Wall clock time and date at job start Sun Mar 7 2021 02:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47039 * 2 1 4 4 C 1.50699 * 109.47144 * 119.99426 * 2 1 3 5 5 C 1.31113 * 118.54742 * 249.98417 * 4 2 1 6 6 N 1.38971 * 121.86619 * 179.68400 * 5 4 2 7 7 C 1.47020 * 118.86205 * 13.17853 * 6 5 4 8 8 C 1.50701 * 109.82608 * 196.87757 * 7 6 5 9 9 O 1.21282 * 119.99329 * 19.13327 * 8 7 6 10 10 N 1.34775 * 120.00089 * 199.13981 * 8 7 6 11 11 C 1.46507 * 119.99718 * 179.97438 * 10 8 7 12 12 H 1.08998 * 112.84650 * 336.19016 * 11 10 8 13 13 C 1.53958 * 113.66388 * 107.43436 * 11 10 8 14 14 C 1.53784 * 87.01508 * 139.93325 * 13 11 10 15 15 H 1.08997 * 113.62089 * 89.22776 * 14 13 11 16 16 C 1.52999 * 113.61473 * 220.05031 * 14 13 11 17 17 N 1.46501 * 109.46864 * 274.13463 * 16 14 13 18 18 C 1.34953 * 126.03725 * 125.00110 * 17 16 14 19 19 C 1.35312 * 107.74266 * 180.20624 * 18 17 16 20 20 C 1.39863 * 107.92527 * 359.64076 * 19 18 17 21 21 N 1.30837 * 108.19940 * 0.36269 * 20 19 18 22 22 C 1.53773 * 113.61045 * 204.99405 * 11 10 8 23 23 C 1.53550 * 107.70982 * 316.44831 * 7 6 5 24 24 C 1.50205 * 118.54370 * 69.99942 * 4 2 1 25 25 H 0.96704 * 113.99682 * 60.00814 * 1 2 3 26 26 H 1.09000 * 109.47771 * 239.99789 * 2 1 3 27 27 H 1.48505 * 109.99916 * 298.67587 * 3 2 1 28 28 H 1.48498 * 110.00421 * 59.99608 * 3 2 1 29 29 H 1.08002 * 119.07802 * 359.59087 * 5 4 2 30 30 H 0.97006 * 120.57917 * 193.28011 * 6 5 4 31 31 H 1.09002 * 109.82624 * 76.01602 * 7 6 5 32 32 H 0.96995 * 120.00418 * 359.97438 * 10 8 7 33 33 H 1.08991 * 113.61449 * 25.41643 * 13 11 10 34 34 H 1.08990 * 113.66478 * 254.45288 * 13 11 10 35 35 H 1.08998 * 109.47551 * 154.13826 * 16 14 13 36 36 H 1.09002 * 109.47429 * 34.13320 * 16 14 13 37 37 H 1.08002 * 126.12372 * 359.93597 * 18 17 16 38 38 H 1.08008 * 126.03698 * 179.76435 * 19 18 17 39 39 H 1.08001 * 125.90034 * 180.14354 * 20 19 18 40 40 H 1.09008 * 113.61408 * 105.47019 * 22 11 10 41 41 H 1.08998 * 113.69551 * 334.57869 * 22 11 10 42 42 H 1.09001 * 109.62129 * 180.64284 * 23 7 6 43 43 H 1.08995 * 109.61858 * 301.19417 * 23 7 6 44 44 H 1.09006 * 109.32614 * 79.77352 * 24 4 2 45 45 H 1.08995 * 109.33261 * 320.29230 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.5119 -0.0027 2.1693 6 7 2.9945 -0.5856 3.3349 7 6 3.1183 -2.0492 3.3978 8 6 3.2524 -2.4896 4.8327 9 8 2.9070 -1.7492 5.7290 10 7 3.7563 -3.7062 5.1200 11 6 3.8871 -4.1341 6.5151 12 1 3.9489 -3.2970 7.2104 13 6 2.8643 -5.2071 6.9309 14 6 4.0054 -5.8758 7.7155 15 1 4.0998 -5.5168 8.7402 16 6 4.0030 -7.4028 7.6188 17 7 3.1146 -7.9555 8.6443 18 6 2.0813 -8.7967 8.4300 19 6 1.5142 -9.0670 9.6284 20 6 2.2302 -8.3735 10.6096 21 7 3.1879 -7.7045 10.0205 22 6 4.9756 -5.1981 6.7334 23 6 1.8463 -2.6524 2.7847 24 6 1.7451 -2.1976 1.3270 25 1 -0.3933 0.4416 -0.7652 26 1 1.7925 -0.5138 -0.8899 27 1 1.5879 2.4585 -1.2243 28 1 1.5614 2.4680 1.2084 29 1 2.6194 1.0632 2.0325 30 1 3.2441 -0.0364 4.0946 31 1 3.9910 -2.3712 2.8294 32 1 4.0322 -4.2985 4.4032 33 1 2.4974 -5.8066 6.0978 34 1 2.0637 -4.8260 7.5646 35 1 5.0144 -7.7783 7.7737 36 1 3.6506 -7.7039 6.6322 37 1 1.7615 -9.1815 7.4728 38 1 0.6607 -9.7069 9.7977 39 1 2.0254 -8.3852 11.6700 40 1 5.8769 -4.8098 7.2080 41 1 5.1880 -5.7958 5.8470 42 1 1.9004 -3.7402 2.8260 43 1 0.9735 -2.3054 3.3378 44 1 2.5156 -2.6966 0.7391 45 1 0.7646 -2.4648 0.9330 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_15413834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:35:49 Heat of formation + Delta-G solvation = 62.447087 kcal Electronic energy + Delta-G solvation = -26195.985283 eV Core-core repulsion = 22410.921650 eV Total energy + Delta-G solvation = -3785.063633 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.07243 -41.52807 -40.19174 -39.08719 -37.49702 -35.25083 -33.74026 -33.28665 -32.77526 -30.97958 -28.73504 -27.42509 -26.75262 -25.42526 -24.31666 -23.33276 -22.04493 -21.84211 -21.51877 -20.51026 -19.12418 -19.04438 -18.40020 -18.24304 -17.62286 -17.23849 -16.55284 -16.26979 -16.17559 -15.88617 -15.43635 -15.27178 -15.04363 -14.75401 -14.56303 -14.37796 -14.29209 -14.00873 -13.87273 -13.66765 -13.48316 -13.32970 -13.31481 -13.13364 -12.88770 -12.55164 -12.31509 -11.87373 -11.77130 -11.62856 -11.55531 -11.47361 -11.27647 -10.84820 -10.32921 -10.28182 -10.12976 -9.47296 -8.45305 -4.92484 1.01030 1.30426 1.37969 1.43428 1.58613 1.68115 1.91725 1.95564 1.97022 2.62371 3.37572 3.48630 3.49330 3.57442 3.62414 3.72289 3.79925 3.92296 3.97911 4.04823 4.09369 4.19255 4.26004 4.33448 4.46718 4.51485 4.55813 4.60941 4.64920 4.67920 4.75984 4.79146 4.81086 4.90910 4.96365 5.02659 5.05004 5.15804 5.19689 5.21533 5.31374 5.51546 5.59159 5.75233 6.20571 6.26143 6.47223 6.69491 6.78601 6.79132 7.12361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.057 4.057 3 Si 0.742 3.258 4 C -0.245 4.245 5 C 0.134 3.866 6 N -0.739 5.739 7 C 0.139 3.861 8 C 0.511 3.489 9 O -0.581 6.581 10 N -0.696 5.696 11 C 0.119 3.881 12 H 0.085 0.915 13 C -0.141 4.141 14 C -0.117 4.117 15 H 0.077 0.923 16 C 0.140 3.860 17 N -0.375 5.375 18 C 0.055 3.945 19 C -0.295 4.295 20 C 0.027 3.973 21 N -0.339 5.339 22 C -0.114 4.114 23 C -0.121 4.121 24 C -0.054 4.054 25 H 0.387 0.613 26 H 0.087 0.913 27 H -0.294 1.294 28 H -0.309 1.309 29 H 0.136 0.864 30 H 0.406 0.594 31 H 0.125 0.875 32 H 0.423 0.577 33 H 0.109 0.891 34 H 0.041 0.959 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.208 0.792 38 H 0.159 0.841 39 H 0.193 0.807 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.107 0.893 43 H 0.042 0.958 44 H 0.092 0.908 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.982 -6.202 -7.077 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.167 4.167 3 Si 0.651 3.349 4 C -0.255 4.255 5 C 0.013 3.987 6 N -0.372 5.372 7 C 0.031 3.969 8 C 0.298 3.702 9 O -0.460 6.460 10 N -0.347 5.347 11 C 0.013 3.987 12 H 0.103 0.897 13 C -0.179 4.179 14 C -0.137 4.137 15 H 0.096 0.904 16 C 0.020 3.980 17 N -0.157 5.157 18 C -0.092 4.092 19 C -0.325 4.325 20 C -0.158 4.158 21 N -0.162 5.162 22 C -0.153 4.153 23 C -0.160 4.160 24 C -0.091 4.091 25 H 0.237 0.763 26 H 0.105 0.895 27 H -0.222 1.222 28 H -0.238 1.238 29 H 0.152 0.848 30 H 0.242 0.758 31 H 0.143 0.857 32 H 0.261 0.739 33 H 0.127 0.873 34 H 0.060 0.940 35 H 0.111 0.889 36 H 0.150 0.850 37 H 0.225 0.775 38 H 0.177 0.823 39 H 0.210 0.790 40 H 0.100 0.900 41 H 0.144 0.856 42 H 0.125 0.875 43 H 0.061 0.939 44 H 0.111 0.889 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.752 -4.453 -5.876 9.351 hybrid contribution -2.142 -0.148 0.026 2.147 sum 3.610 -4.601 -5.850 8.272 Atomic orbital electron populations 1.86573 1.19927 1.80310 1.50611 1.24671 0.82978 1.09713 0.99378 0.94664 0.91002 0.73877 0.75380 1.20128 1.09661 0.96933 0.98779 1.20506 0.94771 0.96849 0.86540 1.44384 1.72701 1.04908 1.15172 1.21188 1.01188 0.82710 0.91864 1.21004 0.76009 0.81970 0.91244 1.90731 1.50433 1.55046 1.49815 1.45749 1.63485 1.16615 1.08901 1.22415 0.97600 0.95677 0.82962 0.89667 1.23566 0.96581 0.97702 1.00082 1.22530 0.97940 0.93777 0.99423 0.90414 1.22042 0.94138 0.92615 0.89246 1.48980 1.25204 1.36189 1.05342 1.23186 0.89857 0.94344 1.01778 1.21870 1.07411 1.11143 0.92046 1.24300 0.93785 0.96069 1.01648 1.77263 1.24616 1.25364 0.88941 1.23303 0.96431 0.95521 1.00025 1.21827 0.95387 1.01951 0.96820 1.20011 1.02533 0.91455 0.95075 0.76324 0.89539 1.22217 1.23782 0.84755 0.75831 0.85737 0.73872 0.87269 0.94016 0.88876 0.84978 0.77535 0.82302 0.78975 0.89971 0.85609 0.87482 0.93864 0.88942 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -2.43 12.86 -148.98 -1.92 -4.34 16 2 C -0.06 -0.02 2.80 71.24 0.20 0.18 16 3 Si 0.74 -0.07 29.91 68.60 2.05 1.98 16 4 C -0.25 -0.39 5.40 -16.76 -0.09 -0.48 16 5 C 0.13 0.26 9.62 83.41 0.80 1.07 16 6 N -0.74 -1.31 5.47 -328.96 -1.80 -3.11 16 7 C 0.14 -0.37 3.36 44.33 0.15 -0.22 16 8 C 0.51 0.58 7.09 87.66 0.62 1.20 16 9 O -0.58 -6.79 15.68 -3.04 -0.05 -6.83 16 10 N -0.70 4.24 5.36 -439.75 -2.36 1.88 16 11 C 0.12 -0.38 4.24 45.57 0.19 -0.19 16 12 H 0.09 0.33 7.46 -2.39 -0.02 0.31 16 13 C -0.14 0.46 7.45 31.18 0.23 0.69 16 14 C -0.12 0.49 3.85 -10.27 -0.04 0.45 16 15 H 0.08 0.21 7.99 -2.39 -0.02 0.19 16 16 C 0.14 -0.86 6.33 86.38 0.55 -0.31 16 17 N -0.37 -0.58 3.68 -348.06 -1.28 -1.86 16 18 C 0.05 -0.06 11.45 83.54 0.96 0.90 16 19 C -0.30 -0.59 10.80 21.99 0.24 -0.35 16 20 C 0.03 0.14 12.03 85.23 1.02 1.17 16 21 N -0.34 -2.78 12.29 -57.03 -0.70 -3.48 16 22 C -0.11 1.03 7.39 31.12 0.23 1.26 16 23 C -0.12 0.28 5.47 30.79 0.17 0.44 16 24 C -0.05 0.08 5.85 29.70 0.17 0.25 16 25 H 0.39 -1.26 8.74 -74.05 -0.65 -1.91 16 26 H 0.09 -0.32 7.96 -2.39 -0.02 -0.34 16 27 H -0.29 -1.37 7.11 99.48 0.71 -0.66 16 28 H -0.31 -2.47 6.89 99.48 0.69 -1.78 16 29 H 0.14 0.09 4.34 -2.91 -0.01 0.08 16 30 H 0.41 1.33 8.10 -92.70 -0.75 0.57 16 31 H 0.13 -1.10 8.14 -2.39 -0.02 -1.12 16 32 H 0.42 -5.92 8.73 -92.71 -0.81 -6.73 16 33 H 0.11 -0.85 7.92 -2.39 -0.02 -0.87 16 34 H 0.04 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 36 H 0.13 -1.77 7.80 -2.39 -0.02 -1.79 16 37 H 0.21 -1.96 8.06 -2.91 -0.02 -1.98 16 38 H 0.16 -0.27 8.06 -2.91 -0.02 -0.30 16 39 H 0.19 0.13 8.06 -2.91 -0.02 0.11 16 40 H 0.08 -0.64 8.14 -2.38 -0.02 -0.66 16 41 H 0.13 -1.94 8.08 -2.39 -0.02 -1.96 16 42 H 0.11 -0.89 8.14 -2.39 -0.02 -0.91 16 43 H 0.04 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.09 -0.58 8.14 -2.38 -0.02 -0.60 16 45 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 Total: 0.00 -28.52 368.81 -1.81 -30.33 By element: Atomic # 1 Polarization: -19.45 SS G_CDS: -1.17 Total: -20.62 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.41 Total: 6.06 kcal Atomic # 7 Polarization: -0.43 SS G_CDS: -6.14 Total: -6.57 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -1.96 Total: -11.17 kcal Atomic # 14 Polarization: -0.07 SS G_CDS: 2.05 Total: 1.98 kcal Total: -28.52 -1.81 -30.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_15413834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.777 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds