Wall clock time and date at job start Sun Mar 7 2021 02:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46739 * 2 1 4 4 C 1.50693 * 109.47458 * 119.99833 * 2 1 3 5 5 C 1.38264 * 119.94660 * 64.99852 * 4 2 1 6 6 C 1.38145 * 120.06113 * 180.02562 * 5 4 2 7 7 C 1.38732 * 119.94222 * 0.02562 * 6 5 4 8 8 O 1.35893 * 120.06020 * 180.02562 * 7 6 5 9 9 C 1.42892 * 117.00538 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47499 * 179.97438 * 9 8 7 11 11 C 1.36417 * 125.80174 * 89.99446 * 10 9 8 12 12 C 1.47381 * 127.19390 * 0.02562 * 11 10 9 13 13 O 1.21613 * 119.99816 * 359.70203 * 12 11 10 14 14 N 1.34777 * 120.00222 * 179.70704 * 12 11 10 15 15 C 1.46498 * 119.99828 * 180.27565 * 14 12 11 16 16 H 1.09000 * 112.84813 * 334.38493 * 15 14 12 17 17 C 1.53783 * 113.61758 * 105.58441 * 15 14 12 18 18 C 1.53953 * 87.01967 * 139.94777 * 17 15 14 19 19 H 1.09008 * 113.53404 * 89.18891 * 18 17 15 20 20 C 1.52998 * 113.74441 * 220.05426 * 18 17 15 21 21 N 1.46494 * 109.47385 * 272.59992 * 20 18 17 22 22 C 1.34953 * 126.03832 * 124.99796 * 21 20 18 23 23 C 1.35308 * 107.74912 * 179.97438 * 22 21 20 24 24 C 1.39868 * 107.92156 * 359.97438 * 23 22 21 25 25 N 1.30844 * 108.19992 * 359.74130 * 24 23 22 26 26 C 1.53779 * 113.61166 * 203.19166 * 15 14 12 27 27 C 1.47023 * 105.61634 * 179.75564 * 11 10 9 28 28 C 1.34177 * 105.95272 * 0.22857 * 27 11 10 29 29 O 1.33655 * 125.80292 * 270.14380 * 10 9 8 30 30 C 1.38734 * 119.88782 * 0.27322 * 7 6 5 31 31 C 1.38143 * 119.94473 * 359.47227 * 30 7 6 32 32 H 0.96700 * 114.00423 * 299.99186 * 1 2 3 33 33 H 1.08994 * 109.47069 * 240.00277 * 2 1 3 34 34 H 1.48500 * 109.99607 * 300.00088 * 3 2 1 35 35 H 1.48498 * 110.00021 * 61.31774 * 3 2 1 36 36 H 1.08009 * 119.96813 * 359.97438 * 5 4 2 37 37 H 1.07996 * 120.02956 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47224 * 59.99853 * 9 8 7 39 39 H 1.09008 * 109.47151 * 299.99777 * 9 8 7 40 40 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 41 41 H 1.08995 * 113.61864 * 254.52969 * 17 15 14 42 42 H 1.08999 * 113.60888 * 25.43011 * 17 15 14 43 43 H 1.09007 * 109.46928 * 32.60378 * 20 18 17 44 44 H 1.08996 * 109.46942 * 152.59879 * 20 18 17 45 45 H 1.08003 * 126.12198 * 0.02562 * 22 21 20 46 46 H 1.07996 * 126.04022 * 180.02562 * 23 22 21 47 47 H 1.08000 * 125.90322 * 179.97438 * 24 23 22 48 48 H 1.08996 * 113.61592 * 334.56671 * 26 15 14 49 49 H 1.09000 * 113.61393 * 105.38671 * 26 15 14 50 50 H 1.08004 * 127.02181 * 180.24688 * 27 11 10 51 51 H 1.07998 * 125.43940 * 179.97438 * 28 27 11 52 52 H 1.08001 * 120.03032 * 179.72264 * 30 7 6 53 53 H 1.08000 * 119.97550 * 180.22987 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 1.2304 5 6 1.6841 -2.0604 1.3973 6 6 2.1431 -2.7138 2.5246 7 6 2.8523 -2.0141 3.4900 8 8 3.3054 -2.6546 4.5996 9 6 4.0276 -1.8710 5.5516 10 6 4.4467 -2.7440 6.7063 11 6 5.6146 -3.4434 6.7951 12 6 6.6999 -3.4952 5.7995 13 8 6.6020 -2.8713 4.7602 14 7 7.8010 -4.2342 6.0406 15 6 8.8824 -4.2809 5.0535 16 1 8.5384 -4.0798 4.0389 17 6 10.1209 -3.4636 5.4573 18 6 10.9679 -4.6158 4.8870 19 1 11.1952 -4.5054 3.8266 20 6 12.2023 -4.9477 5.7278 21 7 13.3219 -4.1023 5.3065 22 6 14.0537 -3.2975 6.1053 23 6 14.9874 -2.6913 5.3362 24 6 14.8211 -3.1414 4.0224 25 7 13.8268 -3.9917 4.0045 26 6 9.7665 -5.5340 5.1672 27 6 5.5672 -4.1293 8.0947 28 6 4.3947 -3.7870 8.6499 29 8 3.7361 -2.9669 7.8161 30 6 3.0938 -0.6581 3.3232 31 6 2.6372 -0.0105 2.1916 32 1 -0.3934 0.4416 0.7651 33 1 1.7923 -0.5138 -0.8900 34 1 1.5613 2.4679 -1.2085 35 1 1.5877 2.4586 1.2242 36 1 1.1309 -2.6045 0.6460 37 1 1.9494 -3.7683 2.6546 38 1 3.3903 -1.0661 5.9178 39 1 4.9122 -1.4467 5.0767 40 1 7.8792 -4.7316 6.8697 41 1 10.2260 -2.5290 4.9064 42 1 10.2271 -3.3353 6.5345 43 1 11.9849 -4.7650 6.7802 44 1 12.4659 -5.9960 5.5880 45 1 13.9187 -3.1623 7.1683 46 1 15.7304 -1.9854 5.6767 47 1 15.4136 -2.8419 3.1705 48 1 9.7757 -5.9728 6.1648 49 1 9.5849 -6.2691 4.3831 50 1 6.3222 -4.7763 8.5164 51 1 4.0376 -4.1186 9.6137 52 1 3.6418 -0.1102 4.0755 53 1 2.8281 1.0443 2.0595 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_4549634.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:36:35 Heat of formation + Delta-G solvation = 57.947588 kcal Electronic energy + Delta-G solvation = -37311.414801 eV Core-core repulsion = 32313.086879 eV Total energy + Delta-G solvation = -4998.327922 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.172 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.72678 -42.04359 -41.33431 -41.06470 -39.47612 -39.23088 -37.33049 -35.25517 -34.19230 -33.33721 -32.81550 -32.01517 -31.42403 -30.96666 -28.72617 -27.82619 -26.76459 -26.23983 -25.29259 -23.88812 -23.55280 -22.44928 -22.17081 -21.99354 -21.49125 -21.20250 -20.31287 -19.54397 -19.12569 -18.38717 -18.26178 -17.51958 -17.29683 -17.22446 -16.99592 -16.75691 -16.42874 -16.31259 -16.21820 -16.09046 -15.80280 -15.66722 -15.50098 -15.12771 -14.77635 -14.64188 -14.50436 -14.41400 -14.21682 -14.16157 -13.90241 -13.65269 -13.64312 -13.49240 -13.48526 -13.31293 -13.13613 -12.86591 -12.37149 -12.30564 -12.16087 -12.08797 -11.87893 -11.64341 -11.54700 -11.46373 -11.13416 -10.97200 -10.60653 -10.31826 -10.14398 -10.08486 -9.83290 -9.45851 -9.28656 -4.92910 -0.05301 0.23284 0.26290 1.02595 1.03263 1.30428 1.50383 1.57163 1.68950 1.92851 1.97406 2.04233 2.13049 2.44963 2.60361 3.33172 3.36849 3.42734 3.49318 3.52504 3.60024 3.66050 3.69260 3.75534 3.78864 3.87453 3.91454 3.93135 4.09103 4.10534 4.19004 4.25886 4.33704 4.39062 4.44902 4.51275 4.52185 4.56431 4.65767 4.66319 4.67357 4.76524 4.79951 4.82265 4.92073 4.92384 4.96681 5.02140 5.11034 5.17479 5.20446 5.22010 5.27514 5.44109 5.51645 5.65456 5.77086 5.88250 6.21616 6.22448 6.45378 6.48491 6.80366 7.11287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.077 4.077 3 Si 0.762 3.238 4 C -0.157 4.157 5 C -0.057 4.057 6 C -0.163 4.163 7 C 0.124 3.876 8 O -0.322 6.322 9 C 0.135 3.865 10 C 0.038 3.962 11 C -0.222 4.222 12 C 0.582 3.418 13 O -0.574 6.574 14 N -0.694 5.694 15 C 0.119 3.881 16 H 0.088 0.912 17 C -0.138 4.138 18 C -0.115 4.115 19 H 0.080 0.920 20 C 0.140 3.860 21 N -0.375 5.375 22 C 0.054 3.946 23 C -0.294 4.294 24 C 0.028 3.972 25 N -0.339 5.339 26 C -0.117 4.117 27 C -0.194 4.194 28 C -0.013 4.013 29 O -0.179 6.179 30 C -0.206 4.206 31 C -0.078 4.078 32 H 0.386 0.614 33 H 0.124 0.876 34 H -0.301 1.301 35 H -0.279 1.279 36 H 0.141 0.859 37 H 0.134 0.866 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.418 0.582 41 H 0.047 0.953 42 H 0.107 0.893 43 H 0.131 0.869 44 H 0.093 0.907 45 H 0.207 0.793 46 H 0.160 0.840 47 H 0.194 0.806 48 H 0.123 0.877 49 H 0.081 0.919 50 H 0.196 0.804 51 H 0.252 0.748 52 H 0.147 0.853 53 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.911 -2.154 9.845 10.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.186 4.186 3 Si 0.667 3.333 4 C -0.158 4.158 5 C -0.075 4.075 6 C -0.181 4.181 7 C 0.080 3.920 8 O -0.237 6.237 9 C 0.060 3.940 10 C -0.015 4.015 11 C -0.227 4.227 12 C 0.371 3.629 13 O -0.455 6.455 14 N -0.345 5.345 15 C 0.014 3.986 16 H 0.106 0.894 17 C -0.177 4.177 18 C -0.134 4.134 19 H 0.099 0.901 20 C 0.020 3.980 21 N -0.157 5.157 22 C -0.092 4.092 23 C -0.324 4.324 24 C -0.157 4.157 25 N -0.161 5.161 26 C -0.156 4.156 27 C -0.212 4.212 28 C -0.079 4.079 29 O -0.074 6.074 30 C -0.225 4.225 31 C -0.095 4.095 32 H 0.235 0.765 33 H 0.142 0.858 34 H -0.230 1.230 35 H -0.206 1.206 36 H 0.159 0.841 37 H 0.152 0.848 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.256 0.744 41 H 0.066 0.934 42 H 0.125 0.875 43 H 0.149 0.851 44 H 0.111 0.889 45 H 0.224 0.776 46 H 0.177 0.823 47 H 0.211 0.789 48 H 0.141 0.859 49 H 0.100 0.900 50 H 0.213 0.787 51 H 0.268 0.732 52 H 0.164 0.836 53 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.606 -2.176 8.026 8.714 hybrid contribution -0.329 0.332 1.055 1.154 sum 2.277 -1.844 9.081 9.542 Atomic orbital electron populations 1.86566 1.18574 1.80400 1.50127 1.25144 0.83347 1.11699 0.98401 0.94047 0.90524 0.72219 0.76520 1.20273 1.02573 0.94967 0.97975 1.20966 0.96549 0.93897 0.96065 1.20634 1.02215 1.01114 0.94147 1.19189 0.94444 0.91706 0.86710 1.86044 1.69056 1.38927 1.29636 1.21139 0.98143 0.90765 0.83913 1.22046 0.90900 1.00394 0.88167 1.21399 0.97118 1.05405 0.98791 1.17510 0.81798 0.78758 0.84852 1.90783 1.80709 1.45968 1.28018 1.45601 1.17139 1.49016 1.22721 1.22430 0.84789 0.98304 0.93042 0.89420 1.23558 0.94625 0.97182 1.02316 1.22547 0.93050 0.97602 1.00238 0.90146 1.22014 0.81706 0.94197 1.00061 1.48960 1.26638 1.34869 1.05242 1.23178 0.93321 0.93379 0.99344 1.21865 1.06793 1.10500 0.93215 1.24308 0.96174 0.95747 0.99489 1.77272 1.15207 1.23243 1.00415 1.23313 0.91760 0.95495 1.05008 1.23270 1.00730 1.04485 0.92763 1.24934 0.92667 0.93149 0.97147 1.83794 1.44403 1.54069 1.25184 1.21404 1.06317 0.93348 1.01391 1.21052 0.95738 1.00277 0.92453 0.76532 0.85843 1.22951 1.20570 0.84147 0.84845 0.88357 0.87486 0.74406 0.93401 0.87481 0.85107 0.88902 0.77622 0.82260 0.78914 0.85916 0.90031 0.78710 0.73217 0.83577 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.40 12.83 -148.98 -1.91 -4.32 16 2 C -0.08 -0.12 2.80 71.23 0.20 0.07 16 3 Si 0.76 -0.08 29.88 68.60 2.05 1.97 16 4 C -0.16 -0.51 5.35 -19.85 -0.11 -0.62 16 5 C -0.06 -0.27 9.68 22.25 0.22 -0.06 16 6 C -0.16 -1.14 9.99 22.37 0.22 -0.92 16 7 C 0.12 1.00 6.69 22.51 0.15 1.15 16 8 O -0.32 -3.12 10.12 -92.35 -0.93 -4.05 16 9 C 0.13 0.70 4.74 71.24 0.34 1.04 16 10 C 0.04 0.19 7.00 25.26 0.18 0.36 16 11 C -0.22 -0.62 6.31 -18.99 -0.12 -0.74 16 12 C 0.58 3.13 7.81 86.65 0.68 3.80 16 13 O -0.57 -7.64 14.47 -4.07 -0.06 -7.69 16 14 N -0.69 1.70 5.36 -443.34 -2.38 -0.68 16 15 C 0.12 -0.18 4.21 45.52 0.19 0.01 16 16 H 0.09 0.45 7.50 -2.39 -0.02 0.43 16 17 C -0.14 0.37 7.45 31.18 0.23 0.61 16 18 C -0.11 0.42 3.86 -10.21 -0.04 0.38 16 19 H 0.08 0.23 7.97 -2.38 -0.02 0.21 16 20 C 0.14 -0.81 6.35 86.38 0.55 -0.26 16 21 N -0.37 -0.56 3.68 -348.07 -1.28 -1.84 16 22 C 0.05 -0.06 11.45 83.54 0.96 0.89 16 23 C -0.29 -0.48 10.80 21.99 0.24 -0.24 16 24 C 0.03 0.14 12.03 85.23 1.02 1.16 16 25 N -0.34 -2.69 12.28 -57.02 -0.70 -3.39 16 26 C -0.12 0.87 7.39 31.12 0.23 1.10 16 27 C -0.19 1.01 10.60 23.65 0.25 1.26 16 28 C -0.01 0.07 12.03 66.89 0.80 0.88 16 29 O -0.18 -0.39 10.52 4.44 0.05 -0.35 16 30 C -0.21 -0.90 9.04 22.37 0.20 -0.70 16 31 C -0.08 -0.19 8.66 22.26 0.19 0.01 16 32 H 0.39 -0.46 8.70 -74.06 -0.64 -1.10 16 33 H 0.12 0.02 7.96 -2.39 -0.02 0.00 16 34 H -0.30 -2.21 7.11 99.48 0.71 -1.51 16 35 H -0.28 -0.82 7.00 99.48 0.70 -0.12 16 36 H 0.14 0.36 8.06 -2.91 -0.02 0.33 16 37 H 0.13 0.76 8.06 -2.91 -0.02 0.74 16 38 H 0.10 0.06 7.65 -2.39 -0.02 0.04 16 39 H 0.11 0.68 6.02 -2.38 -0.01 0.67 16 40 H 0.42 -4.03 7.88 -92.71 -0.73 -4.76 16 41 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.11 -0.74 7.91 -2.39 -0.02 -0.76 16 43 H 0.13 -1.67 7.79 -2.38 -0.02 -1.69 16 44 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 45 H 0.21 -1.96 8.06 -2.91 -0.02 -1.98 16 46 H 0.16 -0.34 8.06 -2.91 -0.02 -0.37 16 47 H 0.19 0.04 8.06 -2.91 -0.02 0.02 16 48 H 0.12 -1.66 8.07 -2.39 -0.02 -1.68 16 49 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 50 H 0.20 -2.58 7.74 -2.91 -0.02 -2.60 16 51 H 0.25 -3.62 8.06 -2.91 -0.02 -3.64 16 52 H 0.15 0.06 6.30 -2.91 -0.02 0.04 16 53 H 0.15 -0.29 4.83 -2.91 -0.01 -0.30 16 Total: 0.00 -31.26 446.59 1.05 -30.21 By element: Atomic # 1 Polarization: -18.68 SS G_CDS: -0.37 Total: -19.05 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.59 Total: 9.19 kcal Atomic # 7 Polarization: -1.55 SS G_CDS: -4.36 Total: -5.91 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -2.86 Total: -16.41 kcal Atomic # 14 Polarization: -0.08 SS G_CDS: 2.05 Total: 1.97 kcal Total: -31.26 1.05 -30.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_4549634.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.157 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds