Wall clock time and date at job start Sun Mar 7 2021 02:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35986 * 117.00178 * 2 1 4 4 C 1.38674 * 120.00578 * 180.27322 * 3 2 1 5 5 C 1.38149 * 120.00237 * 180.25316 * 4 3 2 6 6 C 1.50693 * 120.00010 * 179.77269 * 5 4 3 7 7 O 1.42908 * 109.47184 * 254.72014 * 6 5 4 8 8 Si 1.86298 * 109.47618 * 14.72027 * 6 5 4 9 9 C 1.38676 * 119.99968 * 359.48833 * 5 4 3 10 10 O 1.35980 * 120.00248 * 180.25592 * 9 5 4 11 11 C 1.42901 * 116.99958 * 180.02562 * 10 9 5 12 12 C 1.50699 * 109.46826 * 179.97438 * 11 10 9 13 13 O 1.21286 * 120.00315 * 359.97438 * 12 11 10 14 14 N 1.34785 * 120.00227 * 179.97438 * 12 11 10 15 15 C 1.46495 * 120.00310 * 179.97438 * 14 12 11 16 16 H 1.09002 * 112.85168 * 336.19719 * 15 14 12 17 17 C 1.53786 * 113.61272 * 107.49998 * 15 14 12 18 18 C 1.53783 * 87.07709 * 139.98125 * 17 15 14 19 19 H 1.08999 * 113.61304 * 89.11736 * 18 17 15 20 20 C 1.53006 * 113.68921 * 220.00780 * 18 17 15 21 21 N 1.46501 * 109.46745 * 272.53631 * 20 18 17 22 22 C 1.34950 * 126.03160 * 124.72007 * 21 20 18 23 23 C 1.35321 * 107.74041 * 179.83661 * 22 21 20 24 24 C 1.39860 * 107.92224 * 0.42061 * 23 22 21 25 25 N 1.30842 * 108.20579 * 359.73966 * 24 23 22 26 26 C 1.53776 * 113.61405 * 204.99784 * 15 14 12 27 27 C 1.38723 * 119.99847 * 0.23827 * 9 5 4 28 28 C 1.38104 * 120.00143 * 0.02562 * 27 9 5 29 29 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47123 * 300.00444 * 1 2 3 31 31 H 1.09004 * 109.46702 * 60.00581 * 1 2 3 32 32 H 1.08008 * 119.99771 * 0.02612 * 4 3 2 33 33 H 1.09004 * 109.47724 * 134.72481 * 6 5 4 34 34 H 0.96699 * 113.99775 * 299.99786 * 7 6 5 35 35 H 1.48506 * 109.99834 * 298.68714 * 8 6 5 36 36 H 1.48502 * 110.00011 * 59.99978 * 8 6 5 37 37 H 1.08998 * 109.46683 * 299.99438 * 11 10 9 38 38 H 1.08996 * 109.47746 * 59.99927 * 11 10 9 39 39 H 0.96995 * 119.99072 * 359.97438 * 14 12 11 40 40 H 1.08996 * 113.61606 * 254.52964 * 17 15 14 41 41 H 1.08993 * 113.61481 * 25.43527 * 17 15 14 42 42 H 1.08991 * 109.46964 * 32.53447 * 20 18 17 43 43 H 1.08996 * 109.46763 * 152.53659 * 20 18 17 44 44 H 1.07993 * 126.13144 * 359.97438 * 22 21 20 45 45 H 1.07999 * 126.03578 * 180.16339 * 23 22 21 46 46 H 1.08000 * 125.90242 * 179.76105 * 24 23 22 47 47 H 1.09001 * 113.61505 * 334.56798 * 26 15 14 48 48 H 1.09000 * 113.61505 * 105.47162 * 26 15 14 49 49 H 1.07995 * 119.99763 * 180.02562 * 27 9 5 50 50 H 1.08000 * 120.00178 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4312 1.2843 -0.0057 5 6 4.0584 2.5152 -0.0004 6 6 5.5632 2.5941 -0.0015 7 8 6.0216 2.9674 1.2996 8 14 6.2720 0.9324 -0.4564 9 6 3.3031 3.6782 -0.0001 10 8 3.9203 4.8899 -0.0002 11 6 3.0803 6.0459 0.0007 12 6 3.9345 7.2874 0.0011 13 8 5.1436 7.1917 0.0012 14 7 3.3549 8.5043 0.0015 15 6 4.1852 9.7112 0.0025 16 1 5.1821 9.5388 0.4082 17 6 4.1859 10.4595 -1.3411 18 6 4.1371 11.7624 -0.5256 19 1 5.1214 12.1517 -0.2652 20 6 3.2160 12.8278 -1.1237 21 7 3.9634 13.6296 -2.0956 22 6 3.6235 13.8331 -3.3856 23 6 4.5670 14.6292 -3.9401 24 6 5.5210 14.9141 -2.9578 25 7 5.1603 14.3155 -1.8517 26 6 3.4820 10.9422 0.5982 27 6 1.9177 3.6056 -0.0001 28 6 1.2908 2.3751 0.0001 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 4.0195 0.3785 -0.0106 33 1 5.8876 3.3388 -0.7284 34 1 5.6912 3.8244 1.6021 35 1 5.8632 -0.0855 0.5448 36 1 5.8029 0.5327 -1.8075 37 1 2.4506 6.0380 -0.8889 38 1 2.4516 6.0376 0.8910 39 1 2.3880 8.5808 0.0011 40 1 5.1072 10.3347 -1.9099 41 1 3.2913 10.2847 -1.9386 42 1 2.3759 12.3438 -1.6214 43 1 2.8441 13.4742 -0.3287 44 1 2.7531 13.4343 -3.8853 45 1 4.5828 14.9788 -4.9617 46 1 6.4029 15.5234 -3.0895 47 1 2.3949 10.8993 0.5307 48 1 3.8351 11.2071 1.5948 49 1 1.3296 4.5113 -0.0003 50 1 0.2122 2.3185 0.0005 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_4974302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:37:05 Heat of formation + Delta-G solvation = 2.065381 kcal Electronic energy + Delta-G solvation = -32923.237422 eV Core-core repulsion = 28307.164687 eV Total energy + Delta-G solvation = -4616.072734 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.07910 -41.92062 -41.19527 -40.22577 -39.38442 -38.13565 -37.01144 -35.23276 -33.60908 -32.93160 -31.21609 -30.96192 -29.71474 -28.31517 -27.98122 -26.76260 -26.65420 -24.57995 -23.51500 -22.50998 -22.04448 -21.84345 -21.52916 -20.46557 -19.64121 -18.91729 -18.57072 -18.22815 -18.07764 -17.60338 -17.47803 -17.17707 -16.75736 -16.35095 -16.22308 -16.07186 -15.74462 -15.68616 -15.54637 -15.27839 -15.11995 -14.69307 -14.50973 -14.22924 -14.16240 -13.98150 -13.68056 -13.63908 -13.51163 -13.48886 -13.34078 -13.12748 -12.90217 -12.58762 -12.38518 -12.32413 -12.23581 -11.88566 -11.56205 -11.55214 -11.47581 -11.30462 -11.14522 -10.98816 -10.33191 -10.25567 -10.15727 -9.47350 -8.95064 -4.88471 -0.08501 0.19798 1.00848 1.30075 1.40398 1.41428 1.57164 1.68926 1.87727 1.95683 2.21489 2.41020 2.53338 3.35536 3.40587 3.46206 3.48133 3.54169 3.62063 3.73811 3.81372 3.90563 3.92206 3.97336 4.02281 4.06748 4.09178 4.11121 4.18604 4.25532 4.32614 4.32875 4.33389 4.50734 4.55396 4.60461 4.66565 4.67142 4.75249 4.80151 4.85804 4.90624 4.95647 4.99221 5.01866 5.06115 5.15628 5.18224 5.27965 5.50012 5.75310 6.05005 6.20581 6.29544 6.44461 6.51741 6.78638 7.11887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.342 6.342 3 C 0.088 3.912 4 C -0.143 4.143 5 C -0.119 4.119 6 C -0.085 4.085 7 O -0.545 6.545 8 Si 0.810 3.190 9 C 0.097 3.903 10 O -0.311 6.311 11 C 0.036 3.964 12 C 0.512 3.488 13 O -0.571 6.571 14 N -0.696 5.696 15 C 0.120 3.880 16 H 0.085 0.915 17 C -0.140 4.140 18 C -0.118 4.118 19 H 0.078 0.922 20 C 0.140 3.860 21 N -0.375 5.375 22 C 0.055 3.945 23 C -0.295 4.295 24 C 0.027 3.973 25 N -0.340 5.340 26 C -0.115 4.115 27 C -0.153 4.153 28 C -0.158 4.158 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.372 0.628 35 H -0.286 1.286 36 H -0.266 1.266 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.424 0.576 40 H 0.043 0.957 41 H 0.111 0.889 42 H 0.133 0.867 43 H 0.093 0.907 44 H 0.208 0.792 45 H 0.159 0.841 46 H 0.193 0.807 47 H 0.126 0.874 48 H 0.081 0.919 49 H 0.176 0.824 50 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.750 3.355 -1.953 12.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.257 6.257 3 C 0.043 3.957 4 C -0.161 4.161 5 C -0.120 4.120 6 C -0.193 4.193 7 O -0.351 6.351 8 Si 0.712 3.288 9 C 0.052 3.948 10 O -0.225 6.225 11 C -0.042 4.042 12 C 0.299 3.701 13 O -0.450 6.450 14 N -0.350 5.350 15 C 0.015 3.985 16 H 0.103 0.897 17 C -0.179 4.179 18 C -0.138 4.138 19 H 0.096 0.904 20 C 0.020 3.980 21 N -0.157 5.157 22 C -0.092 4.092 23 C -0.325 4.325 24 C -0.158 4.158 25 N -0.162 5.162 26 C -0.154 4.154 27 C -0.172 4.172 28 C -0.177 4.177 29 H 0.132 0.868 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.141 0.859 33 H 0.095 0.905 34 H 0.220 0.780 35 H -0.214 1.214 36 H -0.192 1.192 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.262 0.738 40 H 0.062 0.938 41 H 0.129 0.871 42 H 0.150 0.850 43 H 0.111 0.889 44 H 0.225 0.775 45 H 0.177 0.823 46 H 0.210 0.790 47 H 0.144 0.856 48 H 0.099 0.901 49 H 0.194 0.806 50 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.289 1.460 -0.867 10.428 hybrid contribution -1.707 1.360 -0.682 2.286 sum -11.996 2.820 -1.549 12.419 Atomic orbital electron populations 1.23392 0.75946 1.05730 1.02658 1.86081 1.23893 1.26676 1.89008 1.18993 0.91679 0.85672 0.99359 1.20149 0.92912 0.96846 1.06191 1.19545 0.96774 0.90651 1.05050 1.25374 0.91241 1.14134 0.88539 1.86655 1.73907 1.42260 1.32245 0.92488 0.90058 0.69851 0.76423 1.18693 0.91603 0.84253 1.00245 1.86097 1.35441 1.11704 1.89250 1.22779 0.92673 0.81719 1.07013 1.20578 0.88336 0.85640 0.75587 1.90784 1.16849 1.87375 1.49943 1.45621 1.11261 1.03707 1.74427 1.22384 0.95794 0.82849 0.97482 0.89655 1.23553 1.02847 0.94708 0.96792 1.22537 0.99974 0.93504 0.97757 0.90401 1.22036 0.93000 0.91512 0.91454 1.48980 1.18423 1.38853 1.09486 1.23185 1.01527 0.99299 0.85167 1.21873 0.98527 1.09546 1.02507 1.24301 1.01000 0.99534 0.90916 1.77272 0.99873 1.14176 1.24880 1.23319 1.02319 0.91555 0.98161 1.21471 0.92061 1.00061 1.03566 1.21443 1.01703 0.90664 1.03871 0.86774 0.91168 0.91098 0.85938 0.90463 0.77989 1.21352 1.19208 0.85644 0.85468 0.73753 0.93810 0.87117 0.84960 0.88893 0.77528 0.82291 0.78974 0.85553 0.90072 0.80627 0.81599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.34 -2.05 10.50 -93.40 -0.98 -3.03 16 3 C 0.09 0.54 6.69 22.49 0.15 0.70 16 4 C -0.14 -1.38 8.59 22.35 0.19 -1.19 16 5 C -0.12 -1.00 5.28 -19.78 -0.10 -1.10 16 6 C -0.09 -0.71 2.33 71.23 0.17 -0.55 16 7 O -0.54 -5.50 12.65 -148.98 -1.89 -7.39 16 8 Si 0.81 4.78 30.39 68.60 2.08 6.87 16 9 C 0.10 0.37 6.62 22.49 0.15 0.52 16 10 O -0.31 -1.12 8.56 -74.29 -0.64 -1.75 16 11 C 0.04 -0.21 5.22 71.24 0.37 0.16 16 12 C 0.51 0.05 7.91 87.66 0.69 0.74 16 13 O -0.57 -7.11 16.10 15.99 0.26 -6.86 16 14 N -0.70 5.22 5.35 -440.03 -2.36 2.87 16 15 C 0.12 -0.47 4.24 45.52 0.19 -0.28 16 16 H 0.09 0.30 7.46 -2.39 -0.02 0.29 16 17 C -0.14 0.59 7.43 31.12 0.23 0.82 16 18 C -0.12 0.56 3.86 -10.27 -0.04 0.52 16 19 H 0.08 0.18 7.96 -2.39 -0.02 0.16 16 20 C 0.14 -0.94 6.35 86.38 0.55 -0.40 16 21 N -0.37 -0.38 3.68 -348.06 -1.28 -1.66 16 22 C 0.05 -0.09 11.45 83.54 0.96 0.87 16 23 C -0.30 -0.45 10.80 21.99 0.24 -0.21 16 24 C 0.03 0.13 12.02 85.23 1.02 1.16 16 25 N -0.34 -2.64 12.27 -57.03 -0.70 -3.34 16 26 C -0.12 1.10 7.39 31.12 0.23 1.33 16 27 C -0.15 0.36 9.03 22.35 0.20 0.56 16 28 C -0.16 0.11 9.03 22.35 0.20 0.31 16 29 H 0.11 -0.74 8.14 -2.39 -0.02 -0.76 16 30 H 0.07 -0.47 7.66 -2.39 -0.02 -0.49 16 31 H 0.07 -0.49 7.66 -2.38 -0.02 -0.51 16 32 H 0.12 1.39 4.93 -2.91 -0.01 1.37 16 33 H 0.08 0.62 7.82 -2.38 -0.02 0.61 16 34 H 0.37 2.75 8.60 -74.06 -0.64 2.11 16 35 H -0.29 -3.26 6.82 99.48 0.68 -2.58 16 36 H -0.27 -2.21 7.11 99.48 0.71 -1.50 16 37 H 0.13 -1.56 7.66 -2.39 -0.02 -1.57 16 38 H 0.13 -1.60 7.66 -2.39 -0.02 -1.62 16 39 H 0.42 -6.91 8.73 -92.71 -0.81 -7.72 16 40 H 0.04 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.11 -1.01 7.90 -2.39 -0.02 -1.03 16 42 H 0.13 -1.87 7.78 -2.39 -0.02 -1.89 16 43 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 44 H 0.21 -2.08 8.06 -2.91 -0.02 -2.11 16 45 H 0.16 -0.35 8.06 -2.91 -0.02 -0.37 16 46 H 0.19 0.06 8.06 -2.91 -0.02 0.04 16 47 H 0.13 -2.05 8.08 -2.39 -0.02 -2.07 16 48 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 49 H 0.18 -2.01 6.29 -2.91 -0.02 -2.03 16 50 H 0.17 -1.21 6.29 -2.91 -0.02 -1.22 16 Total: 0.00 -34.04 416.71 0.57 -33.47 By element: Atomic # 1 Polarization: -23.74 SS G_CDS: -0.45 Total: -24.19 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 6.52 Total: 5.02 kcal Atomic # 7 Polarization: 2.20 SS G_CDS: -4.34 Total: -2.13 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -3.24 Total: -19.03 kcal Atomic # 14 Polarization: 4.78 SS G_CDS: 2.08 Total: 6.87 kcal Total: -34.04 0.57 -33.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_4974302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.533 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds