.25695 -20.39559 -19.35087 -18.35349 -17.88357 -17.55739 -17.43991 -17.16275 -16.41024 -16.30472 -16.15542 -15.83128 -15.55163 -15.24650 -14.75569 -14.56542 -14.23288 -14.20654 -14.02440 -13.76006 -13.68831 -13.67175 -13.42792 -12.99596 -12.90768 -12.39356 -12.18558 -11.99195 -11.61442 -11.49750 -11.05746 -10.91758 -10.69182 -10.29684 -10.15822 -9.86347 -9.46684 -5.11297 0.17308 0.85483 1.01192 1.07345 1.41504 1.57006 1.71657 1.86612 2.00370 2.01229 2.28822 3.15155 3.22984 3.32153 3.34908 3.39259 3.52435 3.62665 3.81007 3.85393 3.93666 4.01648 4.18762 4.23120 4.32934 4.33682 4.42328 4.53193 4.56141 4.60522 4.70913 4.77349 4.82561 4.87737 4.91142 5.11846 5.15392 5.17479 5.42087 5.77727 5.77917 6.10168 6.34001 6.37527 6.82457 7.15245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.029 4.029 3 Si 0.707 3.293 4 C -0.058 4.058 5 C -0.123 4.123 6 C -0.238 4.238 7 C 0.588 3.412 8 O -0.529 6.529 9 N -0.718 5.718 10 C 0.127 3.873 11 H 0.119 0.881 12 C -0.147 4.147 13 C -0.120 4.120 14 H 0.110 0.890 15 C 0.146 3.854 16 N -0.371 5.371 17 C 0.052 3.948 18 C -0.275 4.275 19 C 0.044 3.956 20 N -0.295 5.295 21 C -0.137 4.137 22 C 0.031 3.969 23 O -0.165 6.165 24 H 0.384 0.616 25 H 0.134 0.866 26 H -0.254 1.254 27 H -0.247 1.247 28 H 0.162 0.838 29 H 0.398 0.602 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.172 0.828 35 H 0.147 0.853 36 H 0.183 0.817 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.763 6.248 3.790 7.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.139 4.139 3 Si 0.607 3.393 4 C -0.106 4.106 5 C -0.143 4.143 6 C -0.242 4.242 7 C 0.376 3.624 8 O -0.406 6.406 9 N -0.369 5.369 10 C 0.022 3.978 11 H 0.137 0.863 12 C -0.185 4.185 13 C -0.140 4.140 14 H 0.129 0.871 15 C 0.025 3.975 16 N -0.154 5.154 17 C -0.095 4.095 18 C -0.304 4.304 19 C -0.142 4.142 20 N -0.116 5.116 21 C -0.176 4.176 22 C -0.039 4.039 23 O -0.061 6.061 24 H 0.232 0.768 25 H 0.151 0.849 26 H -0.178 1.178 27 H -0.171 1.171 28 H 0.179 0.821 29 H 0.233 0.767 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.189 0.811 35 H 0.165 0.835 36 H 0.200 0.800 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 1.705 6.357 2.762 7.138 hybrid contribution 1.324 -0.628 -0.018 1.465 sum 3.029 5.729 2.744 7.037 Atomic orbital electron populations 1.86581 1.16080 1.81730 1.49128 1.24474 0.85299 1.11379 0.92781 0.94263 0.81325 0.76516 0.87228 1.22745 1.01698 0.93451 0.92712 1.22554 1.01067 0.95359 0.95323 1.21534 1.09147 0.94319 0.99218 1.17317 0.77609 0.87088 0.80371 1.90829 1.46451 1.35723 1.67580 1.45802 1.57539 1.12253 1.21337 1.22480 0.98471 0.86121 0.90711 0.86266 1.23568 0.97542 1.01252 0.96176 1.22702 0.95517 1.00554 0.95188 0.87137 1.21726 0.91624 0.82621 1.01571 1.48705 1.07794 1.06791 1.52083 1.22577 0.86213 0.99509 1.01157 1.21560 1.01232 0.92655 1.14963 1.23934 0.90843 1.00114 0.99280 1.77341 1.23557 0.87721 1.23019 1.23377 0.99986 0.98507 0.95686 1.24450 0.99508 0.86717 0.93258 1.83682 1.57245 1.38845 1.26354 0.76804 0.84922 1.17798 1.17117 0.82054 0.76743 0.90688 0.89583 0.88575 0.89429 0.81114 0.83542 0.80027 0.89128 0.89778 0.77002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.30 12.88 -35.23 -0.45 -0.15 16 2 C -0.03 0.03 2.97 36.01 0.11 0.14 16 3 Si 0.71 -1.29 32.09 -169.99 -5.46 -6.75 16 4 C -0.06 0.00 6.18 -35.74 -0.22 -0.22 16 5 C -0.12 -0.22 10.90 -37.46 -0.41 -0.63 16 6 C -0.24 -0.19 6.31 -103.28 -0.65 -0.85 16 7 C 0.59 1.34 7.81 -12.54 -0.10 1.24 16 8 O -0.53 -3.64 16.58 5.26 0.09 -3.55 16 9 N -0.72 1.12 5.35 -54.11 -0.29 0.83 16 10 C 0.13 -0.14 4.24 -67.12 -0.28 -0.43 16 11 H 0.12 0.15 7.46 -51.93 -0.39 -0.23 16 12 C -0.15 0.20 7.43 -25.92 -0.19 0.01 16 13 C -0.12 0.23 3.87 -89.81 -0.35 -0.12 16 14 H 0.11 0.04 7.97 -51.93 -0.41 -0.37 16 15 C 0.15 -0.32 6.34 -4.05 -0.03 -0.35 16 16 N -0.37 -0.38 3.68 -61.37 -0.23 -0.60 16 17 C 0.05 0.01 11.45 -17.22 -0.20 -0.19 16 18 C -0.27 -0.27 10.80 -40.01 -0.43 -0.70 16 19 C 0.04 0.09 12.02 -17.37 -0.21 -0.12 16 20 N -0.29 -1.02 12.28 30.62 0.38 -0.65 16 21 C -0.14 0.48 7.39 -25.92 -0.19 0.29 16 22 C 0.03 -0.07 11.61 30.07 0.35 0.27 16 23 O -0.17 0.17 8.90 7.65 0.07 0.23 16 24 H 0.38 -1.74 8.70 45.56 0.40 -1.34 16 25 H 0.13 -0.15 7.96 -51.93 -0.41 -0.56 16 26 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 27 H -0.25 -0.23 7.11 56.52 0.40 0.18 16 28 H 0.16 0.39 8.06 -52.49 -0.42 -0.03 16 29 H 0.40 -2.03 7.70 -40.82 -0.31 -2.34 16 30 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.09 -0.22 7.90 -51.93 -0.41 -0.63 16 32 H 0.10 -0.45 7.77 -51.92 -0.40 -0.86 16 33 H 0.09 -0.23 8.14 -51.93 -0.42 -0.65 16 34 H 0.17 -0.55 8.06 -52.49 -0.42 -0.97 16 35 H 0.15 -0.12 8.06 -52.49 -0.42 -0.54 16 36 H 0.18 -0.10 8.06 -52.49 -0.42 -0.52 16 37 H 0.09 -0.50 8.08 -51.93 -0.42 -0.92 16 38 H 0.08 -0.27 8.14 -51.92 -0.42 -0.69 16 39 H 0.21 -1.53 7.47 -52.48 -0.39 -1.92 16 LS Contribution 342.98 15.07 5.17 5.17 Total: 0.00 -11.29 342.98 -8.44 -19.74 By element: Atomic # 1 Polarization: -7.69 SS G_CDS: -4.91 Total: -12.60 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.80 Total: -1.66 kcal Atomic # 7 Polarization: -0.28 SS G_CDS: -0.14 Total: -0.42 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: -0.30 Total: -3.47 kcal Atomic # 14 Polarization: -1.29 SS G_CDS: -5.46 Total: -6.75 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -11.29 -8.44 -19.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.325 kcal (2) G-P(sol) polarization free energy of solvation -11.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds