Wall clock time and date at job start Sun Mar 7 2021 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37871 * 126.45681 * 2 1 4 4 C 1.46680 * 126.23191 * 359.95210 * 3 2 1 5 5 O 1.21694 * 120.00024 * 359.72429 * 4 3 2 6 6 N 1.34775 * 120.00035 * 179.71488 * 4 3 2 7 7 C 1.46500 * 120.00400 * 180.02562 * 6 4 3 8 8 H 1.09004 * 112.84406 * 336.20132 * 7 6 4 9 9 C 1.53781 * 113.69047 * 107.46338 * 7 6 4 10 10 C 1.53787 * 87.07799 * 139.99669 * 9 7 6 11 11 H 1.08992 * 113.69024 * 89.13054 * 10 9 7 12 12 C 1.53000 * 113.61239 * 220.02294 * 10 9 7 13 13 N 1.46499 * 109.46840 * 272.49433 * 12 10 9 14 14 C 1.34950 * 126.03255 * 124.71851 * 13 12 10 15 15 C 1.35328 * 107.74401 * 179.84052 * 14 13 12 16 16 C 1.39866 * 107.91614 * 0.42360 * 15 14 13 17 17 N 1.30843 * 108.20566 * 359.73540 * 16 15 14 18 18 C 1.53776 * 113.61566 * 205.00567 * 7 6 4 19 19 N 1.37651 * 107.53158 * 179.69313 * 3 2 1 20 20 C 1.35531 * 108.64748 * 0.26426 * 19 3 2 21 21 C 1.50697 * 125.56658 * 180.02562 * 20 19 3 22 22 O 1.42901 * 109.47048 * 299.99686 * 21 20 19 23 23 Si 1.86295 * 109.47428 * 179.97438 * 21 20 19 24 24 C 1.35450 * 108.86858 * 359.97438 * 20 19 3 25 25 H 1.09004 * 109.46274 * 90.00616 * 1 2 3 26 26 H 1.09000 * 109.47269 * 210.00374 * 1 2 3 27 27 H 1.08996 * 109.47588 * 330.00843 * 1 2 3 28 28 H 0.97002 * 119.99626 * 0.02562 * 6 4 3 29 29 H 1.08998 * 113.61029 * 25.45404 * 9 7 6 30 30 H 1.08997 * 113.61702 * 254.54562 * 9 7 6 31 31 H 1.09002 * 109.47398 * 32.49759 * 12 10 9 32 32 H 1.09001 * 109.47194 * 152.49940 * 12 10 9 33 33 H 1.07997 * 126.13103 * 0.02562 * 14 13 12 34 34 H 1.07996 * 126.04194 * 180.16264 * 15 14 13 35 35 H 1.08002 * 125.89875 * 179.76187 * 16 15 14 36 36 H 1.08999 * 113.61671 * 105.38832 * 18 7 6 37 37 H 1.09001 * 113.69175 * 334.49288 * 18 7 6 38 38 H 0.97004 * 125.67207 * 180.23644 * 19 3 2 39 39 H 1.08997 * 109.47102 * 59.99299 * 21 20 19 40 40 H 0.96699 * 114.00240 * 300.00268 * 22 21 20 41 41 H 1.48500 * 110.00281 * 179.97438 * 23 21 20 42 42 H 1.48502 * 109.99943 * 301.32291 * 23 21 20 43 43 H 1.08000 * 126.06842 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8898 2.5093 -0.0010 5 8 0.7026 2.7766 -0.0070 6 7 2.8036 3.4999 0.0049 7 6 2.3677 4.8986 0.0045 8 1 1.3664 5.0297 -0.4058 9 6 2.5805 5.6125 1.3499 10 6 3.0167 6.8436 0.5380 11 1 2.1939 7.5074 0.2730 12 6 4.2082 7.5872 1.1448 13 7 3.7258 8.5733 2.1148 14 6 4.1023 8.6653 3.4075 15 6 3.4336 9.7046 3.9589 16 6 2.6134 10.2608 2.9719 17 7 2.7878 9.5835 1.8660 18 6 3.4066 5.8674 -0.5845 19 7 3.6284 0.6625 0.0070 20 6 3.6218 -0.6928 0.0054 21 6 4.8434 -1.5753 0.0120 22 8 5.6312 -1.3068 -1.1496 23 14 4.3183 -3.3627 0.0074 24 6 2.3380 -1.1247 -0.0020 25 1 -0.3632 -0.0001 -1.0278 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 3.7499 3.2868 0.0095 29 1 3.3802 5.1806 1.9515 30 1 1.6603 5.7649 1.9137 31 1 4.8640 6.8751 1.6459 32 1 4.7603 8.0953 0.3541 33 1 4.8125 8.0261 3.9109 34 1 3.5154 10.0420 4.9815 35 1 1.9509 11.1040 3.1002 36 1 3.1531 6.2257 -1.5823 37 1 4.4325 5.5063 -0.5124 38 1 4.4190 1.2244 0.0119 39 1 5.4333 -1.3725 0.9058 40 1 5.1688 -1.4658 -1.9839 41 1 5.5140 -4.2434 0.0132 42 1 3.4720 -3.6465 1.1942 43 1 2.0137 -2.1548 -0.0046 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_13940406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:35:42 Heat of formation + Delta-G solvation = 80.905289 kcal Electronic energy + Delta-G solvation = -25658.219930 eV Core-core repulsion = 21901.268183 eV Total energy + Delta-G solvation = -3756.951747 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.63224 -42.07534 -40.93979 -39.36341 -37.68830 -35.37076 -33.82705 -33.32169 -31.63340 -30.99228 -28.70636 -28.17621 -26.93204 -26.77898 -24.32892 -22.52264 -22.08082 -21.71426 -21.42308 -20.96995 -20.16820 -19.45053 -18.32534 -18.03200 -17.34577 -16.77731 -16.44649 -16.31030 -16.22702 -15.79427 -15.38979 -15.32558 -14.99171 -14.79208 -14.54816 -14.36092 -14.14715 -13.93745 -13.70478 -13.64173 -13.55682 -13.54991 -13.37677 -12.99101 -12.92431 -12.36743 -12.17539 -12.00126 -11.92410 -11.59507 -11.51399 -11.12642 -10.67197 -10.36487 -10.24617 -9.83542 -9.50141 -9.20936 -4.91161 0.27477 0.98147 1.22583 1.51049 1.64197 1.72122 1.90515 1.93449 2.00704 2.21133 2.21444 3.32145 3.43709 3.46725 3.48167 3.55633 3.68449 3.79038 3.88669 4.05934 4.10907 4.15191 4.22036 4.30466 4.41996 4.46975 4.56942 4.60027 4.69331 4.70414 4.75959 4.79872 4.86936 4.88538 4.91286 4.96769 5.10724 5.13870 5.15246 5.33042 5.44472 5.61661 5.73217 5.83183 6.16876 6.29525 6.46448 6.67099 6.76137 7.04371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.087 4.087 3 C -0.070 4.070 4 C 0.587 3.413 5 O -0.565 6.565 6 N -0.705 5.705 7 C 0.120 3.880 8 H 0.092 0.908 9 C -0.141 4.141 10 C -0.114 4.114 11 H 0.082 0.918 12 C 0.140 3.860 13 N -0.375 5.375 14 C 0.053 3.947 15 C -0.294 4.294 16 C 0.028 3.972 17 N -0.338 5.338 18 C -0.117 4.117 19 N -0.511 5.511 20 C 0.036 3.964 21 C -0.051 4.051 22 O -0.553 6.553 23 Si 0.799 3.201 24 C -0.209 4.209 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.411 0.589 29 H 0.104 0.896 30 H 0.047 0.953 31 H 0.129 0.871 32 H 0.094 0.906 33 H 0.206 0.794 34 H 0.160 0.840 35 H 0.195 0.805 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.428 0.572 39 H 0.118 0.882 40 H 0.399 0.601 41 H -0.294 1.294 42 H -0.286 1.286 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.443 -3.042 -0.930 7.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.184 4.184 4 C 0.376 3.624 5 O -0.444 6.444 6 N -0.356 5.356 7 C 0.016 3.984 8 H 0.110 0.890 9 C -0.179 4.179 10 C -0.134 4.134 11 H 0.101 0.899 12 C 0.020 3.980 13 N -0.158 5.158 14 C -0.093 4.093 15 C -0.323 4.323 16 C -0.157 4.157 17 N -0.160 5.160 18 C -0.156 4.156 19 N -0.109 5.109 20 C -0.083 4.083 21 C -0.161 4.161 22 O -0.361 6.361 23 Si 0.703 3.297 24 C -0.233 4.233 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.247 0.753 29 H 0.122 0.878 30 H 0.066 0.934 31 H 0.147 0.853 32 H 0.112 0.888 33 H 0.223 0.777 34 H 0.178 0.822 35 H 0.212 0.788 36 H 0.102 0.898 37 H 0.138 0.862 38 H 0.268 0.732 39 H 0.136 0.864 40 H 0.249 0.751 41 H -0.222 1.222 42 H -0.213 1.213 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.917 -3.512 -1.422 7.026 hybrid contribution 0.718 1.125 1.379 1.919 sum 6.635 -2.387 -0.043 7.052 Atomic orbital electron populations 1.20333 0.89350 1.02649 1.02452 1.20175 0.96254 0.91443 1.01670 1.20106 0.84564 0.92991 1.20705 1.17286 0.85684 0.83871 0.75598 1.90825 1.17827 1.83810 1.51966 1.45710 1.09545 1.05471 1.74898 1.22434 0.99731 0.78754 0.97525 0.88978 1.23540 1.01938 0.95645 0.96804 1.22523 0.98383 0.95037 0.97451 0.89948 1.22015 0.95721 0.88765 0.91497 1.48964 1.32600 1.24948 1.09287 1.23174 1.00925 1.00069 0.85162 1.21873 1.05668 1.02298 1.02469 1.24322 1.00189 1.00335 0.90830 1.77269 1.10831 1.03038 1.24896 1.23318 1.00214 0.93558 0.98478 1.41771 1.06702 1.06701 1.55707 1.21288 0.96994 0.83406 1.06630 1.25001 0.90579 1.08763 0.91800 1.86471 1.41893 1.91264 1.16476 0.92974 0.78938 0.70755 0.86994 1.20826 0.90895 0.99477 1.12089 0.91118 0.90353 0.92395 0.75277 0.87779 0.93425 0.85333 0.88803 0.77731 0.82224 0.78808 0.89776 0.86172 0.73180 0.86445 0.75053 1.22176 1.21295 0.81680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 9.83 71.24 0.70 0.25 16 2 C -0.09 -0.38 6.21 -19.56 -0.12 -0.51 16 3 C -0.07 -0.22 7.06 40.35 0.28 0.07 16 4 C 0.59 3.30 7.79 86.45 0.67 3.97 16 5 O -0.57 -7.98 14.40 -4.33 -0.06 -8.04 16 6 N -0.71 1.62 5.35 -444.00 -2.38 -0.75 16 7 C 0.12 -0.15 4.24 45.52 0.19 0.05 16 8 H 0.09 0.46 7.46 -2.38 -0.02 0.44 16 9 C -0.14 0.27 7.43 31.12 0.23 0.50 16 10 C -0.11 0.36 3.87 -10.26 -0.04 0.32 16 11 H 0.08 0.26 7.96 -2.39 -0.02 0.24 16 12 C 0.14 -0.71 6.35 86.38 0.55 -0.16 16 13 N -0.38 -0.83 3.68 -348.05 -1.28 -2.11 16 14 C 0.05 -0.02 11.45 83.54 0.96 0.94 16 15 C -0.29 -0.68 10.80 21.99 0.24 -0.44 16 16 C 0.03 0.15 12.03 85.23 1.02 1.18 16 17 N -0.34 -2.86 12.27 -57.02 -0.70 -3.55 16 18 C -0.12 0.84 7.39 31.12 0.23 1.07 16 19 N -0.51 1.68 5.99 -171.94 -1.03 0.65 16 20 C 0.04 -0.10 6.47 41.34 0.27 0.16 16 21 C -0.05 0.28 3.08 71.23 0.22 0.50 16 22 O -0.55 3.11 12.88 -148.98 -1.92 1.20 16 23 Si 0.80 -4.45 30.54 68.60 2.10 -2.35 16 24 C -0.21 0.07 9.27 22.01 0.20 0.28 16 25 H 0.07 0.30 8.14 -2.38 -0.02 0.28 16 26 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 27 H 0.06 0.56 6.49 -2.39 -0.02 0.55 16 28 H 0.41 -3.83 7.86 -92.71 -0.73 -4.56 16 29 H 0.10 -0.61 7.90 -2.39 -0.02 -0.63 16 30 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.13 -1.52 7.77 -2.39 -0.02 -1.54 16 32 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.21 -1.74 8.06 -2.91 -0.02 -1.77 16 34 H 0.16 -0.24 8.06 -2.91 -0.02 -0.27 16 35 H 0.20 0.12 8.06 -2.91 -0.02 0.10 16 36 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 37 H 0.12 -1.56 8.08 -2.39 -0.02 -1.58 16 38 H 0.43 -3.83 8.19 -92.71 -0.76 -4.59 16 39 H 0.12 -0.67 7.96 -2.39 -0.02 -0.68 16 40 H 0.40 -5.00 8.70 -74.06 -0.64 -5.64 16 41 H -0.29 -0.43 7.11 99.48 0.71 0.28 16 42 H -0.29 -0.06 7.11 99.48 0.71 0.65 16 43 H 0.17 -0.73 6.17 -2.91 -0.02 -0.74 16 Total: 0.00 -26.41 362.00 -0.70 -27.11 By element: Atomic # 1 Polarization: -19.28 SS G_CDS: -1.03 Total: -20.32 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 5.61 Total: 8.18 kcal Atomic # 7 Polarization: -0.39 SS G_CDS: -5.39 Total: -5.77 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -1.98 Total: -6.85 kcal Atomic # 14 Polarization: -4.45 SS G_CDS: 2.10 Total: -2.35 kcal Total: -26.41 -0.70 -27.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13940406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.011 kcal (2) G-P(sol) polarization free energy of solvation -26.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds