Wall clock time and date at job start Sun Mar 7 2021 02:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50702 * 109.47242 * 120.00115 * 2 1 3 5 5 C 1.34850 * 125.88961 * 245.02400 * 4 2 1 6 6 C 1.40893 * 107.41607 * 179.97438 * 5 4 2 7 7 C 1.34851 * 107.41688 * 0.02562 * 6 5 4 8 8 C 1.50700 * 125.88856 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46901 * 84.98103 * 8 7 6 10 10 O 1.21284 * 119.99950 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99832 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99797 * 179.97438 * 11 9 8 13 13 H 1.09006 * 112.84813 * 336.19703 * 12 11 9 14 14 C 1.53778 * 113.61681 * 107.49959 * 12 11 9 15 15 C 1.53777 * 87.08414 * 139.98196 * 14 12 11 16 16 H 1.09000 * 113.69113 * 89.12816 * 15 14 12 17 17 C 1.53000 * 113.61501 * 220.02313 * 15 14 12 18 18 N 1.46497 * 109.46752 * 272.49391 * 17 15 14 19 19 C 1.34955 * 126.03402 * 124.71927 * 18 17 15 20 20 C 1.35319 * 107.74244 * 179.83795 * 19 18 17 21 21 C 1.39865 * 107.92216 * 0.42263 * 20 19 18 22 22 N 1.30841 * 108.20483 * 359.73620 * 21 20 19 23 23 C 1.53778 * 113.61578 * 205.00032 * 12 11 9 24 24 N 1.36342 * 125.89041 * 64.71339 * 4 2 1 25 25 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 26 26 H 1.09000 * 109.47224 * 239.99764 * 2 1 3 27 27 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 28 28 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 29 29 H 1.07999 * 126.29153 * 0.02562 * 5 4 2 30 30 H 1.08002 * 126.29033 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.46981 * 204.97791 * 8 7 6 32 32 H 1.08999 * 109.47863 * 324.98005 * 8 7 6 33 33 H 0.96988 * 120.00221 * 359.97438 * 11 9 8 34 34 H 1.09004 * 113.61662 * 254.53238 * 14 12 11 35 35 H 1.09005 * 113.61240 * 25.43144 * 14 12 11 36 36 H 1.08997 * 109.46866 * 32.49566 * 17 15 14 37 37 H 1.08997 * 109.47179 * 152.49678 * 17 15 14 38 38 H 1.08002 * 126.12603 * 359.97438 * 19 18 17 39 39 H 1.08007 * 126.03776 * 180.15937 * 20 19 18 40 40 H 1.08005 * 125.89792 * 179.71988 * 21 20 19 41 41 H 1.09001 * 113.61376 * 334.56332 * 23 12 11 42 42 H 1.08999 * 113.61666 * 105.38645 * 23 12 11 43 43 H 0.96997 * 125.63709 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6297 -0.1486 2.2379 6 6 2.8970 -1.1603 3.1813 7 6 2.3521 -2.3020 2.7142 8 6 2.3922 -3.6443 3.3979 9 6 1.2597 -3.7378 4.3878 10 8 0.4957 -2.8059 4.5249 11 7 1.0966 -4.8566 5.1214 12 6 -0.0039 -4.9473 6.0841 13 1 -0.3525 -3.9712 6.4217 14 6 -1.1363 -5.8875 5.6386 15 6 -1.2120 -6.3608 7.0997 16 1 -1.8920 -5.7727 7.7160 17 6 -1.4315 -7.8680 7.2451 18 7 -2.8676 -8.1564 7.2252 19 6 -3.4945 -9.0094 6.3881 20 6 -4.8125 -8.9939 6.6945 21 6 -4.9987 -8.0937 7.7487 22 7 -3.8336 -7.5911 8.0677 23 6 0.2606 -5.9373 7.2308 24 7 1.7529 -2.0308 1.5199 25 1 -0.3934 0.4417 -0.7651 26 1 1.7923 -0.5139 -0.8900 27 1 1.5879 2.4585 -1.2243 28 1 1.5615 2.4679 1.2085 29 1 2.9285 0.8868 2.3090 30 1 3.4393 -1.0432 4.1080 31 1 2.2904 -4.4343 2.6537 32 1 3.3419 -3.7578 3.9206 33 1 1.7078 -5.6017 5.0120 34 1 -2.0314 -5.3642 5.3022 35 1 -0.8122 -6.6630 4.9445 36 1 -0.9450 -8.3873 6.4194 37 1 -1.0058 -8.2078 8.1893 38 1 -3.0276 -9.6003 5.6140 39 1 -5.5848 -9.5712 6.2080 40 1 -5.9416 -7.8546 8.2181 41 1 0.9665 -6.7265 6.9721 42 1 0.4946 -5.4543 8.1794 43 1 1.2803 -2.6719 0.9663 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688084_14644196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:35:46 Heat of formation + Delta-G solvation = 88.271588 kcal Electronic energy + Delta-G solvation = -25238.176939 eV Core-core repulsion = 21481.544619 eV Total energy + Delta-G solvation = -3756.632320 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.24310 -42.04977 -41.02551 -39.40047 -37.76018 -35.12057 -33.71124 -32.90319 -31.81507 -30.96684 -29.61800 -28.38297 -26.89773 -25.33106 -23.98932 -22.06086 -21.95930 -21.49741 -21.21683 -21.01574 -20.47061 -18.55680 -18.42717 -18.11230 -18.02248 -17.16740 -16.43887 -16.38947 -15.98722 -15.91129 -15.31966 -15.03897 -14.91777 -14.64991 -14.49106 -14.34522 -14.20599 -13.89704 -13.74142 -13.68594 -13.58346 -13.39797 -13.25304 -13.07097 -12.78660 -12.39916 -12.34669 -11.96014 -11.80213 -11.58935 -11.48722 -10.83657 -10.56839 -10.28696 -10.07603 -9.65646 -9.46175 -8.84371 -4.87917 1.01640 1.13248 1.33916 1.57397 1.64028 1.65988 1.93606 2.00765 2.05807 2.31312 2.53294 3.25955 3.35016 3.37763 3.41077 3.62207 3.65873 3.83216 3.93545 3.93984 3.96120 4.03528 4.05812 4.24405 4.26734 4.35054 4.36545 4.44740 4.58241 4.62324 4.64970 4.76863 4.85087 4.88613 4.89089 4.92060 5.14861 5.17075 5.36570 5.42952 5.47477 5.78202 6.10768 6.12104 6.25293 6.40965 6.43745 6.71085 6.83025 7.23314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.056 4.056 3 Si 0.711 3.289 4 C 0.036 3.964 5 C -0.183 4.183 6 C -0.172 4.172 7 C 0.035 3.965 8 C -0.071 4.071 9 C 0.510 3.490 10 O -0.519 6.519 11 N -0.724 5.724 12 C 0.126 3.874 13 H 0.117 0.883 14 C -0.147 4.147 15 C -0.120 4.120 16 H 0.110 0.890 17 C 0.146 3.854 18 N -0.371 5.371 19 C 0.051 3.949 20 C -0.275 4.275 21 C 0.044 3.956 22 N -0.295 5.295 23 C -0.137 4.137 24 N -0.536 5.536 25 H 0.380 0.620 26 H 0.071 0.929 27 H -0.262 1.262 28 H -0.252 1.252 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.401 0.599 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.172 0.828 39 H 0.147 0.853 40 H 0.183 0.817 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.598 -5.421 -3.209 8.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.165 4.165 3 Si 0.611 3.389 4 C -0.077 4.077 5 C -0.208 4.208 6 C -0.196 4.196 7 C -0.078 4.078 8 C -0.112 4.112 9 C 0.296 3.704 10 O -0.394 6.394 11 N -0.376 5.376 12 C 0.021 3.979 13 H 0.135 0.865 14 C -0.186 4.186 15 C -0.140 4.140 16 H 0.128 0.872 17 C 0.025 3.975 18 N -0.153 5.153 19 C -0.095 4.095 20 C -0.304 4.304 21 C -0.142 4.142 22 N -0.116 5.116 23 C -0.175 4.175 24 N -0.131 5.131 25 H 0.228 0.772 26 H 0.089 0.911 27 H -0.187 1.187 28 H -0.176 1.176 29 H 0.159 0.841 30 H 0.155 0.845 31 H 0.117 0.883 32 H 0.136 0.864 33 H 0.235 0.765 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.189 0.811 39 H 0.165 0.835 40 H 0.200 0.800 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 5.631 -3.467 -1.880 6.875 hybrid contribution -1.636 -1.656 -1.419 2.726 sum 3.995 -5.123 -3.299 7.287 Atomic orbital electron populations 1.86632 1.18055 1.80297 1.49826 1.24503 0.84298 1.11499 0.96179 0.94498 0.91439 0.72784 0.80209 1.19554 1.05697 0.83881 0.98548 1.20616 1.05941 0.99532 0.94736 1.20570 1.06797 0.91541 1.00737 1.19448 1.03750 0.95910 0.88712 1.20135 0.99203 0.94397 0.97453 1.20686 0.86013 0.82230 0.81500 1.90793 1.45058 1.37218 1.66283 1.45976 1.32228 1.18073 1.41312 1.22431 0.87007 0.99524 0.88926 0.86513 1.23558 0.99589 0.99431 0.95973 1.22708 0.97901 0.95014 0.98376 0.87219 1.21732 0.75684 0.96337 1.03788 1.48712 1.07285 1.32956 1.26384 1.22577 0.93916 0.96168 0.96822 1.21558 0.96079 1.08280 1.04507 1.23937 0.96832 0.96277 0.97153 1.77347 0.97333 1.21289 1.15660 1.23368 0.95834 0.98869 0.99477 1.41754 1.43751 1.09316 1.18265 0.77189 0.91109 1.18742 1.17606 0.84070 0.84461 0.88266 0.86379 0.76475 0.90897 0.89674 0.88591 0.89418 0.81123 0.83545 0.80030 0.89129 0.89891 0.75245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.36 12.86 -35.23 -0.45 -1.81 16 2 C -0.06 -0.06 3.07 36.01 0.11 0.05 16 3 Si 0.71 -0.04 30.60 -169.99 -5.20 -5.25 16 4 C 0.04 0.11 6.53 -81.79 -0.53 -0.43 16 5 C -0.18 -0.59 9.37 -39.78 -0.37 -0.96 16 6 C -0.17 -0.53 10.76 -39.78 -0.43 -0.95 16 7 C 0.04 0.07 5.66 -81.79 -0.46 -0.39 16 8 C -0.07 0.11 6.24 -29.03 -0.18 -0.07 16 9 C 0.51 0.62 7.82 -10.98 -0.09 0.53 16 10 O -0.52 -3.44 15.63 5.55 0.09 -3.36 16 11 N -0.72 1.33 5.35 -53.01 -0.28 1.05 16 12 C 0.13 -0.10 4.24 -67.12 -0.28 -0.39 16 13 H 0.12 0.22 7.46 -51.93 -0.39 -0.16 16 14 C -0.15 0.14 7.43 -25.92 -0.19 -0.05 16 15 C -0.12 0.17 3.87 -89.81 -0.35 -0.18 16 16 H 0.11 0.10 7.96 -51.93 -0.41 -0.31 16 17 C 0.15 -0.27 6.35 -4.04 -0.03 -0.29 16 18 N -0.37 -0.50 3.68 -61.37 -0.23 -0.72 16 19 C 0.05 0.02 11.45 -17.22 -0.20 -0.18 16 20 C -0.27 -0.33 10.80 -40.01 -0.43 -0.77 16 21 C 0.04 0.10 12.03 -17.37 -0.21 -0.11 16 22 N -0.29 -1.12 12.27 30.63 0.38 -0.75 16 23 C -0.14 0.41 7.39 -25.92 -0.19 0.22 16 24 N -0.54 -1.16 6.07 -5.44 -0.03 -1.20 16 25 H 0.38 -0.69 8.74 45.56 0.40 -0.29 16 26 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 27 H -0.26 -0.38 7.11 56.52 0.40 0.02 16 28 H -0.25 -0.91 7.11 56.52 0.40 -0.50 16 29 H 0.14 0.22 6.24 -52.49 -0.33 -0.11 16 30 H 0.14 0.22 8.06 -52.49 -0.42 -0.20 16 31 H 0.10 -0.40 8.14 -51.93 -0.42 -0.83 16 32 H 0.12 -0.47 8.14 -51.93 -0.42 -0.90 16 33 H 0.40 -2.06 8.73 -40.82 -0.36 -2.41 16 34 H 0.07 0.11 8.14 -51.93 -0.42 -0.32 16 35 H 0.08 -0.19 7.90 -51.93 -0.41 -0.60 16 36 H 0.10 -0.42 7.77 -51.93 -0.40 -0.82 16 37 H 0.09 -0.19 8.14 -51.93 -0.42 -0.62 16 38 H 0.17 -0.51 8.06 -52.49 -0.42 -0.94 16 39 H 0.15 -0.09 8.06 -52.48 -0.42 -0.51 16 40 H 0.18 -0.05 8.06 -52.48 -0.42 -0.47 16 41 H 0.09 -0.45 8.08 -51.93 -0.42 -0.87 16 42 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 43 H 0.41 0.11 8.96 -40.82 -0.37 -0.26 16 LS Contribution 366.43 15.07 5.52 5.52 Total: 0.00 -12.54 366.43 -10.15 -22.69 By element: Atomic # 1 Polarization: -6.12 SS G_CDS: -6.10 Total: -12.23 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -3.83 Total: -3.95 kcal Atomic # 7 Polarization: -1.45 SS G_CDS: -0.17 Total: -1.62 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.37 Total: -5.17 kcal Atomic # 14 Polarization: -0.04 SS G_CDS: -5.20 Total: -5.25 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -12.54 -10.15 -22.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_14644196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.960 kcal (2) G-P(sol) polarization free energy of solvation -12.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds