Wall clock time and date at job start Sun Mar 7 2021 02:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.47190 * 2 1 4 4 C 1.50697 * 109.47273 * 239.99451 * 2 1 3 5 5 C 1.38264 * 119.94570 * 300.00170 * 4 2 1 6 6 C 1.38143 * 120.05408 * 180.02562 * 5 4 2 7 7 C 1.38735 * 119.94614 * 359.97438 * 6 5 4 8 8 O 1.35895 * 120.05474 * 180.02562 * 7 6 5 9 9 C 1.42907 * 117.00064 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47247 * 179.97438 * 9 8 7 11 11 O 1.21287 * 120.00202 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99949 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99961 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.84846 * 336.19554 * 13 12 10 15 15 C 1.53773 * 113.68848 * 107.46322 * 13 12 10 16 16 C 1.53783 * 87.08021 * 139.99245 * 15 13 12 17 17 H 1.08999 * 113.69310 * 89.12249 * 16 15 13 18 18 C 1.53004 * 113.61606 * 220.01717 * 16 15 13 19 19 N 1.46494 * 109.47106 * 272.49516 * 18 16 15 20 20 C 1.34954 * 126.03475 * 124.99860 * 19 18 16 21 21 C 1.35316 * 107.74368 * 179.73518 * 20 19 18 22 22 C 1.39868 * 107.92272 * 0.02562 * 21 20 19 23 23 N 1.30837 * 108.20148 * 359.97438 * 22 21 20 24 24 C 1.53774 * 113.61241 * 205.00202 * 13 12 10 25 25 C 1.38727 * 119.88690 * 0.27563 * 7 6 5 26 26 C 1.38148 * 119.94655 * 359.43116 * 25 7 6 27 27 H 0.96701 * 113.99487 * 60.00329 * 1 2 3 28 28 H 1.09003 * 109.46776 * 119.99678 * 2 1 3 29 29 H 1.48503 * 109.99972 * 298.67542 * 3 2 1 30 30 H 1.48497 * 110.00364 * 59.99282 * 3 2 1 31 31 H 1.07999 * 119.97136 * 359.97438 * 5 4 2 32 32 H 1.07996 * 120.02719 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.46745 * 59.99181 * 9 8 7 34 34 H 1.08998 * 109.46690 * 299.99345 * 9 8 7 35 35 H 0.97000 * 119.99809 * 0.02562 * 12 10 9 36 36 H 1.08996 * 113.61884 * 25.44616 * 15 13 12 37 37 H 1.09004 * 113.61483 * 254.53464 * 15 13 12 38 38 H 1.08999 * 109.46666 * 152.49349 * 18 16 15 39 39 H 1.09007 * 109.46675 * 32.49721 * 18 16 15 40 40 H 1.07999 * 126.12426 * 359.75442 * 20 19 18 41 41 H 1.07999 * 126.03437 * 179.97438 * 21 20 19 42 42 H 1.08001 * 125.89990 * 179.97438 * 22 21 20 43 43 H 1.09001 * 113.61829 * 105.38473 * 24 13 12 44 44 H 1.09004 * 113.69343 * 334.49084 * 24 13 12 45 45 H 1.08003 * 120.02593 * 179.71926 * 25 7 6 46 46 H 1.07995 * 119.97831 * 180.27067 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5966 -2.0343 -1.4479 6 6 2.0563 -2.6879 -2.5748 7 6 2.8540 -2.0149 -3.4888 8 8 3.3071 -2.6556 -4.5983 9 6 4.1241 -1.9006 -5.4953 10 6 4.5295 -2.7696 -6.6578 11 8 4.1560 -3.9222 -6.7126 12 7 5.3071 -2.2660 -7.6367 13 6 5.7017 -3.1111 -8.7666 14 1 5.6773 -4.1745 -8.5285 15 6 4.9872 -2.7576 -10.0815 16 6 6.3324 -3.0005 -10.7861 17 1 6.4817 -4.0333 -11.1009 18 6 6.6339 -1.9915 -11.8961 19 7 6.0503 -2.4615 -13.1549 20 6 5.1950 -1.7728 -13.9395 21 6 4.8976 -2.5498 -15.0066 22 6 5.5944 -3.7548 -14.8693 23 7 6.2859 -3.7029 -13.7598 24 6 7.0060 -2.6616 -9.4459 25 6 3.1927 -0.6882 -3.2655 26 6 2.7255 -0.0372 -2.1402 27 1 -0.3932 0.4417 -0.7651 28 1 1.7922 -0.5138 0.8901 29 1 1.5880 2.4585 -1.2243 30 1 1.5614 2.4680 1.2083 31 1 0.9759 -2.5579 -0.7359 32 1 1.7943 -3.7218 -2.7445 33 1 5.0156 -1.5555 -4.9717 34 1 3.5627 -1.0413 -5.8621 35 1 5.6061 -1.3443 -7.5927 36 1 4.6494 -1.7225 -10.1304 37 1 4.2121 -3.4706 -10.3627 38 1 7.7130 -1.8900 -12.0114 39 1 6.2037 -1.0246 -11.6348 40 1 4.8162 -0.7794 -13.7497 41 1 4.2379 -2.2864 -15.8202 42 1 5.5665 -4.5847 -15.5599 43 1 7.8607 -3.2970 -9.2138 44 1 7.2215 -1.6003 -9.3216 45 1 3.8173 -0.1634 -3.9733 46 1 2.9853 0.9969 -1.9681 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_2989410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:36:06 Heat of formation + Delta-G solvation = 37.084140 kcal Electronic energy + Delta-G solvation = -28020.800612 eV Core-core repulsion = 23880.466216 eV Total energy + Delta-G solvation = -4140.334396 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.06839 -41.60990 -40.94785 -39.69687 -38.86920 -37.23843 -35.23685 -33.61269 -32.38618 -31.74200 -31.00091 -29.86892 -28.22767 -26.76128 -26.24661 -24.50632 -23.70271 -22.40832 -22.04047 -21.78844 -21.52956 -20.46248 -19.51071 -18.55318 -18.25541 -18.09318 -17.44641 -17.33097 -16.84962 -16.42830 -16.30220 -16.21101 -16.00535 -15.57079 -15.51396 -15.27972 -14.90269 -14.61633 -14.51514 -14.37160 -14.20802 -13.75283 -13.67334 -13.53459 -13.49038 -13.43082 -13.33509 -12.88152 -12.37011 -12.26848 -12.13690 -12.06116 -11.88171 -11.62920 -11.56056 -11.47080 -11.00324 -10.58940 -10.33119 -10.16278 -10.03879 -9.47230 -9.23715 -4.90150 0.27058 0.30800 1.01102 1.34426 1.40362 1.48065 1.62167 1.69370 1.95694 1.99656 2.59420 2.64841 3.36448 3.43977 3.47922 3.48737 3.57691 3.72672 3.75087 3.82820 3.92005 3.94829 4.03438 4.09381 4.10593 4.19054 4.31020 4.33417 4.42393 4.51215 4.56002 4.60430 4.67175 4.69627 4.75803 4.80262 4.90735 4.95880 4.97206 5.02272 5.15652 5.15814 5.18362 5.25275 5.49297 5.49993 5.69768 5.75334 6.20858 6.26408 6.47103 6.50877 6.78746 7.12590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.084 4.084 3 Si 0.774 3.226 4 C -0.159 4.159 5 C -0.061 4.061 6 C -0.168 4.168 7 C 0.121 3.879 8 O -0.322 6.322 9 C 0.037 3.963 10 C 0.511 3.489 11 O -0.578 6.578 12 N -0.695 5.695 13 C 0.118 3.882 14 H 0.083 0.917 15 C -0.141 4.141 16 C -0.118 4.118 17 H 0.077 0.923 18 C 0.140 3.860 19 N -0.375 5.375 20 C 0.055 3.945 21 C -0.296 4.296 22 C 0.027 3.973 23 N -0.340 5.340 24 C -0.114 4.114 25 C -0.198 4.198 26 C -0.075 4.075 27 H 0.386 0.614 28 H 0.120 0.880 29 H -0.277 1.277 30 H -0.308 1.308 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.425 0.575 36 H 0.112 0.888 37 H 0.042 0.958 38 H 0.093 0.907 39 H 0.133 0.867 40 H 0.208 0.792 41 H 0.159 0.841 42 H 0.193 0.807 43 H 0.081 0.919 44 H 0.128 0.872 45 H 0.168 0.832 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.254 10.500 -1.361 11.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.192 4.192 3 Si 0.679 3.321 4 C -0.159 4.159 5 C -0.079 4.079 6 C -0.187 4.187 7 C 0.075 3.925 8 O -0.236 6.236 9 C -0.041 4.041 10 C 0.297 3.703 11 O -0.457 6.457 12 N -0.349 5.349 13 C 0.013 3.987 14 H 0.101 0.899 15 C -0.179 4.179 16 C -0.138 4.138 17 H 0.096 0.904 18 C 0.020 3.980 19 N -0.157 5.157 20 C -0.092 4.092 21 C -0.325 4.325 22 C -0.158 4.158 23 N -0.162 5.162 24 C -0.152 4.152 25 C -0.217 4.217 26 C -0.092 4.092 27 H 0.235 0.765 28 H 0.138 0.862 29 H -0.204 1.204 30 H -0.237 1.237 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.264 0.736 36 H 0.130 0.870 37 H 0.061 0.939 38 H 0.112 0.888 39 H 0.151 0.849 40 H 0.225 0.775 41 H 0.177 0.823 42 H 0.210 0.790 43 H 0.100 0.900 44 H 0.146 0.854 45 H 0.185 0.815 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.723 9.426 -0.010 11.028 hybrid contribution -1.866 -0.119 -1.192 2.217 sum 3.858 9.308 -1.201 10.147 Atomic orbital electron populations 1.86570 1.18864 1.80418 1.50165 1.25269 0.83238 1.12168 0.98527 0.94140 0.90085 0.71494 0.76392 1.20300 1.02099 0.95116 0.98419 1.20895 0.97164 0.94109 0.95727 1.20616 1.01661 1.01235 0.95179 1.19217 0.94646 0.92085 0.86507 1.86135 1.65164 1.40471 1.31796 1.22782 0.97850 0.94127 0.89338 1.20696 0.78187 0.87523 0.83887 1.90775 1.55604 1.20617 1.78701 1.45617 1.51123 1.16558 1.21581 1.22388 0.96672 0.95621 0.83997 0.89867 1.23560 0.96409 1.03049 0.94915 1.22536 0.97329 0.99895 0.94004 0.90449 1.22044 1.00093 0.97969 0.77896 1.48979 1.35729 1.11568 1.19447 1.23191 0.93865 1.00093 0.92010 1.21873 1.10773 0.95982 1.03853 1.24299 0.96002 0.99923 0.95549 1.77266 1.25630 1.01996 1.11351 1.23317 0.95697 1.04588 0.91636 1.21509 1.05722 0.93114 1.01324 1.21081 0.95268 1.00208 0.92652 0.76533 0.86178 1.20351 1.23693 0.85021 0.85820 0.85146 0.85478 0.73596 0.87002 0.93917 0.88839 0.84885 0.77492 0.82297 0.78989 0.90047 0.85393 0.81509 0.82793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.41 12.77 -148.98 -1.90 -3.31 16 2 C -0.08 0.10 2.82 71.24 0.20 0.30 16 3 Si 0.77 -3.00 29.78 68.60 2.04 -0.96 16 4 C -0.16 0.08 5.39 -19.85 -0.11 -0.02 16 5 C -0.06 -0.15 9.60 22.25 0.21 0.06 16 6 C -0.17 -0.78 9.99 22.37 0.22 -0.56 16 7 C 0.12 0.31 6.69 22.51 0.15 0.46 16 8 O -0.32 -1.67 9.67 -73.33 -0.71 -2.38 16 9 C 0.04 -0.18 5.22 71.23 0.37 0.19 16 10 C 0.51 0.77 7.91 87.66 0.69 1.46 16 11 O -0.58 -8.50 16.10 15.99 0.26 -8.25 16 12 N -0.69 4.68 5.36 -440.04 -2.36 2.32 16 13 C 0.12 -0.38 4.24 45.51 0.19 -0.19 16 14 H 0.08 0.37 7.46 -2.39 -0.02 0.36 16 15 C -0.14 0.52 7.43 31.12 0.23 0.75 16 16 C -0.12 0.53 3.87 -10.26 -0.04 0.49 16 17 H 0.08 0.20 7.97 -2.39 -0.02 0.18 16 18 C 0.14 -0.93 6.35 86.38 0.55 -0.38 16 19 N -0.37 -0.44 3.68 -348.06 -1.28 -1.72 16 20 C 0.05 -0.08 11.45 83.54 0.96 0.88 16 21 C -0.30 -0.50 10.80 21.99 0.24 -0.26 16 22 C 0.03 0.14 12.03 85.24 1.02 1.16 16 23 N -0.34 -2.71 12.28 -57.02 -0.70 -3.41 16 24 C -0.11 1.06 7.39 31.12 0.23 1.29 16 25 C -0.20 0.79 9.04 22.37 0.20 0.99 16 26 C -0.07 0.30 8.66 22.26 0.19 0.49 16 27 H 0.39 -1.21 8.70 -74.06 -0.64 -1.86 16 28 H 0.12 -0.26 7.96 -2.39 -0.02 -0.28 16 29 H -0.28 0.31 7.11 99.48 0.71 1.02 16 30 H -0.31 -1.46 7.11 99.48 0.71 -0.75 16 31 H 0.13 0.25 8.06 -2.91 -0.02 0.23 16 32 H 0.12 0.69 8.06 -2.91 -0.02 0.67 16 33 H 0.13 -1.58 7.65 -2.39 -0.02 -1.60 16 34 H 0.13 -1.50 7.67 -2.39 -0.02 -1.52 16 35 H 0.42 -6.77 8.73 -92.71 -0.81 -7.58 16 36 H 0.11 -0.99 7.90 -2.39 -0.02 -1.00 16 37 H 0.04 0.14 8.14 -2.38 -0.02 0.12 16 38 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 39 H 0.13 -1.87 7.77 -2.38 -0.02 -1.89 16 40 H 0.21 -2.07 8.06 -2.91 -0.02 -2.09 16 41 H 0.16 -0.32 8.06 -2.91 -0.02 -0.35 16 42 H 0.19 0.10 8.06 -2.91 -0.02 0.07 16 43 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 44 H 0.13 -2.07 8.08 -2.38 -0.02 -2.09 16 45 H 0.17 -1.99 6.30 -2.91 -0.02 -2.00 16 46 H 0.16 -1.43 4.87 -2.91 -0.01 -1.44 16 Total: 0.00 -34.25 388.50 0.48 -33.77 By element: Atomic # 1 Polarization: -22.79 SS G_CDS: -0.40 Total: -23.19 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 5.52 Total: 7.13 kcal Atomic # 7 Polarization: 1.53 SS G_CDS: -4.34 Total: -2.81 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -2.35 Total: -13.94 kcal Atomic # 14 Polarization: -3.00 SS G_CDS: 2.04 Total: -0.96 kcal Total: -34.25 0.48 -33.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_2989410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.853 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds