Wall clock time and date at job start Sun Mar 7 2021 02:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.47334 * 2 1 4 4 C 1.50703 * 109.46787 * 239.99913 * 2 1 3 5 5 C 1.38248 * 119.96728 * 120.00522 * 4 2 1 6 6 C 1.38288 * 120.11039 * 179.97438 * 5 4 2 7 7 C 1.38126 * 120.05556 * 0.03274 * 6 5 4 8 8 C 1.38756 * 119.94242 * 359.97438 * 7 6 5 9 9 O 1.35903 * 120.05254 * 179.97438 * 8 7 6 10 10 C 1.42894 * 117.00302 * 359.97438 * 9 8 7 11 11 C 1.53002 * 109.47182 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46980 * 180.02562 * 11 10 9 13 13 O 1.21283 * 120.00003 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99945 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00274 * 179.97438 * 14 12 11 16 16 H 1.09002 * 112.90477 * 336.24972 * 15 14 12 17 17 C 1.53779 * 113.61581 * 107.50145 * 15 14 12 18 18 C 1.53779 * 87.08402 * 139.98450 * 17 15 14 19 19 H 1.09000 * 113.61527 * 89.11480 * 18 17 15 20 20 C 1.53000 * 113.61731 * 220.02348 * 18 17 15 21 21 N 1.46508 * 109.46810 * 272.49594 * 20 18 17 22 22 C 1.34952 * 126.03711 * 124.99880 * 21 20 18 23 23 C 1.35319 * 107.74187 * 179.97438 * 22 21 20 24 24 C 1.39867 * 107.92287 * 0.02562 * 23 22 21 25 25 N 1.30839 * 108.20086 * 359.74022 * 24 23 22 26 26 C 1.53784 * 113.61569 * 204.99925 * 15 14 12 27 27 C 1.38163 * 119.97615 * 300.29699 * 4 2 1 28 28 H 0.96703 * 114.00171 * 60.00086 * 1 2 3 29 29 H 1.09002 * 109.47431 * 120.00295 * 2 1 3 30 30 H 1.48497 * 109.99682 * 298.68461 * 3 2 1 31 31 H 1.48499 * 109.99684 * 59.99665 * 3 2 1 32 32 H 1.07999 * 119.94637 * 359.97438 * 5 4 2 33 33 H 1.07993 * 119.97634 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.03229 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.47171 * 59.99796 * 10 9 8 36 36 H 1.09000 * 109.46829 * 300.00126 * 10 9 8 37 37 H 1.08991 * 109.47306 * 59.99647 * 11 10 9 38 38 H 1.09001 * 109.46599 * 299.99640 * 11 10 9 39 39 H 0.97009 * 120.00192 * 359.97438 * 14 12 11 40 40 H 1.09006 * 113.61307 * 25.43652 * 17 15 14 41 41 H 1.08999 * 113.69146 * 254.54138 * 17 15 14 42 42 H 1.09003 * 109.47303 * 32.48927 * 20 18 17 43 43 H 1.08993 * 109.47406 * 152.49206 * 20 18 17 44 44 H 1.07992 * 126.12736 * 359.97438 * 22 21 20 45 45 H 1.07999 * 126.03601 * 179.97438 * 23 22 21 46 46 H 1.07994 * 125.89955 * 179.97438 * 24 23 22 47 47 H 1.09004 * 113.61451 * 105.47149 * 26 15 14 48 48 H 1.08994 * 113.61477 * 334.56451 * 26 15 14 49 49 H 1.08007 * 120.02822 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 2.7261 -0.0380 -2.1401 6 6 3.1891 -0.6872 -3.2699 7 6 2.8576 -2.0095 -3.4927 8 6 2.0599 -2.6865 -2.5813 9 8 1.7320 -3.9874 -2.7985 10 6 2.2429 -4.5957 -3.9863 11 6 1.7713 -6.0494 -4.0583 12 6 2.3107 -6.6910 -5.3107 13 8 3.0036 -6.0487 -6.0711 14 7 2.0230 -7.9786 -5.5858 15 6 2.5468 -8.6023 -6.8035 16 1 2.7845 -7.8779 -7.5826 17 6 3.6726 -9.6164 -6.5410 18 6 3.0288 -10.4938 -7.6275 19 1 3.3982 -10.2866 -8.6318 20 6 3.0276 -11.9859 -7.2894 21 7 4.2825 -12.5905 -7.7437 22 6 5.1457 -13.2950 -6.9822 23 6 6.1745 -13.6789 -7.7730 24 6 5.9320 -13.1919 -9.0615 25 7 4.7955 -12.5438 -9.0463 26 6 1.7023 -9.7873 -7.3010 27 6 1.5921 -2.0314 -1.4517 28 1 -0.3934 0.4417 -0.7651 29 1 1.7924 -0.5139 0.8900 30 1 1.5879 2.4585 -1.2242 31 1 1.5615 2.4678 1.2085 32 1 2.9859 0.9960 -1.9680 33 1 3.8101 -0.1600 -3.9788 34 1 3.2190 -2.5160 -4.3754 35 1 3.3325 -4.5671 -3.9694 36 1 1.8787 -4.0523 -4.8582 37 1 0.6819 -6.0775 -4.0754 38 1 2.1352 -6.5929 -3.1864 39 1 1.4690 -8.4925 -4.9775 40 1 3.6383 -10.0588 -5.5454 41 1 4.6638 -9.2491 -6.8071 42 1 2.9321 -12.1141 -6.2111 43 1 2.1889 -12.4710 -7.7886 44 1 5.0351 -13.5133 -5.9304 45 1 7.0318 -14.2583 -7.4635 46 1 6.5705 -13.3305 -9.9214 47 1 1.1023 -9.5567 -8.1814 48 1 1.1295 -10.2764 -6.5133 49 1 0.9669 -2.5548 -0.7434 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_4549614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:36:14 Heat of formation + Delta-G solvation = 28.795917 kcal Electronic energy + Delta-G solvation = -29682.024013 eV Core-core repulsion = 25385.792594 eV Total energy + Delta-G solvation = -4296.231419 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.06949 -41.47716 -41.08987 -39.69158 -39.08489 -37.39631 -35.19804 -33.76892 -33.02781 -32.49323 -31.01465 -30.81770 -28.55649 -27.06877 -26.76986 -25.74036 -23.81412 -23.67137 -22.14762 -22.03746 -21.55754 -21.51246 -20.41723 -19.38120 -18.32488 -18.19949 -17.79412 -17.51368 -17.23409 -17.14387 -16.88222 -16.34701 -16.29933 -16.14929 -15.86664 -15.57198 -15.24817 -14.93449 -14.71318 -14.56125 -14.42329 -14.33460 -14.13880 -13.93671 -13.66901 -13.49954 -13.34472 -13.24418 -13.01020 -12.89622 -12.81127 -12.43267 -12.31134 -12.00794 -11.88445 -11.83922 -11.59164 -11.56460 -11.47896 -11.05815 -10.68978 -10.33481 -10.12467 -9.95331 -9.47653 -9.29484 -4.90560 0.17736 0.37347 1.00628 1.29278 1.46975 1.62035 1.65412 1.71466 1.95536 1.96439 2.47993 2.64113 3.36848 3.39870 3.47927 3.51453 3.53950 3.62820 3.72891 3.82575 3.87305 3.91347 3.95711 4.07475 4.08921 4.18285 4.21958 4.26182 4.32675 4.39152 4.50094 4.54634 4.59230 4.62743 4.65405 4.66286 4.74526 4.75027 4.80058 4.90610 4.95506 4.96495 5.01144 5.15886 5.20345 5.24209 5.36178 5.41992 5.51546 5.68230 5.75235 6.19788 6.30488 6.45047 6.46349 6.78381 7.14153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.086 4.086 3 Si 0.774 3.226 4 C -0.082 4.082 5 C -0.156 4.156 6 C -0.076 4.076 7 C -0.212 4.212 8 C 0.116 3.884 9 O -0.323 6.323 10 C 0.074 3.926 11 C -0.132 4.132 12 C 0.519 3.481 13 O -0.587 6.587 14 N -0.702 5.702 15 C 0.118 3.882 16 H 0.087 0.913 17 C -0.140 4.140 18 C -0.117 4.117 19 H 0.079 0.921 20 C 0.140 3.860 21 N -0.375 5.375 22 C 0.054 3.946 23 C -0.294 4.294 24 C 0.028 3.972 25 N -0.340 5.340 26 C -0.117 4.117 27 C -0.140 4.140 28 H 0.386 0.614 29 H 0.126 0.874 30 H -0.282 1.282 31 H -0.302 1.302 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.135 0.865 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.422 0.578 40 H 0.108 0.892 41 H 0.045 0.955 42 H 0.131 0.869 43 H 0.092 0.908 44 H 0.207 0.793 45 H 0.160 0.840 46 H 0.194 0.806 47 H 0.080 0.920 48 H 0.123 0.877 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 -3.894 3.481 5.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.194 4.194 3 Si 0.679 3.321 4 C -0.082 4.082 5 C -0.174 4.174 6 C -0.094 4.094 7 C -0.230 4.230 8 C 0.071 3.929 9 O -0.237 6.237 10 C -0.002 4.002 11 C -0.171 4.171 12 C 0.307 3.693 13 O -0.468 6.468 14 N -0.353 5.353 15 C 0.013 3.987 16 H 0.105 0.895 17 C -0.179 4.179 18 C -0.137 4.137 19 H 0.097 0.903 20 C 0.020 3.980 21 N -0.157 5.157 22 C -0.092 4.092 23 C -0.323 4.323 24 C -0.157 4.157 25 N -0.162 5.162 26 C -0.156 4.156 27 C -0.159 4.159 28 H 0.235 0.765 29 H 0.144 0.856 30 H -0.209 1.209 31 H -0.230 1.230 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.153 0.847 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.260 0.740 40 H 0.126 0.874 41 H 0.064 0.936 42 H 0.149 0.851 43 H 0.110 0.890 44 H 0.224 0.776 45 H 0.178 0.822 46 H 0.211 0.789 47 H 0.099 0.901 48 H 0.141 0.859 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.212 -2.352 2.964 3.973 hybrid contribution -0.347 -0.845 -0.414 1.003 sum -1.559 -3.197 2.550 4.376 Atomic orbital electron populations 1.86570 1.18434 1.80458 1.50137 1.25339 0.83520 1.12183 0.98367 0.93912 0.90333 0.71424 0.76410 1.20176 0.97621 0.93531 0.96874 1.21173 1.00290 1.00852 0.95081 1.21241 0.97645 0.93392 0.97091 1.21550 1.03232 0.97120 1.01141 1.19145 0.95246 0.83520 0.94958 1.85949 1.71411 1.22807 1.43576 1.22438 0.98930 0.93365 0.85465 1.21443 1.04949 0.93850 0.96897 1.20711 0.79320 0.82306 0.87012 1.90744 1.40313 1.63987 1.51731 1.45797 1.53169 1.11478 1.24891 1.22380 0.95641 0.93238 0.87487 0.89478 1.23539 0.97731 0.96613 0.99972 1.22540 0.98528 0.93093 0.99548 0.90274 1.22028 0.82037 0.91953 1.01999 1.48970 1.19164 1.41531 1.06067 1.23187 0.90830 0.95540 0.99689 1.21870 1.04038 1.12821 0.93620 1.24305 0.94767 0.96857 0.99766 1.77266 1.13742 1.25289 0.99934 1.23317 0.95499 0.93861 1.02892 1.20317 1.03643 0.94642 0.97281 0.76453 0.85578 1.20864 1.22991 0.83461 0.83042 0.84732 0.91744 0.91929 0.85452 0.85338 0.73983 0.87361 0.93629 0.85093 0.88969 0.77602 0.82246 0.78909 0.90119 0.85897 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.93 12.76 -148.98 -1.90 -3.83 16 2 C -0.09 -0.03 2.82 71.24 0.20 0.17 16 3 Si 0.77 -1.39 29.79 68.60 2.04 0.65 16 4 C -0.08 -0.15 5.39 -19.88 -0.11 -0.26 16 5 C -0.16 0.02 8.67 22.28 0.19 0.21 16 6 C -0.08 -0.04 10.04 22.26 0.22 0.19 16 7 C -0.21 -0.71 9.04 22.37 0.20 -0.50 16 8 C 0.12 0.62 6.69 22.51 0.15 0.77 16 9 O -0.32 -1.41 10.14 -92.46 -0.94 -2.35 16 10 C 0.07 0.10 4.03 71.98 0.29 0.39 16 11 C -0.13 0.61 6.07 29.85 0.18 0.80 16 12 C 0.52 0.09 7.83 87.66 0.69 0.78 16 13 O -0.59 -6.03 15.58 -3.04 -0.05 -6.07 16 14 N -0.70 4.13 5.35 -440.04 -2.36 1.77 16 15 C 0.12 -0.36 4.24 45.52 0.19 -0.17 16 16 H 0.09 0.32 7.47 -2.39 -0.02 0.30 16 17 C -0.14 0.48 7.43 31.12 0.23 0.71 16 18 C -0.12 0.47 3.87 -10.27 -0.04 0.43 16 19 H 0.08 0.21 7.97 -2.39 -0.02 0.19 16 20 C 0.14 -0.81 6.35 86.38 0.55 -0.27 16 21 N -0.37 -0.58 3.68 -348.05 -1.28 -1.86 16 22 C 0.05 -0.06 11.45 83.54 0.96 0.90 16 23 C -0.29 -0.51 10.80 21.99 0.24 -0.27 16 24 C 0.03 0.14 12.03 85.24 1.02 1.17 16 25 N -0.34 -2.73 12.28 -57.03 -0.70 -3.43 16 26 C -0.12 0.97 7.39 31.12 0.23 1.20 16 27 C -0.14 -0.66 9.55 22.36 0.21 -0.45 16 28 H 0.39 -0.77 8.70 -74.05 -0.64 -1.41 16 29 H 0.13 -0.16 7.96 -2.39 -0.02 -0.18 16 30 H -0.28 -0.54 7.11 99.48 0.71 0.17 16 31 H -0.30 -1.73 7.11 99.48 0.71 -1.02 16 32 H 0.15 -0.68 4.87 -2.91 -0.01 -0.69 16 33 H 0.15 -0.65 8.06 -2.91 -0.02 -0.67 16 34 H 0.13 0.29 6.30 -2.91 -0.02 0.27 16 35 H 0.06 0.18 7.62 -2.38 -0.02 0.16 16 36 H 0.06 0.19 7.62 -2.39 -0.02 0.17 16 37 H 0.13 -1.07 8.14 -2.39 -0.02 -1.09 16 38 H 0.13 -1.11 8.14 -2.39 -0.02 -1.13 16 39 H 0.42 -5.61 8.73 -92.70 -0.81 -6.42 16 40 H 0.11 -0.85 7.90 -2.38 -0.02 -0.87 16 41 H 0.04 0.12 8.14 -2.39 -0.02 0.11 16 42 H 0.13 -1.68 7.77 -2.39 -0.02 -1.70 16 43 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 44 H 0.21 -1.94 8.06 -2.91 -0.02 -1.96 16 45 H 0.16 -0.33 8.06 -2.91 -0.02 -0.35 16 46 H 0.19 0.06 8.06 -2.91 -0.02 0.03 16 47 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 48 H 0.12 -1.75 8.08 -2.39 -0.02 -1.77 16 49 H 0.13 0.64 8.06 -2.91 -0.02 0.62 16 Total: 0.00 -27.79 409.45 0.00 -27.78 By element: Atomic # 1 Polarization: -18.01 SS G_CDS: -0.44 Total: -18.44 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 5.62 Total: 5.78 kcal Atomic # 7 Polarization: 0.81 SS G_CDS: -4.34 Total: -3.52 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -2.89 Total: -12.25 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: 2.04 Total: 0.65 kcal Total: -27.79 0.00 -27.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_4549614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.579 kcal (2) G-P(sol) polarization free energy of solvation -27.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds