Wall clock time and date at job start Sun Mar 7 2021 02:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86289 * 109.47336 * 2 1 4 4 C 1.50698 * 109.46865 * 239.99600 * 2 1 3 5 5 C 1.34497 * 125.49165 * 150.31594 * 4 2 1 6 6 C 1.46757 * 106.36509 * 180.13058 * 5 4 2 7 7 C 1.47263 * 126.96980 * 179.86213 * 6 5 4 8 8 O 1.21621 * 120.00279 * 179.68382 * 7 6 5 9 9 N 1.34782 * 119.99932 * 359.67351 * 7 6 5 10 10 C 1.46496 * 120.00189 * 180.02562 * 9 7 6 11 11 H 1.09004 * 112.84458 * 336.20108 * 10 9 7 12 12 C 1.53953 * 113.74368 * 107.40404 * 10 9 7 13 13 C 1.53778 * 87.01978 * 139.94665 * 12 10 9 14 14 H 1.08997 * 113.61648 * 89.22791 * 13 12 10 15 15 C 1.52995 * 113.61725 * 220.05074 * 13 12 10 16 16 N 1.46500 * 109.47185 * 274.13825 * 15 13 12 17 17 C 1.34947 * 126.04040 * 125.00042 * 16 15 13 18 18 C 1.35311 * 107.75028 * 180.02562 * 17 16 15 19 19 C 1.39876 * 107.91749 * 359.97438 * 18 17 16 20 20 N 1.30834 * 108.20073 * 0.27043 * 19 18 17 21 21 C 1.53778 * 113.61802 * 205.00607 * 10 9 7 22 22 C 1.36330 * 106.06247 * 359.59257 * 6 5 4 23 23 C 1.50997 * 126.79610 * 180.25911 * 22 6 5 24 24 C 1.53385 * 108.25629 * 164.32403 * 23 22 6 25 25 C 1.53164 * 109.04377 * 48.46186 * 24 23 22 26 26 C 1.53133 * 109.52559 * 290.42784 * 25 24 23 27 27 N 1.35217 * 108.65931 * 0.25592 * 22 6 5 28 28 H 0.96705 * 113.99353 * 60.00185 * 1 2 3 29 29 H 1.09004 * 109.46883 * 119.99941 * 2 1 3 30 30 H 1.48505 * 110.00249 * 298.67800 * 3 2 1 31 31 H 1.48498 * 110.00345 * 59.99879 * 3 2 1 32 32 H 1.07998 * 126.81834 * 0.02562 * 5 4 2 33 33 H 0.97003 * 119.99717 * 0.02562 * 9 7 6 34 34 H 1.09002 * 113.61229 * 25.42696 * 12 10 9 35 35 H 1.08998 * 113.66856 * 254.47284 * 12 10 9 36 36 H 1.09001 * 109.47451 * 154.13679 * 15 13 12 37 37 H 1.09007 * 109.47149 * 34.13429 * 15 13 12 38 38 H 1.08009 * 126.12562 * 359.96327 * 17 16 15 39 39 H 1.07992 * 126.04231 * 179.97438 * 18 17 16 40 40 H 1.08002 * 125.89548 * 179.97438 * 19 18 17 41 41 H 1.09005 * 113.61870 * 105.38448 * 21 10 9 42 42 H 1.09007 * 113.61095 * 334.48272 * 21 10 9 43 43 H 1.09004 * 109.70325 * 284.02575 * 23 22 6 44 44 H 1.09000 * 109.70208 * 44.63873 * 23 22 6 45 45 H 1.09007 * 109.54390 * 288.59264 * 24 23 22 46 46 H 1.08996 * 109.54662 * 168.33356 * 24 23 22 47 47 H 1.09001 * 109.45889 * 170.40767 * 25 24 23 48 48 H 1.08998 * 109.46046 * 50.44605 * 25 24 23 49 49 H 1.09003 * 109.55844 * 291.16991 * 26 25 24 50 50 H 1.08999 * 109.65755 * 170.89365 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7563 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 3.0886 -0.4505 -1.8646 6 6 3.1553 -1.3779 -3.0000 7 6 4.2336 -1.4802 -3.9977 8 8 4.1611 -2.3043 -4.8892 9 7 5.3009 -0.6604 -3.9230 10 6 6.3733 -0.7618 -4.9158 11 1 6.4224 -1.7435 -5.3870 12 6 6.4003 0.4044 -5.9205 13 6 7.9330 0.3662 -5.8011 14 1 8.4098 -0.3065 -6.5139 15 6 8.5799 1.7523 -5.7681 16 7 8.8029 2.2199 -7.1385 17 6 8.3608 3.3822 -7.6626 18 6 8.7750 3.4383 -8.9496 19 6 9.4954 2.2705 -9.2211 20 7 9.5080 1.5369 -8.1378 21 6 7.7330 -0.2536 -4.4080 22 6 2.0195 -2.1296 -2.9403 23 6 1.6159 -3.2351 -3.8864 24 6 0.4943 -4.0468 -3.2262 25 6 -0.5704 -3.0847 -2.6909 26 6 -0.0059 -2.3095 -1.4970 27 7 1.2885 -1.7252 -1.8771 28 1 -0.3932 0.4417 -0.7651 29 1 1.7924 -0.5138 0.8900 30 1 1.5881 2.4585 -1.2243 31 1 1.5616 2.4678 1.2084 32 1 3.8221 0.2942 -1.5932 33 1 5.3588 -0.0033 -3.2118 34 1 5.9551 1.3221 -5.5362 35 1 6.0327 0.1370 -6.9112 36 1 9.5338 1.6957 -5.2438 37 1 7.9209 2.4486 -5.2494 38 1 7.7796 4.1327 -7.1475 39 1 8.5832 4.2425 -9.6443 40 1 9.9569 2.0159 -10.1638 41 1 8.4398 -1.0513 -4.1795 42 1 7.6528 0.4840 -3.6094 43 1 1.2574 -2.8056 -4.8219 44 1 2.4713 -3.8817 -4.0822 45 1 0.9039 -4.6321 -2.4028 46 1 0.0457 -4.7144 -3.9618 47 1 -1.4461 -3.6516 -2.3747 48 1 -0.8553 -2.3848 -3.4765 49 1 0.1328 -2.9871 -0.6545 50 1 -0.6969 -1.5146 -1.2161 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_16915396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:35:57 Heat of formation + Delta-G solvation = 81.931152 kcal Electronic energy + Delta-G solvation = -31596.381236 eV Core-core repulsion = 27400.172595 eV Total energy + Delta-G solvation = -4196.208641 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.79549 -42.01798 -40.85238 -39.22218 -38.08473 -36.91773 -35.01363 -33.62940 -33.27087 -31.17163 -30.95648 -29.65036 -28.34165 -26.69590 -26.57911 -24.81300 -24.68539 -23.13668 -22.00529 -21.78144 -21.51367 -21.19233 -20.38957 -19.55414 -18.85581 -18.20835 -17.52159 -17.16865 -16.71151 -16.59989 -16.26363 -16.19015 -15.99906 -15.65468 -15.37748 -15.33463 -15.12852 -15.07284 -14.69017 -14.55058 -14.47731 -14.32103 -14.05677 -13.85993 -13.62273 -13.41784 -13.27062 -13.19057 -12.86793 -12.75599 -12.43397 -12.21134 -12.15838 -12.02439 -11.85216 -11.80075 -11.75981 -11.50953 -11.41026 -10.88026 -10.83939 -10.29385 -10.02717 -9.54737 -9.43926 -9.04565 -4.89391 0.71345 1.04402 1.07191 1.44659 1.70089 1.71692 1.79858 1.98468 2.05597 2.45068 2.54209 3.18814 3.45980 3.46572 3.55180 3.56642 3.59894 3.66949 3.76227 3.79401 3.85173 3.97847 4.12110 4.13996 4.26804 4.29116 4.35466 4.36800 4.39730 4.52537 4.56502 4.62529 4.65688 4.73340 4.74676 4.75386 4.80705 4.83412 4.86099 4.93594 4.94583 4.98095 5.03208 5.09416 5.15048 5.16907 5.18919 5.33706 5.65892 5.74487 5.78389 6.02580 6.21221 6.23833 6.34168 6.72865 6.81897 7.39883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.058 4.058 3 Si 0.807 3.193 4 C -0.019 4.019 5 C -0.157 4.157 6 C -0.255 4.255 7 C 0.587 3.413 8 O -0.595 6.595 9 N -0.700 5.700 10 C 0.120 3.880 11 H 0.084 0.916 12 C -0.140 4.140 13 C -0.115 4.115 14 H 0.078 0.922 15 C 0.140 3.860 16 N -0.374 5.374 17 C 0.055 3.945 18 C -0.296 4.296 19 C 0.027 3.973 20 N -0.339 5.339 21 C -0.115 4.115 22 C 0.099 3.901 23 C -0.054 4.054 24 C -0.125 4.125 25 C -0.134 4.134 26 C 0.095 3.905 27 N -0.429 5.429 28 H 0.385 0.615 29 H 0.130 0.870 30 H -0.290 1.290 31 H -0.298 1.298 32 H 0.188 0.812 33 H 0.417 0.583 34 H 0.106 0.894 35 H 0.041 0.959 36 H 0.094 0.906 37 H 0.132 0.868 38 H 0.207 0.793 39 H 0.159 0.841 40 H 0.194 0.806 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.107 0.893 48 H 0.070 0.930 49 H 0.084 0.916 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 4.919 5.932 7.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.166 4.166 3 Si 0.710 3.290 4 C -0.127 4.127 5 C -0.181 4.181 6 C -0.265 4.265 7 C 0.378 3.622 8 O -0.477 6.477 9 N -0.351 5.351 10 C 0.015 3.985 11 H 0.102 0.898 12 C -0.179 4.179 13 C -0.135 4.135 14 H 0.096 0.904 15 C 0.020 3.980 16 N -0.157 5.157 17 C -0.092 4.092 18 C -0.325 4.325 19 C -0.158 4.158 20 N -0.161 5.161 21 C -0.154 4.154 22 C -0.019 4.019 23 C -0.092 4.092 24 C -0.162 4.162 25 C -0.171 4.171 26 C -0.024 4.024 27 N -0.105 5.105 28 H 0.235 0.765 29 H 0.147 0.853 30 H -0.217 1.217 31 H -0.226 1.226 32 H 0.205 0.795 33 H 0.255 0.745 34 H 0.124 0.876 35 H 0.060 0.940 36 H 0.112 0.888 37 H 0.150 0.850 38 H 0.224 0.776 39 H 0.177 0.823 40 H 0.210 0.790 41 H 0.099 0.901 42 H 0.143 0.857 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.106 0.894 47 H 0.125 0.875 48 H 0.089 0.911 49 H 0.102 0.898 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.385 3.597 6.703 7.732 hybrid contribution -1.322 0.413 -1.168 1.812 sum -2.708 4.010 5.535 7.352 Atomic orbital electron populations 1.86571 1.18482 1.79861 1.50393 1.25108 0.83232 1.12060 0.96184 0.93479 0.89741 0.69530 0.76217 1.21001 0.96363 0.95498 0.99886 1.22024 0.98306 1.02593 0.95130 1.19986 0.97901 1.06244 1.02368 1.17655 0.81716 0.79723 0.83115 1.90742 1.80092 1.39005 1.37894 1.45554 1.19715 1.38178 1.31617 1.22366 0.87137 0.98746 0.90249 0.89830 1.23562 0.95560 0.99852 0.98921 1.22514 0.95361 0.96470 0.99130 0.90353 1.22045 1.02904 0.96102 0.76961 1.48984 1.40826 1.14737 1.11111 1.23183 0.99842 0.90831 0.95331 1.21862 1.10243 1.02518 0.97866 1.24301 0.99665 0.93801 0.98064 1.77264 1.18543 1.22075 0.98263 1.23312 0.94539 1.01247 0.96266 1.20557 0.91999 0.98165 0.91211 1.20410 0.99402 0.93589 0.95751 1.21698 0.95438 0.97933 1.01147 1.21922 0.99360 0.98750 0.97081 1.22426 0.82181 0.99327 0.98498 1.44039 1.17851 1.27169 1.21422 0.76512 0.85288 1.21679 1.22551 0.79472 0.74477 0.87558 0.93997 0.88783 0.85008 0.77582 0.82302 0.78957 0.90058 0.85664 0.90430 0.90287 0.91511 0.89391 0.87497 0.91095 0.89783 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.48 10.28 -148.98 -1.53 -0.05 16 2 C -0.06 0.26 3.00 71.24 0.21 0.47 16 3 Si 0.81 -5.16 31.12 68.60 2.13 -3.03 16 4 C -0.02 0.02 6.14 40.99 0.25 0.27 16 5 C -0.16 0.31 9.09 23.64 0.21 0.52 16 6 C -0.26 -1.30 6.28 -19.12 -0.12 -1.42 16 7 C 0.59 4.62 7.81 86.62 0.68 5.30 16 8 O -0.59 -9.74 14.93 -4.10 -0.06 -9.80 16 9 N -0.70 0.26 5.36 -443.18 -2.37 -2.12 16 10 C 0.12 0.05 4.24 45.58 0.19 0.24 16 11 H 0.08 0.61 7.46 -2.39 -0.02 0.59 16 12 C -0.14 0.09 7.45 31.18 0.23 0.32 16 13 C -0.11 0.27 3.85 -10.27 -0.04 0.23 16 14 H 0.08 0.33 7.98 -2.39 -0.02 0.31 16 15 C 0.14 -0.67 6.33 86.38 0.55 -0.13 16 16 N -0.37 -0.95 3.68 -348.06 -1.28 -2.23 16 17 C 0.05 -0.01 11.45 83.54 0.96 0.95 16 18 C -0.30 -0.78 10.80 21.99 0.24 -0.54 16 19 C 0.03 0.16 12.03 85.24 1.03 1.18 16 20 N -0.34 -3.05 12.28 -57.02 -0.70 -3.75 16 21 C -0.12 0.73 7.40 31.12 0.23 0.96 16 22 C 0.10 0.55 6.57 41.69 0.27 0.82 16 23 C -0.05 -0.27 5.32 30.07 0.16 -0.11 16 24 C -0.12 0.09 5.98 30.78 0.18 0.27 16 25 C -0.13 0.49 5.92 30.69 0.18 0.67 16 26 C 0.10 -0.25 6.22 86.33 0.54 0.29 16 27 N -0.43 -0.60 3.11 -493.62 -1.54 -2.14 16 28 H 0.39 -2.72 8.27 -74.05 -0.61 -3.33 16 29 H 0.13 -0.77 7.96 -2.38 -0.02 -0.79 16 30 H -0.29 0.19 7.11 99.48 0.71 0.90 16 31 H -0.30 -0.29 7.11 99.48 0.71 0.42 16 32 H 0.19 -2.01 6.54 -2.91 -0.02 -2.02 16 33 H 0.42 -3.27 7.85 -92.71 -0.73 -3.99 16 34 H 0.11 -0.52 7.92 -2.39 -0.02 -0.54 16 35 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H 0.13 -1.57 7.80 -2.38 -0.02 -1.59 16 38 H 0.21 -1.77 8.06 -2.91 -0.02 -1.79 16 39 H 0.16 -0.19 8.06 -2.91 -0.02 -0.21 16 40 H 0.19 0.23 8.06 -2.91 -0.02 0.21 16 41 H 0.08 -0.44 8.14 -2.38 -0.02 -0.46 16 42 H 0.13 -1.61 8.08 -2.38 -0.02 -1.63 16 43 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.08 0.71 7.40 -2.39 -0.02 0.69 16 45 H 0.07 -0.01 8.12 -2.38 -0.02 -0.03 16 46 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 47 H 0.11 -0.77 8.14 -2.39 -0.02 -0.79 16 48 H 0.07 -0.19 8.11 -2.39 -0.02 -0.21 16 49 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 50 H 0.11 -0.53 5.67 -2.39 -0.01 -0.54 16 Total: 0.00 -28.26 401.18 0.27 -27.99 By element: Atomic # 1 Polarization: -14.84 SS G_CDS: -0.33 Total: -15.17 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.95 Total: 10.30 kcal Atomic # 7 Polarization: -4.34 SS G_CDS: -5.89 Total: -10.23 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -1.59 Total: -9.85 kcal Atomic # 14 Polarization: -5.16 SS G_CDS: 2.13 Total: -3.03 kcal Total: -28.26 0.27 -27.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_16915396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.916 kcal (2) G-P(sol) polarization free energy of solvation -28.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds