Wall clock time and date at job start Sun Mar 7 2021 02:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86292 * 109.47232 * 2 1 4 4 C 1.50702 * 109.46824 * 120.00025 * 2 1 3 5 5 C 1.31112 * 118.54809 * 340.97899 * 4 2 1 6 6 N 1.38927 * 121.84643 * 179.61600 * 5 4 2 7 7 C 1.47031 * 118.88391 * 13.29647 * 6 5 4 8 8 C 1.53566 * 107.64599 * 316.32175 * 7 6 5 9 9 C 1.50210 * 118.54354 * 160.95609 * 4 2 1 10 10 C 1.50696 * 109.33063 * 320.31412 * 9 4 2 11 11 O 1.21284 * 119.99885 * 275.48319 * 10 9 4 12 12 N 1.34773 * 120.00390 * 95.48323 * 10 9 4 13 13 C 1.46499 * 120.00157 * 179.97438 * 12 10 9 14 14 H 1.08991 * 112.90751 * 23.75573 * 13 12 10 15 15 C 1.53783 * 113.61326 * 155.00529 * 13 12 10 16 16 C 1.53774 * 87.17514 * 139.93961 * 15 13 12 17 17 H 1.09002 * 113.61511 * 89.15810 * 16 15 13 18 18 C 1.53001 * 113.61550 * 220.05760 * 16 15 13 19 19 N 1.46498 * 109.46905 * 184.99872 * 18 16 15 20 20 C 1.34949 * 126.03352 * 124.72409 * 19 18 16 21 21 C 1.35318 * 107.74219 * 179.83648 * 20 19 18 22 22 C 1.39860 * 107.92146 * 0.41843 * 21 20 19 23 23 N 1.30834 * 108.20427 * 359.74014 * 22 21 20 24 24 C 1.53778 * 113.61409 * 252.49823 * 13 12 10 25 25 H 0.96700 * 114.00221 * 176.90386 * 1 2 3 26 26 H 1.08997 * 109.46744 * 239.99677 * 2 1 3 27 27 H 1.48506 * 110.00254 * 179.97438 * 3 2 1 28 28 H 1.48505 * 110.00310 * 301.31909 * 3 2 1 29 29 H 1.07993 * 119.07920 * 359.59493 * 5 4 2 30 30 H 0.97001 * 120.55754 * 193.27253 * 6 5 4 31 31 H 1.08996 * 109.82423 * 75.87326 * 7 6 5 32 32 H 1.09002 * 109.82053 * 196.73477 * 7 6 5 33 33 H 1.08998 * 109.63569 * 301.25388 * 8 7 6 34 34 H 1.08993 * 109.62092 * 180.68873 * 8 7 6 35 35 H 1.09006 * 109.32399 * 79.96557 * 9 4 2 36 36 H 0.97008 * 119.99752 * 0.02562 * 12 10 9 37 37 H 1.09004 * 113.61379 * 254.53194 * 15 13 12 38 38 H 1.09002 * 113.61657 * 25.34465 * 15 13 12 39 39 H 1.09000 * 109.47185 * 305.00398 * 18 16 15 40 40 H 1.08997 * 109.46719 * 64.99794 * 18 16 15 41 41 H 1.08002 * 126.12762 * 359.97438 * 20 19 18 42 42 H 1.08008 * 126.03766 * 180.15948 * 21 20 19 43 43 H 1.08006 * 125.89922 * 179.75821 * 22 21 20 44 44 H 1.08997 * 113.61884 * 334.56672 * 24 13 12 45 45 H 1.09003 * 113.61305 * 105.39284 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.1135 -0.8622 2.2440 6 7 1.5021 -1.5130 3.4084 7 6 2.9307 -1.7819 3.6287 8 6 3.5163 -2.2992 2.3067 9 6 3.3465 -1.2138 1.2412 10 6 3.6827 -1.7859 -0.1117 11 8 3.3893 -2.9329 -0.3751 12 7 4.3095 -1.0231 -1.0292 13 6 4.6369 -1.5795 -2.3442 14 1 3.9987 -2.4188 -2.6206 15 6 4.7685 -0.5163 -3.4475 16 6 5.9682 -1.3212 -3.9744 17 1 5.6947 -2.0898 -4.6973 18 6 7.1328 -0.4480 -4.4456 19 7 8.1712 -1.2960 -5.0360 20 6 8.6916 -1.1678 -6.2745 21 6 9.6214 -2.1380 -6.4336 22 6 9.6641 -2.8905 -5.2554 23 7 8.7953 -2.3867 -4.4170 24 6 6.1369 -1.8554 -2.5403 25 1 -0.3933 -0.8821 -0.0477 26 1 1.7923 -0.5139 -0.8900 27 1 3.5350 1.7701 0.0006 28 1 1.5355 2.4771 -1.1921 29 1 0.1099 -0.4701 2.1720 30 1 0.8420 -1.7850 4.0650 31 1 3.4384 -0.8638 3.9240 32 1 3.0491 -2.5362 4.4066 33 1 2.9860 -3.2003 1.9989 34 1 4.5754 -2.5211 2.4375 35 1 4.0218 -0.3869 1.4613 36 1 4.5445 -0.1058 -0.8184 37 1 3.9226 -0.4931 -4.1347 38 1 5.0362 0.4714 -3.0724 39 1 6.7759 0.2622 -5.1915 40 1 7.5466 0.0950 -3.5959 41 1 8.4169 -0.4229 -7.0067 42 1 10.2214 -2.3046 -7.3161 43 1 10.3041 -3.7405 -5.0697 44 1 6.7803 -1.2341 -1.9174 45 1 6.3961 -2.9131 -2.4937 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_15608500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:35:53 Heat of formation + Delta-G solvation = 56.677956 kcal Electronic energy + Delta-G solvation = -27095.490417 eV Core-core repulsion = 23310.176615 eV Total energy + Delta-G solvation = -3785.313801 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.10820 -41.64437 -40.23542 -38.95361 -37.49770 -35.24583 -33.93325 -33.11709 -32.31035 -30.98234 -28.69265 -27.13346 -26.80381 -26.23163 -24.03033 -23.07845 -21.97873 -21.90068 -21.52918 -20.76828 -19.25950 -18.71408 -18.30011 -18.15404 -17.97758 -17.20753 -16.59218 -16.33349 -15.81276 -15.75926 -15.40063 -15.22107 -15.05078 -14.98960 -14.75112 -14.43832 -14.06043 -13.95762 -13.86394 -13.60922 -13.56459 -13.49766 -13.18048 -13.00736 -12.51229 -12.39006 -12.25419 -12.08038 -11.92403 -11.66840 -11.60610 -11.43188 -11.19393 -10.94997 -10.76253 -10.37487 -10.15628 -9.51869 -8.26164 -4.81668 0.98187 1.26414 1.47838 1.57410 1.63347 1.66124 1.93527 2.06500 2.23509 2.72791 3.25388 3.35786 3.49871 3.58271 3.66764 3.72994 3.86177 3.92767 4.04392 4.05439 4.11172 4.17437 4.24907 4.28351 4.32906 4.42503 4.46349 4.57740 4.58998 4.66659 4.68030 4.74705 4.76393 4.83007 4.87606 4.91127 4.94871 5.11867 5.14142 5.21293 5.33638 5.45187 5.51822 5.73141 6.16034 6.38640 6.45029 6.66154 6.76805 7.02375 7.12727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.058 4.058 3 Si 0.794 3.206 4 C -0.312 4.312 5 C 0.172 3.828 6 N -0.749 5.749 7 C 0.123 3.877 8 C -0.124 4.124 9 C -0.041 4.041 10 C 0.523 3.477 11 O -0.582 6.582 12 N -0.715 5.715 13 C 0.113 3.887 14 H 0.089 0.911 15 C -0.122 4.122 16 C -0.108 4.108 17 H 0.084 0.916 18 C 0.140 3.860 19 N -0.377 5.377 20 C 0.052 3.948 21 C -0.292 4.292 22 C 0.026 3.974 23 N -0.332 5.332 24 C -0.131 4.131 25 H 0.373 0.627 26 H 0.044 0.956 27 H -0.246 1.246 28 H -0.301 1.301 29 H 0.157 0.843 30 H 0.412 0.588 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.409 0.591 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.092 0.908 41 H 0.207 0.793 42 H 0.161 0.839 43 H 0.194 0.806 44 H 0.091 0.909 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.019 6.350 2.087 6.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.167 4.167 3 Si 0.695 3.305 4 C -0.323 4.323 5 C 0.049 3.951 6 N -0.379 5.379 7 C -0.002 4.002 8 C -0.163 4.163 9 C -0.062 4.062 10 C 0.311 3.689 11 O -0.461 6.461 12 N -0.366 5.366 13 C 0.008 3.992 14 H 0.108 0.892 15 C -0.160 4.160 16 C -0.128 4.128 17 H 0.103 0.897 18 C 0.020 3.980 19 N -0.160 5.160 20 C -0.094 4.094 21 C -0.322 4.322 22 C -0.159 4.159 23 N -0.154 5.154 24 C -0.169 4.169 25 H 0.222 0.778 26 H 0.061 0.939 27 H -0.170 1.170 28 H -0.228 1.228 29 H 0.174 0.826 30 H 0.247 0.753 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.247 0.753 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.149 0.851 40 H 0.110 0.890 41 H 0.224 0.776 42 H 0.178 0.822 43 H 0.211 0.789 44 H 0.109 0.891 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.152 6.755 2.779 7.306 hybrid contribution 0.322 -1.871 -1.473 2.403 sum 0.170 4.884 1.306 5.059 Atomic orbital electron populations 1.86646 1.17920 1.34421 1.96864 1.25232 0.83874 1.12620 0.94995 0.92029 0.77871 0.75147 0.85468 1.20218 0.96641 1.16680 0.98747 1.20555 0.98690 0.90644 0.85206 1.44697 1.07732 1.64014 1.21444 1.21648 0.81573 1.01181 0.95773 1.21754 1.01992 0.97199 0.95326 1.19737 0.96650 0.98877 0.90936 1.21112 0.75286 0.85363 0.87111 1.90674 1.54706 1.19999 1.80771 1.46188 1.59858 1.16393 1.14186 1.22469 0.96084 0.98027 0.82619 0.89241 1.23329 0.97801 0.98419 0.96467 1.22501 0.95099 0.98674 0.96498 0.89724 1.21990 0.84466 0.90805 1.00789 1.48972 1.31405 1.24233 1.11406 1.23208 0.96245 1.01259 0.88678 1.21868 1.07306 1.01269 1.01709 1.24331 0.97840 1.00917 0.92852 1.77329 1.12970 1.01889 1.23199 1.23404 0.95901 1.01216 0.96427 0.77826 0.93894 1.17038 1.22819 0.82587 0.75256 0.90678 0.88584 0.92747 0.90160 0.87875 0.75340 0.89346 0.86970 0.85141 0.88973 0.77638 0.82157 0.78931 0.89099 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.88 11.14 -148.98 -1.66 -2.54 16 2 C -0.06 -0.09 2.48 71.24 0.18 0.09 16 3 Si 0.79 -1.06 32.77 68.60 2.25 1.19 16 4 C -0.31 -0.24 4.08 -16.75 -0.07 -0.31 16 5 C 0.17 -0.30 10.19 83.42 0.85 0.56 16 6 N -0.75 2.88 5.83 -345.86 -2.02 0.86 16 7 C 0.12 -0.51 7.16 86.47 0.62 0.11 16 8 C -0.12 -0.18 5.31 30.80 0.16 -0.02 16 9 C -0.04 -0.07 2.34 -12.43 -0.03 -0.10 16 10 C 0.52 3.67 5.26 87.66 0.46 4.13 16 11 O -0.58 -9.55 15.70 -3.04 -0.05 -9.60 16 12 N -0.71 -1.35 5.07 -440.06 -2.23 -3.58 16 13 C 0.11 0.27 4.24 45.52 0.19 0.46 16 14 H 0.09 0.72 7.47 -2.39 -0.02 0.71 16 15 C -0.12 0.53 7.39 31.12 0.23 0.76 16 16 C -0.11 0.15 3.83 -10.21 -0.04 0.11 16 17 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 18 C 0.14 -0.51 6.35 86.38 0.55 0.04 16 19 N -0.38 -1.11 3.68 -348.06 -1.28 -2.39 16 20 C 0.05 0.01 11.45 83.54 0.96 0.96 16 21 C -0.29 -0.76 10.80 21.99 0.24 -0.52 16 22 C 0.03 0.15 12.02 85.23 1.02 1.18 16 23 N -0.33 -2.94 12.42 -57.03 -0.71 -3.65 16 24 C -0.13 -0.36 7.44 31.18 0.23 -0.13 16 25 H 0.37 -0.85 9.01 -74.06 -0.67 -1.52 16 26 H 0.04 0.22 6.36 -2.39 -0.02 0.20 16 27 H -0.25 0.74 6.70 99.48 0.67 1.41 16 28 H -0.30 -1.72 7.11 99.48 0.71 -1.01 16 29 H 0.16 -0.67 6.86 -2.91 -0.02 -0.69 16 30 H 0.41 -3.05 8.96 -92.71 -0.83 -3.88 16 31 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 32 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 33 H 0.05 0.43 7.51 -2.39 -0.02 0.41 16 34 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.10 -0.27 8.04 -2.38 -0.02 -0.29 16 36 H 0.41 -1.17 7.94 -92.70 -0.74 -1.91 16 37 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 38 H 0.11 -0.95 8.08 -2.39 -0.02 -0.97 16 39 H 0.13 -1.32 8.07 -2.39 -0.02 -1.33 16 40 H 0.09 -0.43 7.85 -2.39 -0.02 -0.45 16 41 H 0.21 -1.65 8.06 -2.91 -0.02 -1.67 16 42 H 0.16 -0.22 8.06 -2.91 -0.02 -0.24 16 43 H 0.19 0.23 8.06 -2.91 -0.02 0.20 16 44 H 0.09 0.14 7.90 -2.39 -0.02 0.12 16 45 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 Total: 0.00 -23.00 367.80 -1.35 -24.35 By element: Atomic # 1 Polarization: -10.76 SS G_CDS: -1.21 Total: -11.97 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 5.56 Total: 7.33 kcal Atomic # 7 Polarization: -2.52 SS G_CDS: -6.24 Total: -8.76 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -1.71 Total: -12.14 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: 2.25 Total: 1.19 kcal Total: -23.00 -1.35 -24.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_15608500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.029 kcal (2) G-P(sol) polarization free energy of solvation -23.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds