Wall clock time and date at job start Sun Mar 7 2021 02:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86289 * 109.47570 * 2 1 4 4 C 1.50705 * 109.46728 * 120.00313 * 2 1 3 5 5 C 1.38270 * 119.93813 * 245.27253 * 4 2 1 6 6 C 1.38147 * 120.05177 * 180.24023 * 5 4 2 7 7 C 1.38736 * 119.94540 * 359.46077 * 6 5 4 8 8 O 1.35892 * 120.05957 * 180.26040 * 7 6 5 9 9 C 1.42899 * 117.00396 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47431 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.47158 * 179.97438 * 10 9 8 12 12 O 1.21287 * 120.00349 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99989 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00142 * 179.97438 * 13 11 10 15 15 H 1.09002 * 112.84645 * 23.80955 * 14 13 11 16 16 C 1.53773 * 113.61412 * 154.99921 * 14 13 11 17 17 C 1.53780 * 87.07990 * 139.98454 * 16 14 13 18 18 H 1.09000 * 113.61521 * 89.11631 * 17 16 14 19 19 C 1.53006 * 113.61763 * 220.02053 * 17 16 14 20 20 N 1.46503 * 109.47225 * 184.99770 * 19 17 16 21 21 C 1.34945 * 126.03403 * 124.99953 * 20 19 17 22 22 C 1.35313 * 107.74741 * 179.97438 * 21 20 19 23 23 C 1.39873 * 107.91862 * 0.02562 * 22 21 20 24 24 N 1.30838 * 108.20284 * 359.73703 * 23 22 21 25 25 C 1.53782 * 87.08322 * 334.56718 * 17 16 14 26 26 C 1.38740 * 119.88595 * 0.28283 * 7 6 5 27 27 C 1.38146 * 119.94197 * 359.97438 * 26 7 6 28 28 H 0.96703 * 113.99810 * 299.99988 * 1 2 3 29 29 H 1.08997 * 109.46673 * 239.99524 * 2 1 3 30 30 H 1.48498 * 110.00176 * 300.00193 * 3 2 1 31 31 H 1.48507 * 110.00293 * 61.31845 * 3 2 1 32 32 H 1.07995 * 119.98059 * 359.97438 * 5 4 2 33 33 H 1.08002 * 120.03108 * 179.74549 * 6 5 4 34 34 H 1.08997 * 109.47463 * 300.00468 * 9 8 7 35 35 H 1.09002 * 109.46662 * 59.99805 * 9 8 7 36 36 H 1.09000 * 109.46982 * 300.00091 * 10 9 8 37 37 H 1.09002 * 109.46720 * 60.00058 * 10 9 8 38 38 H 0.97002 * 119.99890 * 0.02562 * 13 11 10 39 39 H 1.08998 * 113.62048 * 254.53079 * 16 14 13 40 40 H 1.09003 * 113.61534 * 25.44220 * 16 14 13 41 41 H 1.08999 * 109.46868 * 305.00350 * 19 17 16 42 42 H 1.09002 * 109.46872 * 64.99726 * 19 17 16 43 43 H 1.08004 * 126.12860 * 0.02562 * 21 20 19 44 44 H 1.08003 * 126.04525 * 179.97438 * 22 21 20 45 45 H 1.07998 * 125.90145 * 179.97438 * 23 22 21 46 46 H 1.08997 * 113.61481 * 270.88848 * 25 17 16 47 47 H 1.09001 * 113.61221 * 139.97459 * 25 17 16 48 48 H 1.07993 * 120.02463 * 180.02562 * 26 7 6 49 49 H 1.08006 * 119.96944 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7563 0.0000 4 6 1.9312 -0.7105 1.2305 5 6 2.6338 -0.0098 2.1935 6 6 3.0995 -0.6598 3.3200 7 6 2.8522 -2.0144 3.4899 8 8 3.3047 -2.6549 4.5997 9 6 3.0137 -4.0498 4.7078 10 6 3.5992 -4.5934 6.0126 11 6 3.2917 -6.0642 6.1268 12 8 2.6662 -6.6229 5.2506 13 7 3.7126 -6.7592 7.2022 14 6 3.4132 -8.1889 7.3135 15 1 3.2331 -8.6601 6.3472 16 6 4.4069 -8.9593 8.1987 17 6 3.1971 -9.7355 8.7453 18 1 2.9568 -10.6303 8.1710 19 6 3.2649 -9.9950 10.2516 20 7 2.1358 -10.8376 10.6534 21 6 2.2168 -12.0104 11.3159 22 6 0.9570 -12.4704 11.4956 23 6 0.0760 -11.5473 10.9228 24 7 0.7812 -10.5655 10.4223 25 6 2.3425 -8.5138 8.3685 26 6 2.1425 -2.7139 2.5247 27 6 1.6835 -2.0604 1.3975 28 1 -0.3933 0.4417 0.7651 29 1 1.7922 -0.5139 -0.8899 30 1 1.5616 2.4678 -1.2084 31 1 1.5880 2.4585 1.2243 32 1 2.8223 1.0455 2.0629 33 1 3.6518 -0.1131 4.0700 34 1 1.9337 -4.1969 4.7046 35 1 3.4549 -4.5794 3.8634 36 1 4.6792 -4.4464 6.0152 37 1 3.1583 -4.0637 6.8571 38 1 4.2132 -6.3125 7.9028 39 1 5.1046 -9.5786 7.6351 40 1 4.8998 -8.3369 8.9456 41 1 4.1998 -10.5016 10.4913 42 1 3.2185 -9.0462 10.7862 43 1 3.1244 -12.4948 11.6446 44 1 0.6806 -13.3886 11.9927 45 1 -1.0007 -11.6288 10.9011 46 1 2.2712 -7.7696 9.1617 47 1 1.3737 -8.7735 7.9418 48 1 1.9483 -3.7683 2.6549 49 1 1.1312 -2.6047 0.6456 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:36:10 Heat of formation + Delta-G solvation = 29.212659 kcal Electronic energy + Delta-G solvation = -29646.452665 eV Core-core repulsion = 25350.239317 eV Total energy + Delta-G solvation = -4296.213348 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.05703 -41.47185 -41.07925 -39.68231 -39.11727 -37.32246 -35.19171 -33.77630 -33.07358 -32.11409 -31.42250 -30.93906 -28.57876 -26.75278 -26.64673 -25.76331 -24.17061 -23.29650 -22.21774 -21.91771 -21.63214 -21.46921 -20.59962 -19.53599 -18.42373 -18.27726 -17.85609 -17.51107 -17.30618 -16.97346 -16.48827 -16.39639 -16.20731 -16.03460 -15.74601 -15.50105 -15.22298 -14.89773 -14.86218 -14.66135 -14.60749 -14.22510 -14.20032 -13.87971 -13.55043 -13.49580 -13.46353 -13.42514 -13.00976 -12.93466 -12.80798 -12.24446 -12.23162 -12.11350 -11.85996 -11.82146 -11.62406 -11.57349 -11.37622 -11.03900 -10.59565 -10.34011 -10.10353 -10.07021 -9.48640 -9.24497 -4.91175 0.23589 0.30736 1.01228 1.32432 1.47538 1.60213 1.65795 1.72346 1.95783 1.96507 2.48497 2.62684 3.33380 3.43185 3.44680 3.53028 3.65394 3.71793 3.74482 3.80857 3.84799 3.87458 3.98028 4.00398 4.09009 4.20751 4.22981 4.30101 4.32482 4.37963 4.41404 4.58357 4.60398 4.65767 4.69003 4.72327 4.74966 4.77169 4.80663 4.92166 4.97422 4.98358 5.03846 5.16135 5.17113 5.19798 5.29643 5.46420 5.52436 5.67547 5.75607 6.20279 6.28869 6.45369 6.48310 6.79519 7.14634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.082 4.082 3 Si 0.772 3.228 4 C -0.158 4.158 5 C -0.078 4.078 6 C -0.150 4.150 7 C 0.122 3.878 8 O -0.318 6.318 9 C 0.074 3.926 10 C -0.131 4.131 11 C 0.517 3.483 12 O -0.589 6.589 13 N -0.702 5.702 14 C 0.115 3.885 15 H 0.089 0.911 16 C -0.113 4.113 17 C -0.113 4.113 18 H 0.081 0.919 19 C 0.139 3.861 20 N -0.376 5.376 21 C 0.053 3.947 22 C -0.293 4.293 23 C 0.025 3.975 24 N -0.332 5.332 25 C -0.135 4.135 26 C -0.216 4.216 27 C -0.063 4.063 28 H 0.385 0.615 29 H 0.121 0.879 30 H -0.304 1.304 31 H -0.278 1.278 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.421 0.579 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.131 0.869 42 H 0.093 0.907 43 H 0.208 0.792 44 H 0.159 0.841 45 H 0.192 0.808 46 H 0.092 0.908 47 H 0.042 0.958 48 H 0.130 0.870 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.892 -0.469 6.438 10.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.191 4.191 3 Si 0.677 3.323 4 C -0.158 4.158 5 C -0.096 4.096 6 C -0.169 4.169 7 C 0.077 3.923 8 O -0.232 6.232 9 C -0.002 4.002 10 C -0.170 4.170 11 C 0.305 3.695 12 O -0.469 6.469 13 N -0.354 5.354 14 C 0.009 3.991 15 H 0.107 0.893 16 C -0.152 4.152 17 C -0.133 4.133 18 H 0.099 0.901 19 C 0.019 3.981 20 N -0.159 5.159 21 C -0.094 4.094 22 C -0.323 4.323 23 C -0.161 4.161 24 N -0.154 5.154 25 C -0.173 4.173 26 C -0.235 4.235 27 C -0.081 4.081 28 H 0.234 0.766 29 H 0.139 0.861 30 H -0.233 1.233 31 H -0.204 1.204 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.259 0.741 39 H 0.107 0.893 40 H 0.138 0.862 41 H 0.149 0.851 42 H 0.112 0.888 43 H 0.224 0.776 44 H 0.177 0.823 45 H 0.209 0.791 46 H 0.111 0.889 47 H 0.061 0.939 48 H 0.148 0.852 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.549 0.921 4.796 9.846 hybrid contribution -1.700 -1.355 0.867 2.341 sum 6.850 -0.434 5.663 8.898 Atomic orbital electron populations 1.86568 1.18829 1.80447 1.50135 1.25238 0.83232 1.12147 0.98441 0.94035 0.90187 0.71666 0.76416 1.20262 1.02761 0.94745 0.98076 1.21082 0.95845 1.00304 0.92323 1.20643 1.04614 0.91371 1.00229 1.19218 0.94175 0.92718 0.86201 1.85946 1.74056 1.23948 1.39231 1.22420 1.00495 0.78505 0.98788 1.21440 1.05944 0.90807 0.98841 1.20758 0.77865 0.89516 0.81354 1.90744 1.42104 1.72428 1.41672 1.45813 1.56955 1.09713 1.22913 1.22470 0.97314 0.80747 0.98523 0.89299 1.23295 0.95427 0.97797 0.98641 1.22508 0.98157 0.97626 0.94985 0.90075 1.22034 0.85874 0.95700 0.94519 1.49003 1.05336 1.17736 1.43848 1.23207 1.01298 0.88136 0.96724 1.21861 0.92171 1.05019 1.13221 1.24310 1.01452 0.92644 0.97656 1.77323 0.88032 1.24830 1.25259 1.23412 0.97456 0.97719 0.98756 1.21456 1.04387 1.01145 0.96516 1.20934 0.96609 0.94137 0.96455 0.76554 0.86125 1.23276 1.20448 0.82951 0.83032 0.92302 0.91787 0.84981 0.85502 0.74071 0.89252 0.86171 0.85064 0.88847 0.77558 0.82305 0.79108 0.88913 0.93925 0.85214 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.49 12.83 -148.98 -1.91 -4.40 16 2 C -0.08 -0.08 2.80 71.24 0.20 0.12 16 3 Si 0.77 -1.14 29.89 68.60 2.05 0.91 16 4 C -0.16 -0.34 5.35 -19.85 -0.11 -0.44 16 5 C -0.08 -0.01 8.66 22.26 0.19 0.18 16 6 C -0.15 -0.24 9.99 22.37 0.22 -0.01 16 7 C 0.12 0.56 6.69 22.51 0.15 0.71 16 8 O -0.32 -1.09 10.14 -92.33 -0.94 -2.02 16 9 C 0.07 0.13 4.03 71.98 0.29 0.42 16 10 C -0.13 0.56 6.07 29.85 0.18 0.74 16 11 C 0.52 0.64 7.83 87.66 0.69 1.33 16 12 O -0.59 -6.79 15.58 -3.05 -0.05 -6.84 16 13 N -0.70 3.25 5.35 -440.04 -2.36 0.90 16 14 C 0.11 -0.24 4.24 45.52 0.19 -0.05 16 15 H 0.09 0.35 7.46 -2.39 -0.02 0.34 16 16 C -0.11 1.02 7.39 31.12 0.23 1.25 16 17 C -0.11 0.49 3.83 -10.27 -0.04 0.45 16 18 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 19 C 0.14 -0.85 6.35 86.38 0.55 -0.30 16 20 N -0.38 -0.51 3.68 -348.04 -1.28 -1.79 16 21 C 0.05 -0.06 11.45 83.54 0.96 0.90 16 22 C -0.29 -0.51 10.80 21.99 0.24 -0.27 16 23 C 0.02 0.13 12.03 85.24 1.03 1.15 16 24 N -0.33 -2.56 12.42 -57.02 -0.71 -3.27 16 25 C -0.13 0.04 7.43 31.12 0.23 0.27 16 26 C -0.22 -1.11 9.04 22.37 0.20 -0.91 16 27 C -0.06 -0.28 9.68 22.25 0.22 -0.06 16 28 H 0.39 -0.43 8.70 -74.06 -0.64 -1.08 16 29 H 0.12 -0.03 7.96 -2.39 -0.02 -0.05 16 30 H -0.30 -1.95 7.11 99.48 0.71 -1.24 16 31 H -0.28 -0.41 7.00 99.48 0.70 0.29 16 32 H 0.15 -0.69 4.83 -2.91 -0.01 -0.70 16 33 H 0.15 -0.34 8.06 -2.91 -0.02 -0.37 16 34 H 0.06 0.25 7.62 -2.39 -0.02 0.23 16 35 H 0.06 0.22 7.62 -2.39 -0.02 0.20 16 36 H 0.13 -1.17 8.14 -2.39 -0.02 -1.19 16 37 H 0.13 -1.00 8.14 -2.39 -0.02 -1.02 16 38 H 0.42 -5.04 8.73 -92.71 -0.81 -5.85 16 39 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 40 H 0.12 -1.71 8.08 -2.39 -0.02 -1.73 16 41 H 0.13 -1.66 8.07 -2.39 -0.02 -1.68 16 42 H 0.09 -0.69 7.84 -2.39 -0.02 -0.71 16 43 H 0.21 -1.94 8.06 -2.91 -0.02 -1.96 16 44 H 0.16 -0.31 8.06 -2.91 -0.02 -0.34 16 45 H 0.19 0.13 8.06 -2.91 -0.02 0.11 16 46 H 0.09 -0.16 7.90 -2.39 -0.02 -0.18 16 47 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 48 H 0.13 0.61 6.30 -2.91 -0.02 0.59 16 49 H 0.13 0.48 8.06 -2.91 -0.02 0.45 16 Total: 0.00 -27.56 409.75 -0.02 -27.58 By element: Atomic # 1 Polarization: -16.08 SS G_CDS: -0.45 Total: -16.52 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 5.62 Total: 5.47 kcal Atomic # 7 Polarization: 0.18 SS G_CDS: -4.34 Total: -4.17 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -2.90 Total: -13.26 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: 2.05 Total: 0.91 kcal Total: -27.56 -0.02 -27.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.788 kcal (2) G-P(sol) polarization free energy of solvation -27.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds