Wall clock time and date at job start Sun Mar 7 2021 02:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86307 * 109.47284 * 2 1 4 4 C 1.50699 * 109.47403 * 120.00155 * 2 1 3 5 5 C 1.34176 * 125.43845 * 64.98027 * 4 2 1 6 6 C 1.47016 * 105.95418 * 180.02562 * 5 4 2 7 7 C 1.47376 * 127.19272 * 180.02562 * 6 5 4 8 8 O 1.21617 * 120.00172 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00021 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99656 * 179.97438 * 9 7 6 11 11 H 1.08991 * 112.85393 * 336.20108 * 10 9 7 12 12 C 1.53781 * 113.61146 * 107.50864 * 10 9 7 13 13 C 1.53777 * 87.08569 * 139.97840 * 12 10 9 14 14 H 1.09000 * 113.69305 * 89.12115 * 13 12 10 15 15 C 1.52994 * 113.61744 * 220.01763 * 13 12 10 16 16 N 1.46496 * 109.47113 * 272.49492 * 15 13 12 17 17 C 1.34953 * 126.03501 * 124.99926 * 16 15 13 18 18 C 1.35316 * 107.74236 * 179.97438 * 17 16 15 19 19 C 1.39868 * 107.92175 * 0.02562 * 18 17 16 20 20 N 1.30830 * 108.20480 * 359.73396 * 19 18 17 21 21 C 1.53778 * 113.61325 * 204.99893 * 10 9 7 22 22 C 1.36414 * 105.61615 * 0.02562 * 6 5 4 23 23 O 1.33654 * 108.39828 * 359.97438 * 22 6 5 24 24 H 0.96699 * 113.99925 * 300.00280 * 1 2 3 25 25 H 1.09003 * 109.47422 * 240.00300 * 2 1 3 26 26 H 1.48493 * 110.00304 * 178.68193 * 3 2 1 27 27 H 1.48507 * 109.99965 * 300.00523 * 3 2 1 28 28 H 1.07998 * 127.01822 * 0.06380 * 5 4 2 29 29 H 0.96998 * 120.00207 * 0.02562 * 9 7 6 30 30 H 1.09003 * 113.61068 * 254.52940 * 12 10 9 31 31 H 1.08997 * 113.61638 * 25.42698 * 12 10 9 32 32 H 1.09007 * 109.47071 * 32.49701 * 15 13 12 33 33 H 1.08996 * 109.47296 * 152.49241 * 15 13 12 34 34 H 1.07996 * 126.12659 * 359.96225 * 17 16 15 35 35 H 1.08001 * 126.03615 * 179.97438 * 18 17 16 36 36 H 1.07998 * 125.89731 * 180.02562 * 19 18 17 37 37 H 1.09002 * 113.61469 * 334.57445 * 21 10 9 38 38 H 1.09007 * 113.61370 * 105.39217 * 21 10 9 39 39 H 1.08007 * 125.80379 * 180.26684 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7548 -2.0121 1.5038 6 6 2.4119 -2.2460 2.7980 7 6 2.4998 -3.5190 3.5353 8 8 1.9925 -4.5242 3.0757 9 7 3.1425 -3.5692 4.7189 10 6 3.2294 -4.8346 5.4521 11 1 2.4338 -5.5316 5.1893 12 6 4.6328 -5.4629 5.4322 13 6 4.4009 -5.8365 6.9057 14 1 3.9266 -6.8084 7.0418 15 6 5.6374 -5.6503 7.7872 16 7 6.4497 -6.8690 7.7528 17 6 7.7555 -6.9436 7.4204 18 6 8.1311 -8.2403 7.5129 19 6 7.0166 -8.9836 7.9150 20 7 6.0095 -8.1619 8.0643 21 6 3.4165 -4.6566 6.9681 22 6 2.9231 -1.0384 3.1738 23 8 2.6260 -0.1418 2.2281 24 1 -0.3933 0.4417 0.7650 25 1 1.7923 -0.5138 -0.8900 26 1 3.5345 1.7704 0.0321 27 1 1.5614 2.4680 -1.2085 28 1 1.2365 -2.7396 0.8967 29 1 3.5468 -2.7674 5.0857 30 1 4.7157 -6.3254 4.7709 31 1 5.4337 -4.7381 5.2863 32 1 6.2255 -4.8110 7.4157 33 1 5.3260 -5.4500 8.8124 34 1 8.3874 -6.1166 7.1320 35 1 9.1170 -8.6321 7.3109 36 1 6.9927 -10.0508 8.0789 37 1 3.8849 -3.7113 7.2422 38 1 2.5170 -4.8668 7.5467 39 1 3.4781 -0.8413 4.0791 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:35:38 Heat of formation + Delta-G solvation = 60.148494 kcal Electronic energy + Delta-G solvation = -23515.752506 eV Core-core repulsion = 19815.719633 eV Total energy + Delta-G solvation = -3700.032872 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.72678 -42.05900 -41.08714 -39.41274 -38.00798 -35.27646 -34.09781 -33.38374 -31.74173 -30.96784 -28.58218 -26.78963 -26.71543 -25.48787 -23.47861 -22.33472 -22.04235 -21.55400 -21.25735 -20.30330 -19.27669 -18.30384 -17.80720 -17.53363 -17.45859 -17.06863 -16.34431 -16.27661 -16.14032 -15.80042 -15.59604 -15.24402 -14.79463 -14.51442 -14.25403 -14.18101 -14.05071 -13.67220 -13.62749 -13.48901 -13.34123 -12.88843 -12.82940 -12.34065 -12.22194 -11.88159 -11.56164 -11.48225 -11.22730 -10.97946 -10.63103 -10.33186 -10.17201 -9.79600 -9.47268 -4.98023 0.25469 0.79707 1.01098 1.17729 1.51746 1.68177 1.80756 1.94404 1.95580 2.04910 2.20874 3.29712 3.36781 3.47762 3.48810 3.54524 3.58825 3.75215 3.91821 3.96644 4.09313 4.17328 4.26871 4.32548 4.41466 4.48879 4.52025 4.62053 4.66961 4.75985 4.80513 4.88722 4.91130 4.96007 5.02363 5.10166 5.15702 5.18904 5.50932 5.75262 5.82641 6.20843 6.46904 6.62538 6.78645 7.13767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.039 4.039 3 Si 0.803 3.197 4 C -0.051 4.051 5 C -0.156 4.156 6 C -0.272 4.272 7 C 0.585 3.415 8 O -0.592 6.592 9 N -0.695 5.695 10 C 0.117 3.883 11 H 0.083 0.917 12 C -0.141 4.141 13 C -0.116 4.116 14 H 0.078 0.922 15 C 0.140 3.860 16 N -0.375 5.375 17 C 0.055 3.945 18 C -0.296 4.296 19 C 0.027 3.973 20 N -0.339 5.339 21 C -0.113 4.113 22 C 0.072 3.928 23 O -0.162 6.162 24 H 0.400 0.600 25 H 0.128 0.872 26 H -0.287 1.287 27 H -0.286 1.286 28 H 0.139 0.861 29 H 0.420 0.580 30 H 0.041 0.959 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.208 0.792 35 H 0.159 0.841 36 H 0.193 0.807 37 H 0.128 0.872 38 H 0.082 0.918 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.411 9.244 5.438 11.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.148 4.148 3 Si 0.706 3.294 4 C -0.100 4.100 5 C -0.176 4.176 6 C -0.276 4.276 7 C 0.374 3.626 8 O -0.474 6.474 9 N -0.346 5.346 10 C 0.012 3.988 11 H 0.102 0.898 12 C -0.179 4.179 13 C -0.136 4.136 14 H 0.096 0.904 15 C 0.020 3.980 16 N -0.158 5.158 17 C -0.092 4.092 18 C -0.325 4.325 19 C -0.158 4.158 20 N -0.162 5.162 21 C -0.152 4.152 22 C 0.001 3.999 23 O -0.057 6.057 24 H 0.251 0.749 25 H 0.145 0.855 26 H -0.213 1.213 27 H -0.213 1.213 28 H 0.157 0.843 29 H 0.259 0.741 30 H 0.060 0.940 31 H 0.129 0.871 32 H 0.151 0.849 33 H 0.112 0.888 34 H 0.225 0.775 35 H 0.177 0.823 36 H 0.210 0.790 37 H 0.146 0.854 38 H 0.101 0.899 39 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 3.347 9.370 4.468 10.907 hybrid contribution 0.827 -1.565 -0.560 1.857 sum 4.174 7.804 3.908 9.675 Atomic orbital electron populations 1.86545 1.16315 1.82257 1.50364 1.24720 0.85305 1.12442 0.92338 0.93165 0.77746 0.73528 0.84938 1.22735 1.01396 0.92750 0.93078 1.22565 1.02488 0.96040 0.96511 1.21460 1.11636 0.95094 0.99435 1.17630 0.77076 0.86848 0.81037 1.90797 1.49424 1.37870 1.69310 1.45589 1.56177 1.12978 1.19897 1.22416 0.97676 0.85949 0.92743 0.89837 1.23561 0.97929 1.00553 0.95901 1.22522 0.96305 0.99835 0.94939 0.90398 1.22044 0.91504 0.82461 1.01983 1.48987 1.08506 1.06735 1.51535 1.23189 0.86098 1.00260 0.99607 1.21872 1.01617 0.93311 1.15683 1.24301 0.91231 1.00939 0.99337 1.77266 1.24842 0.89312 1.24772 1.23320 0.99579 0.99289 0.93001 1.25380 0.96500 0.84736 0.93271 1.83715 1.56806 1.38886 1.26294 0.74882 0.85481 1.21315 1.21324 0.84305 0.74120 0.93957 0.87102 0.84881 0.88750 0.77505 0.82297 0.78975 0.85353 0.89950 0.71588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.35 12.88 -148.98 -1.92 -1.57 16 2 C -0.04 0.06 2.97 71.24 0.21 0.27 16 3 Si 0.80 -3.36 32.09 68.60 2.20 -1.16 16 4 C -0.05 -0.01 6.18 24.76 0.15 0.14 16 5 C -0.16 -0.83 10.90 23.65 0.26 -0.57 16 6 C -0.27 -0.46 6.31 -19.00 -0.12 -0.58 16 7 C 0.58 3.30 7.81 86.65 0.68 3.97 16 8 O -0.59 -10.23 16.58 -4.08 -0.07 -10.30 16 9 N -0.69 2.79 5.35 -443.34 -2.37 0.42 16 10 C 0.12 -0.21 4.24 45.52 0.19 -0.01 16 11 H 0.08 0.49 7.46 -2.39 -0.02 0.47 16 12 C -0.14 0.37 7.43 31.12 0.23 0.60 16 13 C -0.12 0.45 3.87 -10.27 -0.04 0.41 16 14 H 0.08 0.24 7.97 -2.39 -0.02 0.22 16 15 C 0.14 -0.88 6.34 86.38 0.55 -0.33 16 16 N -0.38 -0.59 3.68 -348.07 -1.28 -1.87 16 17 C 0.06 -0.06 11.45 83.54 0.96 0.90 16 18 C -0.30 -0.59 10.80 21.99 0.24 -0.36 16 19 C 0.03 0.15 12.02 85.24 1.02 1.17 16 20 N -0.34 -2.81 12.28 -57.03 -0.70 -3.51 16 21 C -0.11 0.97 7.39 31.12 0.23 1.20 16 22 C 0.07 -0.54 11.61 67.39 0.78 0.24 16 23 O -0.16 0.65 8.90 4.47 0.04 0.69 16 24 H 0.40 -3.68 8.70 -74.06 -0.64 -4.33 16 25 H 0.13 -0.12 7.96 -2.39 -0.02 -0.14 16 26 H -0.29 -0.39 7.11 99.48 0.71 0.32 16 27 H -0.29 -0.64 7.11 99.48 0.71 0.07 16 28 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 29 H 0.42 -5.73 7.70 -92.71 -0.71 -6.44 16 30 H 0.04 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.11 -0.84 7.90 -2.39 -0.02 -0.86 16 32 H 0.13 -1.82 7.77 -2.38 -0.02 -1.84 16 33 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.21 -1.98 8.06 -2.91 -0.02 -2.01 16 35 H 0.16 -0.28 8.06 -2.91 -0.02 -0.30 16 36 H 0.19 0.15 8.06 -2.91 -0.02 0.12 16 37 H 0.13 -2.02 8.08 -2.39 -0.02 -2.04 16 38 H 0.08 -0.60 8.14 -2.38 -0.02 -0.62 16 39 H 0.27 -5.35 7.47 -2.91 -0.02 -5.37 16 Total: 0.00 -33.31 342.98 1.02 -32.29 By element: Atomic # 1 Polarization: -21.84 SS G_CDS: -0.23 Total: -22.07 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 5.34 Total: 7.07 kcal Atomic # 7 Polarization: -0.60 SS G_CDS: -4.35 Total: -4.95 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -1.95 Total: -11.18 kcal Atomic # 14 Polarization: -3.36 SS G_CDS: 2.20 Total: -1.16 kcal Total: -33.31 1.02 -32.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.438 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds