Wall clock time and date at job start Sun Mar 7 2021 02:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50702 * 109.47242 * 120.00115 * 2 1 3 5 5 C 1.34850 * 125.88961 * 245.02400 * 4 2 1 6 6 C 1.40893 * 107.41607 * 179.97438 * 5 4 2 7 7 C 1.34851 * 107.41688 * 0.02562 * 6 5 4 8 8 C 1.50700 * 125.88856 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46901 * 84.98103 * 8 7 6 10 10 O 1.21284 * 119.99950 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99832 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99797 * 179.97438 * 11 9 8 13 13 H 1.09006 * 112.84813 * 336.19703 * 12 11 9 14 14 C 1.53778 * 113.61681 * 107.49959 * 12 11 9 15 15 C 1.53777 * 87.08414 * 139.98196 * 14 12 11 16 16 H 1.09000 * 113.69113 * 89.12816 * 15 14 12 17 17 C 1.53000 * 113.61501 * 220.02313 * 15 14 12 18 18 N 1.46497 * 109.46752 * 272.49391 * 17 15 14 19 19 C 1.34955 * 126.03402 * 124.71927 * 18 17 15 20 20 C 1.35319 * 107.74244 * 179.83795 * 19 18 17 21 21 C 1.39865 * 107.92216 * 0.42263 * 20 19 18 22 22 N 1.30841 * 108.20483 * 359.73620 * 21 20 19 23 23 C 1.53778 * 113.61578 * 205.00032 * 12 11 9 24 24 N 1.36342 * 125.89041 * 64.71339 * 4 2 1 25 25 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 26 26 H 1.09000 * 109.47224 * 239.99764 * 2 1 3 27 27 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 28 28 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 29 29 H 1.07999 * 126.29153 * 0.02562 * 5 4 2 30 30 H 1.08002 * 126.29033 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.46981 * 204.97791 * 8 7 6 32 32 H 1.08999 * 109.47863 * 324.98005 * 8 7 6 33 33 H 0.96988 * 120.00221 * 359.97438 * 11 9 8 34 34 H 1.09004 * 113.61662 * 254.53238 * 14 12 11 35 35 H 1.09005 * 113.61240 * 25.43144 * 14 12 11 36 36 H 1.08997 * 109.46866 * 32.49566 * 17 15 14 37 37 H 1.08997 * 109.47179 * 152.49678 * 17 15 14 38 38 H 1.08002 * 126.12603 * 359.97438 * 19 18 17 39 39 H 1.08007 * 126.03776 * 180.15937 * 20 19 18 40 40 H 1.08005 * 125.89792 * 179.71988 * 21 20 19 41 41 H 1.09001 * 113.61376 * 334.56332 * 23 12 11 42 42 H 1.08999 * 113.61666 * 105.38645 * 23 12 11 43 43 H 0.96997 * 125.63709 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6297 -0.1486 2.2379 6 6 2.8970 -1.1603 3.1813 7 6 2.3521 -2.3020 2.7142 8 6 2.3922 -3.6443 3.3979 9 6 1.2597 -3.7378 4.3878 10 8 0.4957 -2.8059 4.5249 11 7 1.0966 -4.8566 5.1214 12 6 -0.0039 -4.9473 6.0841 13 1 -0.3525 -3.9712 6.4217 14 6 -1.1363 -5.8875 5.6386 15 6 -1.2120 -6.3608 7.0997 16 1 -1.8920 -5.7727 7.7160 17 6 -1.4315 -7.8680 7.2451 18 7 -2.8676 -8.1564 7.2252 19 6 -3.4945 -9.0094 6.3881 20 6 -4.8125 -8.9939 6.6945 21 6 -4.9987 -8.0937 7.7487 22 7 -3.8336 -7.5911 8.0677 23 6 0.2606 -5.9373 7.2308 24 7 1.7529 -2.0308 1.5199 25 1 -0.3934 0.4417 -0.7651 26 1 1.7923 -0.5139 -0.8900 27 1 1.5879 2.4585 -1.2243 28 1 1.5615 2.4679 1.2085 29 1 2.9285 0.8868 2.3090 30 1 3.4393 -1.0432 4.1080 31 1 2.2904 -4.4343 2.6537 32 1 3.3419 -3.7578 3.9206 33 1 1.7078 -5.6017 5.0120 34 1 -2.0314 -5.3642 5.3022 35 1 -0.8122 -6.6630 4.9445 36 1 -0.9450 -8.3873 6.4194 37 1 -1.0058 -8.2078 8.1893 38 1 -3.0276 -9.6003 5.6140 39 1 -5.5848 -9.5712 6.2080 40 1 -5.9416 -7.8546 8.2181 41 1 0.9665 -6.7265 6.9721 42 1 0.4946 -5.4543 8.1794 43 1 1.2803 -2.6719 0.9663 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_14644196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:35:45 Heat of formation + Delta-G solvation = 83.439255 kcal Electronic energy + Delta-G solvation = -25238.386485 eV Core-core repulsion = 21481.544619 eV Total energy + Delta-G solvation = -3756.841866 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.33789 -42.06951 -41.03998 -39.44491 -37.87323 -35.14663 -33.73281 -32.90976 -31.95623 -31.00501 -29.65525 -28.34235 -26.77371 -25.38932 -23.98301 -22.08665 -22.00137 -21.50324 -21.35893 -21.09977 -20.41567 -18.65697 -18.42716 -18.12785 -18.05904 -17.12907 -16.44599 -16.35240 -16.01082 -15.99305 -15.36448 -15.11995 -14.97189 -14.68184 -14.55728 -14.39377 -14.22556 -14.02823 -13.68786 -13.60136 -13.49937 -13.38824 -13.31137 -13.03280 -12.80136 -12.45039 -12.31777 -11.97802 -11.88522 -11.57608 -11.48546 -10.97823 -10.63305 -10.34923 -10.07305 -9.81637 -9.49296 -8.97153 -4.90378 0.98915 1.03304 1.28129 1.58689 1.60302 1.66764 1.83395 1.93681 1.98302 2.30876 2.49388 3.37029 3.37682 3.47931 3.51521 3.66789 3.74164 3.90028 3.90510 4.02543 4.07368 4.19178 4.22045 4.27710 4.32967 4.47010 4.49473 4.59389 4.63365 4.65478 4.74692 4.78849 4.79611 4.89097 4.94858 5.01424 5.14060 5.21669 5.23241 5.28969 5.55164 5.73328 5.98649 6.10976 6.18710 6.50342 6.54722 6.67592 6.76699 7.27807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.064 4.064 3 Si 0.793 3.207 4 C 0.017 3.983 5 C -0.205 4.205 6 C -0.201 4.201 7 C 0.034 3.966 8 C -0.064 4.064 9 C 0.507 3.493 10 O -0.585 6.585 11 N -0.703 5.703 12 C 0.118 3.882 13 H 0.079 0.921 14 C -0.140 4.140 15 C -0.117 4.117 16 H 0.076 0.924 17 C 0.140 3.860 18 N -0.375 5.375 19 C 0.055 3.945 20 C -0.295 4.295 21 C 0.027 3.973 22 N -0.340 5.340 23 C -0.115 4.115 24 N -0.537 5.537 25 H 0.396 0.604 26 H 0.098 0.902 27 H -0.277 1.277 28 H -0.309 1.309 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.133 0.867 32 H 0.149 0.851 33 H 0.422 0.578 34 H 0.038 0.962 35 H 0.110 0.890 36 H 0.133 0.867 37 H 0.094 0.906 38 H 0.208 0.792 39 H 0.160 0.840 40 H 0.194 0.806 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 -8.089 -4.468 11.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.377 6.377 2 C -0.173 4.173 3 Si 0.697 3.303 4 C -0.096 4.096 5 C -0.230 4.230 6 C -0.225 4.225 7 C -0.080 4.080 8 C -0.104 4.104 9 C 0.295 3.705 10 O -0.464 6.464 11 N -0.356 5.356 12 C 0.012 3.988 13 H 0.097 0.903 14 C -0.178 4.178 15 C -0.137 4.137 16 H 0.094 0.906 17 C 0.020 3.980 18 N -0.158 5.158 19 C -0.092 4.092 20 C -0.324 4.324 21 C -0.158 4.158 22 N -0.163 5.163 23 C -0.153 4.153 24 N -0.133 5.133 25 H 0.247 0.753 26 H 0.116 0.884 27 H -0.204 1.204 28 H -0.237 1.237 29 H 0.164 0.836 30 H 0.161 0.839 31 H 0.151 0.849 32 H 0.167 0.833 33 H 0.261 0.739 34 H 0.057 0.943 35 H 0.128 0.872 36 H 0.151 0.849 37 H 0.112 0.888 38 H 0.225 0.775 39 H 0.178 0.822 40 H 0.211 0.789 41 H 0.144 0.856 42 H 0.098 0.902 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 7.528 -6.198 -3.158 10.250 hybrid contribution -2.262 -0.807 -0.988 2.597 sum 5.266 -7.006 -4.145 9.695 Atomic orbital electron populations 1.86581 1.19012 1.80857 1.51265 1.24728 0.83692 1.12313 0.96522 0.93566 0.90113 0.70498 0.76109 1.19888 1.05940 0.84486 0.99273 1.20879 1.06701 1.00083 0.95369 1.20848 1.08083 0.92306 1.01290 1.19970 1.02397 0.97209 0.88455 1.20278 0.99235 0.93446 0.97475 1.21208 0.85845 0.81863 0.81616 1.90779 1.47590 1.39613 1.68410 1.45796 1.31860 1.17961 1.39955 1.22300 0.87759 0.98369 0.90329 0.90306 1.23538 0.98038 0.99580 0.96687 1.22532 0.98470 0.95339 0.97371 0.90597 1.22036 0.74422 0.95840 1.05656 1.48986 1.08049 1.32749 1.25984 1.23198 0.93776 0.95472 0.96731 1.21875 0.97243 1.08650 1.04650 1.24311 0.97135 0.96577 0.97788 1.77273 0.98433 1.22985 1.17589 1.23305 0.95231 0.98594 0.98195 1.41857 1.43581 1.09284 1.18542 0.75290 0.88419 1.20367 1.23709 0.83633 0.83908 0.84890 0.83311 0.73935 0.94257 0.87156 0.84938 0.88831 0.77484 0.82213 0.78946 0.85560 0.90231 0.74351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -3.17 12.86 -148.98 -1.92 -5.09 16 2 C -0.06 -0.14 3.07 71.24 0.22 0.08 16 3 Si 0.79 0.49 30.60 68.60 2.10 2.59 16 4 C 0.02 0.12 6.53 41.08 0.27 0.39 16 5 C -0.21 -1.64 9.37 22.14 0.21 -1.43 16 6 C -0.20 -1.45 10.76 22.14 0.24 -1.21 16 7 C 0.03 0.13 5.66 41.08 0.23 0.37 16 8 C -0.06 0.31 6.24 29.10 0.18 0.49 16 9 C 0.51 1.15 7.82 87.66 0.69 1.84 16 10 O -0.58 -8.95 15.63 -3.04 -0.05 -9.00 16 11 N -0.70 3.45 5.35 -440.03 -2.36 1.09 16 12 C 0.12 -0.14 4.24 45.52 0.19 0.05 16 13 H 0.08 0.55 7.46 -2.38 -0.02 0.53 16 14 C -0.14 0.25 7.43 31.12 0.23 0.48 16 15 C -0.12 0.32 3.87 -10.27 -0.04 0.28 16 16 H 0.08 0.34 7.96 -2.39 -0.02 0.32 16 17 C 0.14 -0.73 6.35 86.38 0.55 -0.18 16 18 N -0.38 -0.89 3.68 -348.07 -1.28 -2.17 16 19 C 0.05 -0.03 11.45 83.54 0.96 0.93 16 20 C -0.29 -0.73 10.80 21.99 0.24 -0.49 16 21 C 0.03 0.16 12.03 85.23 1.02 1.19 16 22 N -0.34 -3.08 12.27 -57.02 -0.70 -3.78 16 23 C -0.11 0.83 7.39 31.12 0.23 1.06 16 24 N -0.54 -2.43 6.07 -171.12 -1.04 -3.47 16 25 H 0.40 -1.34 8.74 -74.06 -0.65 -1.99 16 26 H 0.10 -0.33 7.96 -2.39 -0.02 -0.35 16 27 H -0.28 -0.82 7.11 99.48 0.71 -0.11 16 28 H -0.31 -3.10 7.11 99.48 0.71 -2.39 16 29 H 0.15 0.77 6.24 -2.91 -0.02 0.75 16 30 H 0.14 0.65 8.06 -2.91 -0.02 0.63 16 31 H 0.13 -1.52 8.14 -2.39 -0.02 -1.54 16 32 H 0.15 -1.61 8.14 -2.39 -0.02 -1.63 16 33 H 0.42 -5.70 8.73 -92.72 -0.81 -6.51 16 34 H 0.04 0.21 8.14 -2.38 -0.02 0.19 16 35 H 0.11 -0.76 7.90 -2.38 -0.02 -0.78 16 36 H 0.13 -1.66 7.77 -2.39 -0.02 -1.68 16 37 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 38 H 0.21 -1.88 8.06 -2.91 -0.02 -1.90 16 39 H 0.16 -0.23 8.06 -2.91 -0.02 -0.25 16 40 H 0.19 0.25 8.06 -2.91 -0.02 0.22 16 41 H 0.13 -1.77 8.08 -2.39 -0.02 -1.79 16 42 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 43 H 0.42 0.12 8.96 -92.71 -0.83 -0.71 16 Total: 0.00 -35.00 366.43 -1.02 -36.02 By element: Atomic # 1 Polarization: -18.84 SS G_CDS: -1.20 Total: -20.04 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 5.41 Total: 3.84 kcal Atomic # 7 Polarization: -2.96 SS G_CDS: -5.38 Total: -8.33 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -1.96 Total: -14.08 kcal Atomic # 14 Polarization: 0.49 SS G_CDS: 2.10 Total: 2.59 kcal Total: -35.00 -1.02 -36.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_14644196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.462 kcal (2) G-P(sol) polarization free energy of solvation -35.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds