Wall clock time and date at job start Sun Mar 7 2021 02:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35994 * 117.00278 * 2 1 4 4 C 1.39153 * 120.07544 * 179.97438 * 3 2 1 5 5 O 1.35995 * 120.06973 * 359.95828 * 4 3 2 6 6 C 1.42901 * 116.99655 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.46992 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00330 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99981 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00085 * 179.97438 * 9 7 6 11 11 H 1.09006 * 112.84890 * 336.19722 * 10 9 7 12 12 C 1.53780 * 113.61248 * 107.50034 * 10 9 7 13 13 C 1.53783 * 87.07780 * 139.98190 * 12 10 9 14 14 H 1.09000 * 113.61313 * 89.11729 * 13 12 10 15 15 C 1.52998 * 113.69370 * 220.00480 * 13 12 10 16 16 N 1.46494 * 109.47533 * 272.53858 * 15 13 12 17 17 C 1.34949 * 126.03846 * 124.99748 * 16 15 13 18 18 C 1.35310 * 107.74551 * 179.97438 * 17 16 15 19 19 C 1.39865 * 107.92322 * 0.02562 * 18 17 16 20 20 N 1.30843 * 108.20118 * 359.73707 * 19 18 17 21 21 C 1.53777 * 113.61280 * 205.00091 * 10 9 7 22 22 C 1.38563 * 119.85501 * 180.23361 * 4 3 2 23 23 C 1.38241 * 119.99670 * 359.49027 * 22 4 3 24 24 N 1.48004 * 119.92584 * 180.25654 * 23 22 4 25 25 O 1.21799 * 119.99894 * 0.25234 * 24 23 22 26 26 O 1.21803 * 119.99986 * 180.26086 * 24 23 22 27 27 C 1.38256 * 120.14631 * 0.51367 * 23 22 4 28 28 C 1.50702 * 119.92529 * 179.76689 * 27 23 22 29 29 O 1.42900 * 109.47208 * 74.97361 * 28 27 23 30 30 Si 1.86299 * 109.47044 * 194.97647 * 28 27 23 31 31 C 1.38234 * 120.14580 * 359.74268 * 27 23 22 32 32 H 1.08999 * 109.46896 * 299.99589 * 1 2 3 33 33 H 1.09002 * 109.47167 * 59.99992 * 1 2 3 34 34 H 1.09003 * 109.47427 * 180.02562 * 1 2 3 35 35 H 1.08996 * 109.47352 * 299.99794 * 6 5 4 36 36 H 1.08996 * 109.47452 * 60.00247 * 6 5 4 37 37 H 0.96995 * 119.99933 * 0.02562 * 9 7 6 38 38 H 1.09001 * 113.61660 * 254.52643 * 12 10 9 39 39 H 1.08990 * 113.61400 * 25.43957 * 12 10 9 40 40 H 1.09006 * 109.46811 * 32.53977 * 15 13 12 41 41 H 1.08997 * 109.47041 * 152.53260 * 15 13 12 42 42 H 1.07995 * 126.12490 * 359.97438 * 17 16 15 43 43 H 1.08005 * 126.03923 * 179.97438 * 18 17 16 44 44 H 1.08001 * 125.90029 * 179.97438 * 19 18 17 45 45 H 1.08993 * 113.61613 * 334.56852 * 21 10 9 46 46 H 1.09006 * 113.61298 * 105.47149 * 21 10 9 47 47 H 1.07999 * 120.00133 * 179.72662 * 22 4 3 48 48 H 1.09002 * 109.46875 * 314.97616 * 28 27 23 49 49 H 0.96702 * 113.99820 * 60.00653 * 29 28 27 50 50 H 1.48498 * 109.99923 * 179.97438 * 30 28 27 51 51 H 1.48494 * 109.99902 * 301.31968 * 30 28 27 52 52 H 1.08004 * 120.00128 * 179.97438 * 31 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 0.0005 5 8 4.1795 0.1476 0.0019 6 6 5.6003 0.3006 0.0018 7 6 6.2518 -1.0584 0.0041 8 8 5.5670 -2.0593 0.0052 9 7 7.5957 -1.1614 0.0039 10 6 8.2291 -2.4824 0.0067 11 1 7.5835 -3.2605 0.4141 12 6 8.8770 -2.8576 -1.3365 13 6 10.0317 -3.4626 -0.5207 14 1 9.8794 -4.5096 -0.2586 15 6 11.4139 -3.1953 -1.1198 16 7 11.7368 -4.2441 -2.0903 17 6 12.0871 -4.0524 -3.3793 18 6 12.3026 -5.2680 -3.9333 19 6 12.0756 -6.2357 -2.9493 20 7 11.7415 -5.6228 -1.8426 21 6 9.6471 -2.4843 0.6017 22 6 4.0603 2.5233 0.0054 23 6 3.3030 3.6797 -0.0009 24 7 3.9716 5.0002 -0.0014 25 8 5.1877 5.0670 -0.0009 26 8 3.3056 6.0200 -0.0021 27 6 1.9224 3.6056 -0.0014 28 6 1.1017 4.8696 -0.0029 29 8 1.1357 5.4580 -1.3047 30 14 -0.6598 4.4667 0.4507 31 6 1.2933 2.3748 -0.0009 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 5.9066 0.8492 -0.8887 36 1 5.9065 0.8513 0.8912 37 1 8.1434 -0.3609 0.0027 38 1 8.3098 -3.5955 -1.9039 39 1 9.1705 -1.9957 -1.9356 40 1 11.4122 -2.2263 -1.6191 41 1 12.1600 -3.1932 -0.3253 42 1 12.1790 -3.0996 -3.8792 43 1 12.5969 -5.4576 -4.9550 44 1 12.1648 -7.3042 -3.0793 45 1 10.1510 -1.5204 0.5325 46 1 9.7014 -2.9209 1.5991 47 1 5.1386 2.5839 0.0103 48 1 1.5127 5.5706 0.7235 49 1 0.7843 4.8888 -2.0030 50 1 -1.4794 5.7050 0.4532 51 1 -1.2213 3.4873 -0.5140 52 1 0.2146 2.3196 -0.0009 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_4549636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:36:40 Heat of formation + Delta-G solvation = 16.732056 kcal Electronic energy + Delta-G solvation = -39599.250777 eV Core-core repulsion = 34152.797602 eV Total energy + Delta-G solvation = -5446.453175 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.166 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.38699 -42.14847 -42.04679 -41.27598 -40.12418 -39.35991 -39.09789 -37.72560 -37.23859 -35.25729 -33.62991 -32.70054 -32.53593 -31.01074 -30.07062 -28.87245 -28.23344 -27.91389 -26.76818 -25.86790 -24.45490 -23.66738 -23.17018 -22.04834 -21.92722 -21.54117 -20.78459 -20.51160 -19.82597 -19.54887 -18.77546 -18.65368 -18.50522 -18.16624 -17.76188 -17.71723 -17.45044 -17.07126 -16.89474 -16.50542 -16.30916 -16.21305 -16.15614 -15.73590 -15.53335 -15.27384 -15.01409 -14.81311 -14.53247 -14.47644 -14.24808 -13.90630 -13.78751 -13.67416 -13.49633 -13.46931 -13.34921 -13.07508 -12.90603 -12.70671 -12.49775 -12.48356 -12.38704 -12.32984 -12.24300 -12.12013 -11.88972 -11.71010 -11.56683 -11.47986 -11.07201 -10.65547 -10.49424 -10.33636 -10.18367 -9.50677 -9.47631 -5.01186 -1.35262 -0.44729 0.17297 0.31287 1.00526 1.12595 1.24215 1.35583 1.45662 1.68214 1.86255 1.87441 1.92900 1.95449 2.34306 2.96912 3.15662 3.25044 3.35561 3.40717 3.46302 3.47459 3.48275 3.57318 3.72610 3.86856 3.91581 3.92996 3.96373 4.04938 4.08453 4.08961 4.18446 4.24137 4.30225 4.32922 4.36582 4.50542 4.58809 4.59673 4.66671 4.70478 4.74677 4.75503 4.79611 4.90130 4.94960 5.01344 5.14886 5.17121 5.27520 5.46835 5.57798 5.75169 6.03339 6.20112 6.39055 6.42131 6.49593 6.78399 7.07395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.308 6.308 3 C 0.168 3.832 4 C 0.102 3.898 5 O -0.292 6.292 6 C 0.027 3.973 7 C 0.515 3.485 8 O -0.571 6.571 9 N -0.696 5.696 10 C 0.120 3.880 11 H 0.087 0.913 12 C -0.141 4.141 13 C -0.117 4.117 14 H 0.079 0.921 15 C 0.140 3.860 16 N -0.375 5.375 17 C 0.054 3.946 18 C -0.295 4.295 19 C 0.028 3.972 20 N -0.339 5.339 21 C -0.115 4.115 22 C -0.108 4.108 23 C -0.043 4.043 24 N 0.036 4.964 25 O -0.185 6.185 26 O -0.164 6.164 27 C -0.034 4.034 28 C -0.101 4.101 29 O -0.529 6.529 30 Si 0.773 3.227 31 C -0.172 4.172 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.424 0.576 38 H 0.044 0.956 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.093 0.907 42 H 0.207 0.793 43 H 0.159 0.841 44 H 0.194 0.806 45 H 0.126 0.874 46 H 0.082 0.918 47 H 0.186 0.814 48 H 0.129 0.871 49 H 0.383 0.617 50 H -0.294 1.294 51 H -0.250 1.250 52 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 0.639 0.883 1.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.219 6.219 3 C 0.119 3.881 4 C 0.054 3.946 5 O -0.205 6.205 6 C -0.051 4.051 7 C 0.301 3.699 8 O -0.449 6.449 9 N -0.350 5.350 10 C 0.015 3.985 11 H 0.105 0.895 12 C -0.179 4.179 13 C -0.137 4.137 14 H 0.097 0.903 15 C 0.020 3.980 16 N -0.157 5.157 17 C -0.092 4.092 18 C -0.324 4.324 19 C -0.157 4.157 20 N -0.162 5.162 21 C -0.154 4.154 22 C -0.127 4.127 23 C -0.127 4.127 24 N 0.550 4.450 25 O -0.396 6.396 26 O -0.378 6.378 27 C -0.036 4.036 28 C -0.208 4.208 29 O -0.336 6.336 30 Si 0.674 3.326 31 C -0.191 4.191 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.263 0.737 38 H 0.063 0.937 39 H 0.128 0.872 40 H 0.150 0.850 41 H 0.111 0.889 42 H 0.224 0.776 43 H 0.177 0.823 44 H 0.211 0.789 45 H 0.144 0.856 46 H 0.101 0.899 47 H 0.203 0.797 48 H 0.147 0.853 49 H 0.232 0.768 50 H -0.221 1.221 51 H -0.176 1.176 52 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.470 -0.627 2.296 2.798 hybrid contribution 0.960 0.667 -2.187 2.480 sum -0.510 0.039 0.109 0.524 Atomic orbital electron populations 1.23743 0.74979 1.06935 1.03744 1.86326 1.24550 1.24733 1.86318 1.18689 0.89271 0.86257 0.93862 1.17952 0.88685 0.85201 1.02724 1.86309 1.18600 1.26880 1.88721 1.22944 0.78714 0.95978 1.07449 1.20428 0.83339 0.90419 0.75714 1.90788 1.64092 1.40013 1.49970 1.45639 1.05001 1.10057 1.74270 1.22412 0.93487 0.85062 0.97558 0.89484 1.23556 0.96510 1.01086 0.96783 1.22534 0.93411 1.00050 0.97719 0.90287 1.22035 0.96364 0.88138 0.91511 1.48970 1.52254 1.04979 1.09502 1.23180 0.99071 1.01727 0.85252 1.21867 1.16243 0.91806 1.02500 1.24302 0.98932 1.01647 0.90843 1.77268 1.25666 0.88456 1.24792 1.23324 0.92846 1.00976 0.98241 1.20908 1.03069 0.88011 1.00736 1.20534 0.92648 0.82027 1.17475 1.43679 1.00815 1.03351 0.97200 1.94501 0.96478 1.94086 1.54512 1.94582 1.64463 1.25326 1.53438 1.20086 0.91061 0.97317 0.95173 1.25766 1.11638 0.93802 0.89632 1.86773 1.85375 1.45030 1.16397 0.94245 0.70254 0.79734 0.88336 1.21209 1.02191 0.88440 1.07264 0.89238 0.90715 0.85992 0.85342 0.85061 0.73689 0.93695 0.87169 0.85027 0.88887 0.77601 0.82298 0.78938 0.85624 0.89947 0.79706 0.85336 0.76816 1.22146 1.17587 0.79704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.12 16 2 O -0.31 -0.18 10.28 -79.62 -0.82 -1.00 16 3 C 0.17 -0.12 6.70 22.57 0.15 0.03 16 4 C 0.10 0.01 6.70 22.57 0.15 0.16 16 5 O -0.29 -0.84 9.46 -67.08 -0.63 -1.47 16 6 C 0.03 -0.14 5.22 71.24 0.37 0.23 16 7 C 0.52 0.34 7.91 87.66 0.69 1.03 16 8 O -0.57 -7.39 16.10 16.01 0.26 -7.14 16 9 N -0.70 4.72 5.35 -440.03 -2.36 2.36 16 10 C 0.12 -0.43 4.24 45.52 0.19 -0.23 16 11 H 0.09 0.31 7.47 -2.38 -0.02 0.29 16 12 C -0.14 0.54 7.43 31.12 0.23 0.77 16 13 C -0.12 0.52 3.86 -10.27 -0.04 0.48 16 14 H 0.08 0.18 7.97 -2.39 -0.02 0.16 16 15 C 0.14 -0.87 6.35 86.38 0.55 -0.32 16 16 N -0.37 -0.51 3.68 -348.08 -1.28 -1.79 16 17 C 0.05 -0.06 11.45 83.54 0.96 0.89 16 18 C -0.29 -0.52 10.80 21.99 0.24 -0.29 16 19 C 0.03 0.14 12.03 85.23 1.02 1.16 16 20 N -0.34 -2.69 12.28 -57.02 -0.70 -3.39 16 21 C -0.12 1.05 7.39 31.12 0.23 1.28 16 22 C -0.11 0.18 8.54 22.35 0.19 0.37 16 23 C -0.04 -0.09 6.85 36.38 0.25 0.16 16 24 N 0.04 0.29 4.45 -46.46 -0.21 0.08 16 25 O -0.18 -1.66 18.44 18.89 0.35 -1.31 16 26 O -0.16 -1.86 14.62 25.10 0.37 -1.49 16 27 C -0.03 0.04 5.26 -19.86 -0.10 -0.07 16 28 C -0.10 0.05 1.74 71.24 0.12 0.17 16 29 O -0.53 -1.54 11.80 -129.63 -1.53 -3.07 16 30 Si 0.77 -4.43 30.24 68.60 2.07 -2.36 16 31 C -0.17 0.79 7.65 22.35 0.17 0.96 16 32 H 0.09 -1.14 7.66 -2.39 -0.02 -1.16 16 33 H 0.07 -0.81 7.66 -2.39 -0.02 -0.83 16 34 H 0.12 -1.22 8.14 -2.39 -0.02 -1.24 16 35 H 0.13 -1.49 7.68 -2.39 -0.02 -1.50 16 36 H 0.13 -1.56 7.65 -2.39 -0.02 -1.58 16 37 H 0.42 -6.45 8.73 -92.71 -0.81 -7.25 16 38 H 0.04 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.11 -0.94 7.90 -2.39 -0.02 -0.96 16 40 H 0.13 -1.76 7.78 -2.38 -0.02 -1.78 16 41 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 42 H 0.21 -1.95 8.06 -2.91 -0.02 -1.97 16 43 H 0.16 -0.31 8.06 -2.91 -0.02 -0.33 16 44 H 0.19 0.07 8.06 -2.91 -0.02 0.04 16 45 H 0.13 -1.94 8.08 -2.39 -0.02 -1.96 16 46 H 0.08 -0.64 8.14 -2.38 -0.02 -0.66 16 47 H 0.19 -1.24 5.85 -2.91 -0.02 -1.26 16 48 H 0.13 0.25 6.07 -2.39 -0.01 0.24 16 49 H 0.38 -1.76 8.70 -74.06 -0.64 -2.41 16 50 H -0.29 -0.79 7.11 99.48 0.71 -0.09 16 51 H -0.25 1.66 6.68 99.48 0.66 2.32 16 52 H 0.19 -1.83 3.09 -2.91 -0.01 -1.83 16 Total: 0.00 -38.58 439.43 1.58 -37.00 By element: Atomic # 1 Polarization: -23.90 SS G_CDS: -0.44 Total: -24.34 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 6.49 Total: 7.92 kcal Atomic # 7 Polarization: 1.81 SS G_CDS: -4.54 Total: -2.74 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -2.01 Total: -15.49 kcal Atomic # 14 Polarization: -4.43 SS G_CDS: 2.07 Total: -2.36 kcal Total: -38.58 1.58 -37.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_4549636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.732 kcal (2) G-P(sol) polarization free energy of solvation -38.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds