Wall clock time and date at job start Sun Mar 7 2021 02:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86302 * 109.47307 * 2 1 4 4 C 1.50700 * 109.46937 * 239.99764 * 2 1 3 5 5 C 1.38247 * 119.97104 * 120.02262 * 4 2 1 6 6 C 1.38286 * 120.11216 * 179.97438 * 5 4 2 7 7 C 1.38126 * 120.05559 * 359.68333 * 6 5 4 8 8 C 1.38751 * 119.94015 * 0.59586 * 7 6 5 9 9 O 1.35906 * 120.05323 * 179.69957 * 8 7 6 10 10 C 1.42888 * 117.00083 * 359.72545 * 9 8 7 11 11 C 1.53003 * 109.47394 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47417 * 180.02562 * 11 10 9 13 13 C 1.50691 * 109.47285 * 179.97438 * 12 11 10 14 14 O 1.21289 * 120.00113 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00316 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00122 * 179.97438 * 15 13 12 17 17 H 1.08993 * 112.90929 * 336.25213 * 16 15 13 18 18 C 1.53962 * 113.66387 * 107.55425 * 16 15 13 19 19 C 1.53782 * 87.11063 * 139.88885 * 18 16 15 20 20 H 1.08997 * 113.61225 * 89.18406 * 19 18 16 21 21 C 1.53003 * 113.61259 * 220.08801 * 19 18 16 22 22 N 1.46493 * 109.47111 * 272.50057 * 21 19 18 23 23 C 1.34944 * 126.04086 * 124.72110 * 22 21 19 24 24 C 1.35315 * 107.74997 * 179.83916 * 23 22 21 25 25 C 1.39871 * 107.91952 * 0.41783 * 24 23 22 26 26 N 1.30837 * 108.20184 * 359.73966 * 25 24 23 27 27 C 1.53781 * 87.08260 * 334.63747 * 19 18 16 28 28 C 1.38163 * 119.97272 * 300.00250 * 4 2 1 29 29 H 0.96694 * 114.00090 * 59.99487 * 1 2 3 30 30 H 1.09004 * 109.46697 * 120.00145 * 2 1 3 31 31 H 1.48498 * 110.00026 * 298.68344 * 3 2 1 32 32 H 1.48503 * 109.99697 * 60.00238 * 3 2 1 33 33 H 1.08003 * 119.93917 * 359.97438 * 5 4 2 34 34 H 1.07997 * 119.96893 * 179.97438 * 6 5 4 35 35 H 1.07996 * 120.02665 * 180.31500 * 7 6 5 36 36 H 1.09000 * 109.47613 * 59.99821 * 10 9 8 37 37 H 1.09007 * 109.47108 * 299.99899 * 10 9 8 38 38 H 1.08992 * 109.47044 * 59.99501 * 11 10 9 39 39 H 1.09005 * 109.46409 * 299.99368 * 11 10 9 40 40 H 1.09002 * 109.47217 * 59.99217 * 12 11 10 41 41 H 1.09005 * 109.46590 * 299.99835 * 12 11 10 42 42 H 0.97002 * 120.00080 * 0.02562 * 15 13 12 43 43 H 1.08997 * 113.53543 * 25.33559 * 18 16 15 44 44 H 1.08994 * 113.66446 * 254.45762 * 18 16 15 45 45 H 1.08994 * 109.47052 * 32.49864 * 21 19 18 46 46 H 1.09002 * 109.46569 * 152.49796 * 21 19 18 47 47 H 1.08002 * 126.12644 * 359.97438 * 23 22 21 48 48 H 1.08003 * 126.04340 * 180.15954 * 24 23 22 49 49 H 1.07999 * 125.89929 * 179.71627 * 25 24 23 50 50 H 1.09002 * 113.61445 * 139.98212 * 27 19 18 51 51 H 1.09002 * 113.61408 * 270.79943 * 27 19 18 52 52 H 1.07999 * 120.03064 * 0.04568 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7265 -0.0382 -2.1399 6 6 3.1894 -0.6875 -3.2697 7 6 2.8636 -2.0117 -3.4889 8 6 2.0610 -2.6870 -2.5806 9 8 1.7340 -3.9882 -2.7971 10 6 2.2466 -4.5971 -3.9838 11 6 1.7759 -6.0511 -4.0553 12 6 2.3253 -6.7033 -5.3256 13 6 1.8622 -8.1356 -5.3957 14 8 1.1620 -8.5902 -4.5159 15 7 2.2260 -8.9114 -6.4359 16 6 1.7762 -10.3040 -6.5037 17 1 1.5267 -10.7173 -5.5265 18 6 0.6967 -10.5534 -7.5728 19 6 1.4232 -11.8718 -7.8872 20 1 1.0770 -12.7145 -7.2888 21 6 1.4936 -12.1915 -9.3818 22 7 0.2893 -12.9235 -9.7818 23 6 -0.5625 -12.5723 -10.7677 24 6 -1.5392 -13.5072 -10.8216 25 6 -1.2806 -14.4574 -9.8283 26 7 -0.1847 -14.1086 -9.2044 27 6 2.6978 -11.2091 -7.3383 28 6 1.5971 -2.0332 -1.4485 29 1 -0.3933 0.4417 -0.7650 30 1 1.7923 -0.5139 0.8900 31 1 1.5880 2.4586 -1.2242 32 1 1.5616 2.4678 1.2086 33 1 2.9865 0.9958 -1.9676 34 1 3.8101 -0.1600 -3.9788 35 1 3.2296 -2.5198 -4.3688 36 1 3.3361 -4.5680 -3.9657 37 1 1.8832 -4.0546 -4.8567 38 1 0.6865 -6.0798 -4.0736 39 1 2.1391 -6.5938 -3.1825 40 1 3.4148 -6.6745 -5.3068 41 1 1.9626 -6.1606 -6.1986 42 1 2.7863 -8.5479 -7.1394 43 1 0.7215 -9.8350 -8.3922 44 1 -0.3027 -10.6931 -7.1611 45 1 1.5597 -11.2632 -9.9491 46 1 2.3736 -12.8029 -9.5814 47 1 -0.4784 -11.7021 -11.4019 48 1 -2.3736 -13.5158 -11.5073 49 1 -1.8818 -15.3284 -9.6132 50 1 3.3137 -11.8781 -6.7373 51 1 3.2703 -10.6712 -8.0940 52 1 0.9756 -2.5579 -0.7380 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_4549616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:36:19 Heat of formation + Delta-G solvation = 21.377648 kcal Electronic energy + Delta-G solvation = -31221.236860 eV Core-core repulsion = 26769.146141 eV Total energy + Delta-G solvation = -4452.090719 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.188 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.07005 -41.33928 -41.12938 -39.63874 -39.17623 -37.42671 -35.15737 -34.90185 -33.48001 -32.46838 -31.25097 -30.98364 -28.98732 -27.94372 -26.83990 -26.75498 -24.51826 -23.68376 -23.12404 -22.04752 -21.89002 -21.54337 -21.48515 -20.40149 -19.22898 -18.31084 -18.13487 -17.91912 -17.47313 -17.28832 -17.10426 -16.84499 -16.46562 -16.34256 -16.19099 -15.99831 -15.52754 -15.33684 -14.97183 -14.78755 -14.72873 -14.51638 -14.23863 -14.13523 -14.10917 -13.68302 -13.50016 -13.38742 -13.33544 -13.26300 -13.09067 -12.85266 -12.73453 -12.33504 -12.31212 -12.28142 -11.94914 -11.87913 -11.61549 -11.56583 -11.55927 -11.47676 -10.94750 -10.68832 -10.33864 -10.07765 -9.91955 -9.48060 -9.24339 -4.91338 0.21851 0.41388 1.00172 1.29103 1.57469 1.61734 1.67458 1.90962 1.94943 1.99816 2.39535 2.68173 3.37360 3.38971 3.48080 3.51263 3.62001 3.66388 3.74850 3.85001 3.87843 3.91406 3.97607 4.08315 4.11179 4.15002 4.22488 4.25735 4.31894 4.36212 4.41604 4.45431 4.50217 4.55368 4.59582 4.64660 4.65978 4.69454 4.75547 4.80677 4.90207 4.95445 4.99480 4.99718 5.01661 5.14786 5.15583 5.23759 5.29518 5.39194 5.45742 5.55203 5.74531 5.75350 6.19713 6.43469 6.45302 6.54179 6.77796 7.25522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.093 4.093 3 Si 0.783 3.217 4 C -0.082 4.082 5 C -0.160 4.160 6 C -0.072 4.072 7 C -0.205 4.205 8 C 0.115 3.885 9 O -0.341 6.341 10 C 0.058 3.942 11 C -0.103 4.103 12 C -0.126 4.126 13 C 0.506 3.494 14 O -0.595 6.595 15 N -0.704 5.704 16 C 0.116 3.884 17 H 0.081 0.919 18 C -0.140 4.140 19 C -0.118 4.118 20 H 0.077 0.923 21 C 0.140 3.860 22 N -0.375 5.375 23 C 0.055 3.945 24 C -0.295 4.295 25 C 0.028 3.972 26 N -0.341 5.341 27 C -0.115 4.115 28 C -0.153 4.153 29 H 0.386 0.614 30 H 0.120 0.880 31 H -0.277 1.277 32 H -0.304 1.304 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.155 0.845 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.422 0.578 43 H 0.109 0.891 44 H 0.041 0.959 45 H 0.132 0.868 46 H 0.093 0.907 47 H 0.208 0.792 48 H 0.160 0.840 49 H 0.194 0.806 50 H 0.079 0.921 51 H 0.125 0.875 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.675 4.998 -10.165 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.201 4.201 3 Si 0.688 3.312 4 C -0.083 4.083 5 C -0.177 4.177 6 C -0.090 4.090 7 C -0.223 4.223 8 C 0.070 3.930 9 O -0.255 6.255 10 C -0.016 4.016 11 C -0.142 4.142 12 C -0.165 4.165 13 C 0.295 3.705 14 O -0.475 6.475 15 N -0.356 5.356 16 C 0.010 3.990 17 H 0.099 0.901 18 C -0.179 4.179 19 C -0.138 4.138 20 H 0.095 0.905 21 C 0.020 3.980 22 N -0.158 5.158 23 C -0.092 4.092 24 C -0.324 4.324 25 C -0.157 4.157 26 N -0.163 5.163 27 C -0.154 4.154 28 C -0.172 4.172 29 H 0.235 0.765 30 H 0.138 0.862 31 H -0.204 1.204 32 H -0.233 1.233 33 H 0.166 0.834 34 H 0.178 0.822 35 H 0.172 0.828 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.260 0.740 43 H 0.128 0.872 44 H 0.060 0.940 45 H 0.150 0.850 46 H 0.111 0.889 47 H 0.225 0.775 48 H 0.178 0.822 49 H 0.210 0.790 50 H 0.097 0.903 51 H 0.143 0.857 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.921 4.822 -7.932 12.875 hybrid contribution -2.133 -0.520 -0.951 2.393 sum 6.788 4.302 -8.883 11.979 Atomic orbital electron populations 1.86574 1.18684 1.80540 1.50119 1.25453 0.83438 1.12773 0.98451 0.93892 0.90076 0.70821 0.76450 1.20138 0.97867 0.93321 0.96966 1.21191 1.00284 1.00924 0.95320 1.21316 0.97412 0.93478 0.96782 1.21611 1.02559 0.96839 1.01304 1.19208 0.95258 0.83553 0.94955 1.86055 1.71709 1.22926 1.44830 1.22994 0.99777 0.92992 0.85827 1.21165 1.01410 0.93138 0.98445 1.21539 1.04764 0.90369 0.99843 1.21304 0.78946 0.89451 0.80827 1.90747 1.39935 1.76197 1.40655 1.45837 1.53269 1.11378 1.25130 1.22354 0.96384 0.81860 0.98381 0.90072 1.23567 0.97611 0.97154 0.99521 1.22540 0.98616 0.97130 0.95495 0.90500 1.22030 0.83785 0.96905 0.95236 1.48975 1.21642 1.18741 1.26397 1.23191 0.91161 1.01376 0.93454 1.21871 1.05193 0.98723 1.06593 1.24305 0.95036 1.01043 0.95337 1.77271 1.15221 1.00622 1.23206 1.23299 0.95483 0.97350 0.99247 1.20321 1.04220 0.94948 0.97716 0.76481 0.86225 1.20371 1.23295 0.83436 0.82223 0.82777 0.89571 0.89824 0.92527 0.92345 0.85097 0.85222 0.73968 0.87230 0.94009 0.84970 0.88883 0.77511 0.82236 0.78951 0.90254 0.85685 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.00 12.77 -148.98 -1.90 -4.90 16 2 C -0.09 -0.16 2.82 71.24 0.20 0.04 16 3 Si 0.78 -1.36 29.79 68.60 2.04 0.68 16 4 C -0.08 -0.20 5.39 -19.88 -0.11 -0.30 16 5 C -0.16 0.25 8.67 22.28 0.19 0.44 16 6 C -0.07 0.23 10.04 22.25 0.22 0.46 16 7 C -0.20 0.26 9.04 22.37 0.20 0.46 16 8 C 0.12 0.54 6.69 22.51 0.15 0.69 16 9 O -0.34 -2.07 10.14 -92.50 -0.94 -3.00 16 10 C 0.06 -0.16 4.74 71.98 0.34 0.18 16 11 C -0.10 0.01 4.87 30.60 0.15 0.16 16 12 C -0.13 0.95 5.70 29.85 0.17 1.12 16 13 C 0.51 0.37 7.83 87.65 0.69 1.06 16 14 O -0.59 -7.77 15.58 -3.06 -0.05 -7.82 16 15 N -0.70 4.04 5.36 -439.75 -2.36 1.68 16 16 C 0.12 -0.24 4.25 45.58 0.19 -0.04 16 17 H 0.08 0.46 7.47 -2.39 -0.02 0.44 16 18 C -0.14 0.36 7.44 31.18 0.23 0.59 16 19 C -0.12 0.39 3.87 -10.27 -0.04 0.35 16 20 H 0.08 0.28 7.96 -2.39 -0.02 0.26 16 21 C 0.14 -0.79 6.35 86.38 0.55 -0.25 16 22 N -0.38 -0.71 3.68 -348.08 -1.28 -1.99 16 23 C 0.05 -0.05 11.45 83.54 0.96 0.91 16 24 C -0.29 -0.60 10.80 21.99 0.24 -0.36 16 25 C 0.03 0.15 12.03 85.24 1.03 1.18 16 26 N -0.34 -2.91 12.27 -57.02 -0.70 -3.61 16 27 C -0.12 0.91 7.39 31.12 0.23 1.14 16 28 C -0.15 -0.99 9.55 22.37 0.21 -0.77 16 29 H 0.39 -0.21 8.70 -74.06 -0.64 -0.86 16 30 H 0.12 0.11 7.96 -2.38 -0.02 0.09 16 31 H -0.28 -0.32 7.11 99.48 0.71 0.39 16 32 H -0.30 -1.88 7.11 99.48 0.71 -1.17 16 33 H 0.15 -0.90 4.87 -2.91 -0.01 -0.91 16 34 H 0.16 -1.50 8.06 -2.91 -0.02 -1.52 16 35 H 0.15 -1.09 6.30 -2.91 -0.02 -1.11 16 36 H 0.09 -0.62 7.65 -2.39 -0.02 -0.64 16 37 H 0.08 -0.58 7.67 -2.38 -0.02 -0.59 16 38 H 0.06 0.29 8.10 -2.39 -0.02 0.27 16 39 H 0.06 0.28 8.10 -2.38 -0.02 0.26 16 40 H 0.13 -1.77 8.14 -2.39 -0.02 -1.79 16 41 H 0.13 -1.74 8.14 -2.38 -0.02 -1.76 16 42 H 0.42 -5.95 8.73 -92.71 -0.81 -6.76 16 43 H 0.11 -0.82 7.90 -2.39 -0.02 -0.84 16 44 H 0.04 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.13 -1.71 7.77 -2.39 -0.02 -1.73 16 46 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 47 H 0.21 -1.95 8.06 -2.91 -0.02 -1.97 16 48 H 0.16 -0.29 8.06 -2.91 -0.02 -0.31 16 49 H 0.19 0.16 8.06 -2.91 -0.02 0.13 16 50 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 51 H 0.12 -1.81 8.07 -2.39 -0.02 -1.83 16 52 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16 Total: 0.00 -33.99 430.95 0.15 -33.84 By element: Atomic # 1 Polarization: -21.46 SS G_CDS: -0.47 Total: -21.93 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 5.81 Total: 7.06 kcal Atomic # 7 Polarization: 0.42 SS G_CDS: -4.34 Total: -3.92 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -2.89 Total: -15.73 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: 2.04 Total: 0.68 kcal Total: -33.99 0.15 -33.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_4549616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.217 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds