Wall clock time and date at job start Sun Mar 7 2021 02:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86306 * 109.47304 * 2 1 4 4 C 1.50701 * 109.47330 * 120.00429 * 2 1 3 5 5 C 1.38244 * 119.96874 * 245.29178 * 4 2 1 6 6 C 1.38288 * 120.10735 * 180.25379 * 5 4 2 7 7 C 1.38126 * 120.05387 * 359.44975 * 6 5 4 8 8 C 1.38746 * 119.94556 * 0.28104 * 7 6 5 9 9 O 1.35900 * 120.05764 * 180.02562 * 8 7 6 10 10 C 1.42902 * 116.99943 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.47207 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00279 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99970 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00062 * 180.02562 * 13 11 10 15 15 H 1.08998 * 112.85184 * 336.19077 * 14 13 11 16 16 C 1.53782 * 113.61416 * 107.50292 * 14 13 11 17 17 C 1.53786 * 87.08029 * 139.98279 * 16 14 13 18 18 H 1.08994 * 113.69118 * 89.12692 * 17 16 14 19 19 C 1.53000 * 113.61441 * 220.01877 * 17 16 14 20 20 N 1.46497 * 109.47285 * 272.50018 * 19 17 16 21 21 C 1.34939 * 126.04538 * 124.99971 * 20 19 17 22 22 C 1.35310 * 107.75037 * 179.97438 * 21 20 19 23 23 C 1.39869 * 107.92362 * 359.97438 * 22 21 20 24 24 N 1.30843 * 108.19505 * 359.74705 * 23 22 21 25 25 C 1.53783 * 113.61437 * 205.00280 * 14 13 11 26 26 C 1.38166 * 119.97212 * 64.99802 * 4 2 1 27 27 H 0.96701 * 114.00473 * 59.99672 * 1 2 3 28 28 H 1.09007 * 109.46933 * 240.00527 * 2 1 3 29 29 H 1.48500 * 109.99935 * 298.68815 * 3 2 1 30 30 H 1.48495 * 109.99306 * 60.00323 * 3 2 1 31 31 H 1.07993 * 119.94966 * 0.02562 * 5 4 2 32 32 H 1.08002 * 119.97455 * 179.73146 * 6 5 4 33 33 H 1.07999 * 120.02655 * 180.25493 * 7 6 5 34 34 H 1.09002 * 109.46947 * 300.00698 * 10 9 8 35 35 H 1.08998 * 109.47276 * 60.00138 * 10 9 8 36 36 H 0.97000 * 119.99843 * 0.02562 * 13 11 10 37 37 H 1.08998 * 113.61136 * 254.52680 * 16 14 13 38 38 H 1.08998 * 113.61248 * 25.43489 * 16 14 13 39 39 H 1.09003 * 109.46981 * 32.49668 * 19 17 16 40 40 H 1.08995 * 109.47348 * 152.49237 * 19 17 16 41 41 H 1.08002 * 126.12301 * 359.97438 * 21 20 19 42 42 H 1.08007 * 126.03856 * 179.97438 * 22 21 20 43 43 H 1.07994 * 125.89894 * 180.02562 * 23 22 21 44 44 H 1.09004 * 113.61406 * 334.56474 * 25 14 13 45 45 H 1.08993 * 113.61793 * 105.38497 * 25 14 13 46 46 H 1.08006 * 120.02868 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.6335 -0.0105 2.1937 6 6 3.1003 -0.6607 3.3214 7 6 2.8562 -2.0093 3.4932 8 6 2.1469 -2.7129 2.5304 9 8 1.9049 -4.0397 2.6974 10 6 2.4107 -4.6466 3.8882 11 6 2.0489 -6.1094 3.8992 12 8 1.4194 -6.5854 2.9782 13 7 2.4248 -6.8889 4.9324 14 6 2.0736 -8.3111 4.9429 15 1 1.2023 -8.5364 4.3279 16 6 3.2695 -9.2429 4.6853 17 6 2.6808 -10.1674 5.7640 18 1 1.9763 -10.9020 5.3743 19 6 3.7358 -10.7856 6.6837 20 7 4.2332 -12.0289 6.0898 21 6 5.5243 -12.3248 5.8318 22 6 5.5629 -13.5625 5.2866 23 6 4.2505 -14.0399 5.2091 24 7 3.4531 -13.1237 5.6956 25 6 2.0050 -8.9183 6.3541 26 6 1.6845 -2.0596 1.3976 27 1 -0.3934 0.4417 -0.7650 28 1 1.7922 -0.5138 -0.8901 29 1 1.5878 2.4586 -1.2242 30 1 1.5615 2.4677 1.2085 31 1 2.8209 1.0451 2.0637 32 1 3.6524 -0.1126 4.0706 33 1 3.2174 -2.5157 4.3760 34 1 3.4951 -4.5406 3.9176 35 1 1.9742 -4.1574 4.7590 36 1 2.9280 -6.5081 5.6692 37 1 3.2734 -9.6827 3.6881 38 1 4.2299 -8.8069 4.9606 39 1 4.5628 -10.0867 6.8093 40 1 3.2904 -10.9997 7.6552 41 1 6.3745 -11.6876 6.0259 42 1 6.4504 -14.0889 4.9676 43 1 3.9481 -15.0007 4.8196 44 1 2.6197 -8.3937 7.0855 45 1 0.9881 -9.0949 6.7045 46 1 1.1321 -2.6051 0.6467 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_4860298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:37:01 Heat of formation + Delta-G solvation = 38.514366 kcal Electronic energy + Delta-G solvation = -28059.777028 eV Core-core repulsion = 23919.504651 eV Total energy + Delta-G solvation = -4140.272377 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.07060 -41.61588 -40.94667 -39.67513 -38.78524 -37.42201 -35.25193 -33.61715 -32.61115 -31.68945 -30.98584 -29.61074 -28.17843 -26.81800 -26.75970 -24.28533 -23.66902 -22.50065 -22.03944 -21.62884 -21.53456 -20.45643 -19.18010 -18.61186 -18.41750 -18.10510 -17.55055 -17.45084 -17.17246 -16.78139 -16.33562 -16.14572 -15.81221 -15.64268 -15.55760 -15.20742 -14.84015 -14.54697 -14.51383 -14.22489 -14.13574 -13.78173 -13.67888 -13.62321 -13.49630 -13.35403 -13.30165 -12.89772 -12.53771 -12.35077 -12.13721 -11.99989 -11.89162 -11.70686 -11.56544 -11.47831 -11.02486 -10.56116 -10.33336 -10.17860 -9.92799 -9.47102 -9.29604 -4.92635 0.19383 0.38303 1.01255 1.25750 1.38044 1.47887 1.61315 1.69232 1.93834 1.95931 2.56764 2.62888 3.35111 3.37309 3.46924 3.47867 3.57104 3.72807 3.78564 3.83015 3.91627 3.99690 4.07989 4.09677 4.12471 4.18171 4.24443 4.26532 4.33212 4.47496 4.50743 4.59664 4.64651 4.66311 4.74672 4.79642 4.90550 4.95250 4.96719 5.01069 5.15300 5.17570 5.22536 5.35555 5.45636 5.48650 5.67995 5.75449 6.20954 6.26389 6.45562 6.54216 6.78859 7.10459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.099 4.099 3 Si 0.784 3.216 4 C -0.048 4.048 5 C -0.161 4.161 6 C -0.070 4.070 7 C -0.201 4.201 8 C 0.113 3.887 9 O -0.325 6.325 10 C 0.038 3.962 11 C 0.511 3.489 12 O -0.578 6.578 13 N -0.694 5.694 14 C 0.117 3.883 15 H 0.082 0.918 16 C -0.140 4.140 17 C -0.117 4.117 18 H 0.077 0.923 19 C 0.140 3.860 20 N -0.375 5.375 21 C 0.055 3.945 22 C -0.295 4.295 23 C 0.027 3.973 24 N -0.341 5.341 25 C -0.114 4.114 26 C -0.151 4.151 27 H 0.395 0.605 28 H 0.088 0.912 29 H -0.287 1.287 30 H -0.292 1.292 31 H 0.145 0.855 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.425 0.575 37 H 0.043 0.957 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.093 0.907 41 H 0.209 0.791 42 H 0.160 0.840 43 H 0.193 0.807 44 H 0.128 0.872 45 H 0.080 0.920 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.518 4.529 6.876 12.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.207 4.207 3 Si 0.688 3.312 4 C -0.048 4.048 5 C -0.178 4.178 6 C -0.087 4.087 7 C -0.219 4.219 8 C 0.068 3.932 9 O -0.238 6.238 10 C -0.040 4.040 11 C 0.297 3.703 12 O -0.457 6.457 13 N -0.348 5.348 14 C 0.012 3.988 15 H 0.101 0.899 16 C -0.178 4.178 17 C -0.137 4.137 18 H 0.095 0.905 19 C 0.020 3.980 20 N -0.157 5.157 21 C -0.091 4.091 22 C -0.324 4.324 23 C -0.158 4.158 24 N -0.163 5.163 25 C -0.153 4.153 26 C -0.170 4.170 27 H 0.245 0.755 28 H 0.106 0.894 29 H -0.215 1.215 30 H -0.219 1.219 31 H 0.162 0.838 32 H 0.183 0.817 33 H 0.183 0.817 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.264 0.736 37 H 0.062 0.938 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.111 0.889 41 H 0.225 0.775 42 H 0.177 0.823 43 H 0.210 0.790 44 H 0.146 0.854 45 H 0.099 0.901 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.581 5.017 6.979 11.460 hybrid contribution -0.630 -0.824 -0.925 1.390 sum 6.950 4.192 6.053 10.125 Atomic orbital electron populations 1.86555 1.18688 1.80899 1.50952 1.25274 0.84076 1.13004 0.98305 0.93923 0.89985 0.70823 0.76492 1.19262 0.97325 0.92418 0.95781 1.21218 1.01208 1.00593 0.94806 1.21332 0.96839 0.93605 0.96953 1.21645 1.03463 0.96264 1.00522 1.19169 0.96300 0.82355 0.95339 1.86124 1.74729 1.20810 1.42164 1.22766 1.02820 0.89880 0.88537 1.20680 0.78628 0.88709 0.82256 1.90771 1.41212 1.76133 1.37587 1.45613 1.57222 1.09052 1.22953 1.22407 0.98144 0.78938 0.99296 0.89940 1.23557 0.99359 0.96311 0.98599 1.22530 0.97968 0.96115 0.97097 0.90454 1.22036 0.99055 0.80948 0.95935 1.48971 1.04753 1.13936 1.48066 1.23192 0.88626 0.98224 0.99090 1.21873 0.98533 0.98135 1.13904 1.24301 0.92648 0.99651 0.99165 1.77272 1.21084 0.96612 1.21359 1.23321 1.02771 0.93931 0.95261 1.20307 1.04074 0.94657 0.98005 0.75499 0.89362 1.21470 1.21917 0.83759 0.81683 0.81722 0.85202 0.85633 0.73603 0.93846 0.86902 0.84832 0.88868 0.77453 0.82256 0.78995 0.85405 0.90119 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.24 12.81 -148.98 -1.91 -5.15 16 2 C -0.10 -0.23 2.79 71.24 0.20 -0.03 16 3 Si 0.78 -1.26 29.86 68.60 2.05 0.79 16 4 C -0.05 -0.24 5.38 -19.88 -0.11 -0.35 16 5 C -0.16 -0.09 8.67 22.28 0.19 0.11 16 6 C -0.07 0.20 10.04 22.26 0.22 0.42 16 7 C -0.20 0.37 9.04 22.36 0.20 0.57 16 8 C 0.11 0.64 6.69 22.50 0.15 0.80 16 9 O -0.32 -2.60 9.67 -73.39 -0.71 -3.31 16 10 C 0.04 -0.11 5.22 71.23 0.37 0.26 16 11 C 0.51 1.63 7.91 87.66 0.69 2.32 16 12 O -0.58 -9.50 16.10 16.01 0.26 -9.24 16 13 N -0.69 3.77 5.35 -440.04 -2.36 1.41 16 14 C 0.12 -0.26 4.24 45.52 0.19 -0.06 16 15 H 0.08 0.47 7.46 -2.39 -0.02 0.45 16 16 C -0.14 0.43 7.43 31.12 0.23 0.66 16 17 C -0.12 0.45 3.87 -10.26 -0.04 0.41 16 18 H 0.08 0.25 7.97 -2.39 -0.02 0.23 16 19 C 0.14 -0.87 6.35 86.38 0.55 -0.32 16 20 N -0.37 -0.57 3.68 -348.08 -1.28 -1.85 16 21 C 0.06 -0.07 11.45 83.54 0.96 0.89 16 22 C -0.30 -0.55 10.80 21.99 0.24 -0.31 16 23 C 0.03 0.15 12.03 85.23 1.03 1.17 16 24 N -0.34 -2.84 12.28 -57.02 -0.70 -3.54 16 25 C -0.11 0.96 7.39 31.12 0.23 1.19 16 26 C -0.15 -1.32 9.62 22.36 0.22 -1.10 16 27 H 0.39 -1.07 8.74 -74.06 -0.65 -1.72 16 28 H 0.09 -0.05 7.96 -2.38 -0.02 -0.07 16 29 H -0.29 -0.73 7.11 99.48 0.71 -0.03 16 30 H -0.29 -1.30 7.04 99.48 0.70 -0.60 16 31 H 0.15 -0.49 4.86 -2.91 -0.01 -0.50 16 32 H 0.17 -1.61 8.06 -2.91 -0.02 -1.63 16 33 H 0.17 -1.62 6.30 -2.91 -0.02 -1.64 16 34 H 0.13 -1.34 7.66 -2.39 -0.02 -1.35 16 35 H 0.13 -1.18 7.66 -2.39 -0.02 -1.20 16 36 H 0.42 -6.24 8.73 -92.71 -0.81 -7.05 16 37 H 0.04 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.11 -0.94 7.90 -2.39 -0.02 -0.96 16 39 H 0.13 -1.83 7.77 -2.39 -0.02 -1.84 16 40 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 41 H 0.21 -2.04 8.06 -2.91 -0.02 -2.06 16 42 H 0.16 -0.31 8.06 -2.91 -0.02 -0.33 16 43 H 0.19 0.15 8.06 -2.91 -0.02 0.12 16 44 H 0.13 -1.95 8.08 -2.38 -0.02 -1.97 16 45 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 46 H 0.11 1.29 8.06 -2.91 -0.02 1.27 16 Total: 0.00 -36.71 388.61 0.47 -36.24 By element: Atomic # 1 Polarization: -21.58 SS G_CDS: -0.41 Total: -21.99 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 5.52 Total: 6.64 kcal Atomic # 7 Polarization: 0.36 SS G_CDS: -4.34 Total: -3.97 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -2.36 Total: -17.70 kcal Atomic # 14 Polarization: -1.26 SS G_CDS: 2.05 Total: 0.79 kcal Total: -36.71 0.47 -36.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_4860298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.752 kcal (2) G-P(sol) polarization free energy of solvation -36.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds