Wall clock time and date at job start Sun Mar 7 2021 02:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35999 * 116.99372 * 2 1 4 4 C 1.39155 * 120.06889 * 180.02562 * 3 2 1 5 5 O 1.35992 * 120.07298 * 359.97438 * 4 3 2 6 6 C 1.42906 * 117.00187 * 179.72897 * 5 4 3 7 7 C 1.50695 * 109.47045 * 180.02562 * 6 5 4 8 8 O 1.21274 * 120.00413 * 0.27121 * 7 6 5 9 9 N 1.34784 * 119.99635 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 6 11 11 H 1.09006 * 112.84822 * 23.79911 * 10 9 7 12 12 C 1.53775 * 113.61462 * 154.99913 * 10 9 7 13 13 C 1.53780 * 87.08390 * 139.98289 * 12 10 9 14 14 H 1.09003 * 113.61528 * 89.11243 * 13 12 10 15 15 C 1.52992 * 113.62018 * 220.02217 * 13 12 10 16 16 N 1.46498 * 109.47866 * 184.99949 * 15 13 12 17 17 C 1.34945 * 126.04151 * 124.71270 * 16 15 13 18 18 C 1.35318 * 107.74491 * 179.84283 * 17 16 15 19 19 C 1.39866 * 107.91883 * 0.42115 * 18 17 16 20 20 N 1.30836 * 108.20656 * 359.73991 * 19 18 17 21 21 C 1.53784 * 113.61488 * 252.49901 * 10 9 7 22 22 C 1.38565 * 119.85357 * 179.72710 * 4 3 2 23 23 C 1.38235 * 119.99920 * 0.27038 * 22 4 3 24 24 C 1.38257 * 120.14950 * 0.02562 * 23 22 4 25 25 C 1.50698 * 119.92760 * 180.02562 * 24 23 22 26 26 O 1.42909 * 109.46726 * 244.99732 * 25 24 23 27 27 Si 1.86290 * 109.47253 * 4.99695 * 25 24 23 28 28 C 1.38242 * 120.14103 * 359.97438 * 24 23 22 29 29 H 1.09007 * 109.47308 * 60.00400 * 1 2 3 30 30 H 1.09004 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47612 * 300.00098 * 1 2 3 32 32 H 1.09005 * 109.47002 * 60.00042 * 6 5 4 33 33 H 1.09002 * 109.46834 * 300.00409 * 6 5 4 34 34 H 0.96999 * 120.00044 * 0.02562 * 9 7 6 35 35 H 1.09005 * 113.61447 * 254.53082 * 12 10 9 36 36 H 1.08991 * 113.61578 * 25.43347 * 12 10 9 37 37 H 1.09005 * 109.46868 * 305.00163 * 15 13 12 38 38 H 1.09004 * 109.47597 * 64.99227 * 15 13 12 39 39 H 1.08004 * 126.12684 * 359.97438 * 17 16 15 40 40 H 1.07994 * 126.03817 * 180.16186 * 18 17 16 41 41 H 1.08006 * 125.89569 * 179.76192 * 19 18 17 42 42 H 1.08996 * 113.60949 * 334.56614 * 21 10 9 43 43 H 1.09001 * 113.61595 * 105.46866 * 21 10 9 44 44 H 1.08004 * 119.99639 * 180.29258 * 22 4 3 45 45 H 1.08001 * 119.93054 * 179.97438 * 23 22 4 46 46 H 1.09004 * 109.46971 * 125.00254 * 25 24 23 47 47 H 0.96699 * 113.99715 * 179.97438 * 26 25 24 48 48 H 1.48509 * 109.99984 * 178.68155 * 27 25 24 49 49 H 1.48501 * 110.00264 * 300.00050 * 27 25 24 50 50 H 1.08006 * 119.99640 * 179.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.4358 1.2865 -0.0005 5 8 4.1794 0.1479 -0.0005 6 6 5.6003 0.3009 -0.0071 7 6 6.2518 -1.0580 -0.0067 8 8 5.5670 -2.0589 -0.0063 9 7 7.5957 -1.1609 -0.0119 10 6 8.2292 -2.4818 -0.0109 11 1 7.5818 -3.2620 -0.4116 12 6 9.6445 -2.4867 -0.6121 13 6 10.0342 -3.4595 0.5134 14 1 9.8808 -4.5078 0.2570 15 6 11.4180 -3.1878 1.1067 16 7 11.7455 -4.2319 2.0807 17 6 12.8452 -5.0138 2.0670 18 6 12.7751 -5.8430 3.1341 19 6 11.5872 -5.5646 3.8180 20 7 10.9691 -4.5990 3.1875 21 6 8.8830 -2.8506 1.3313 22 6 4.0601 2.5235 -0.0063 23 6 3.3028 3.6799 -0.0058 24 6 1.9222 3.6058 0.0010 25 6 1.1014 4.8697 0.0009 26 8 0.3702 4.9628 1.2252 27 14 2.2299 6.3430 -0.1620 28 6 1.2931 2.3749 0.0067 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 5.9103 0.8532 0.8800 33 1 5.9026 0.8482 -0.9000 34 1 8.1434 -0.3604 -0.0154 35 1 9.6946 -2.9281 -1.6075 36 1 10.1487 -1.5224 -0.5497 37 1 12.1615 -3.1884 0.3096 38 1 11.4170 -2.2166 1.6016 39 1 13.6402 -4.9819 1.3366 40 1 13.5051 -6.5906 3.4068 41 1 11.2402 -6.0608 4.7124 42 1 9.1789 -1.9856 1.9249 43 1 8.3183 -3.5856 1.9048 44 1 5.1385 2.5841 -0.0115 45 1 3.7905 4.6435 -0.0098 46 1 0.4052 4.8507 -0.8376 47 1 -0.1813 5.7541 1.2947 48 1 1.4303 7.5940 -0.1953 49 1 3.1840 6.3802 0.9753 50 1 0.2145 2.3197 0.0124 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_60476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:37:18 Heat of formation + Delta-G solvation = 5.994975 kcal Electronic energy + Delta-G solvation = -32604.053242 eV Core-core repulsion = 27988.150908 eV Total energy + Delta-G solvation = -4615.902334 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.05286 -41.82184 -41.15037 -39.89062 -39.08655 -38.75764 -37.13542 -35.21740 -33.60621 -32.15448 -31.48685 -30.96043 -29.82545 -28.53519 -28.15619 -26.71222 -26.17992 -24.38164 -23.38485 -22.44692 -21.91327 -21.78365 -21.47719 -20.65089 -19.74568 -18.63270 -18.43674 -18.25047 -18.11926 -17.56521 -17.49456 -17.08934 -16.65236 -16.48227 -16.13238 -15.93237 -15.74773 -15.64357 -15.55486 -15.33710 -15.02763 -14.81443 -14.44458 -14.08558 -14.03472 -13.97931 -13.60426 -13.52435 -13.48553 -13.46908 -13.42280 -12.96107 -12.79686 -12.59393 -12.24639 -12.21507 -12.18070 -11.94683 -11.84986 -11.69313 -11.61309 -11.36157 -10.97518 -10.49838 -10.32906 -10.12892 -9.79420 -9.47471 -8.92928 -4.89923 0.15403 0.26094 1.02322 1.31449 1.42458 1.48836 1.63476 1.71058 1.96747 1.96998 2.29499 2.50667 2.58382 3.34537 3.37369 3.44587 3.52136 3.68126 3.71185 3.75774 3.88024 3.89137 3.99453 4.03617 4.10155 4.11569 4.15918 4.22747 4.25798 4.29318 4.32298 4.32656 4.39740 4.47171 4.61797 4.64288 4.70628 4.72413 4.78688 4.82167 4.93242 4.98313 4.98994 5.05594 5.09610 5.16599 5.18415 5.37647 5.51111 5.57581 5.76508 5.95611 6.21912 6.41260 6.53326 6.58881 6.80686 7.14411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.077 3.923 4 C 0.084 3.916 5 O -0.315 6.315 6 C 0.034 3.966 7 C 0.511 3.489 8 O -0.577 6.577 9 N -0.696 5.696 10 C 0.115 3.885 11 H 0.085 0.915 12 C -0.110 4.110 13 C -0.113 4.113 14 H 0.080 0.920 15 C 0.139 3.861 16 N -0.376 5.376 17 C 0.053 3.947 18 C -0.294 4.294 19 C 0.024 3.976 20 N -0.333 5.333 21 C -0.135 4.135 22 C -0.159 4.159 23 C -0.113 4.113 24 C -0.081 4.081 25 C -0.089 4.089 26 O -0.560 6.560 27 Si 0.774 3.226 28 C -0.152 4.152 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.424 0.576 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.133 0.867 38 H 0.095 0.905 39 H 0.208 0.792 40 H 0.159 0.841 41 H 0.191 0.809 42 H 0.095 0.905 43 H 0.040 0.960 44 H 0.178 0.822 45 H 0.156 0.844 46 H 0.093 0.907 47 H 0.395 0.605 48 H -0.288 1.288 49 H -0.292 1.292 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.355 7.247 -6.045 11.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.031 3.969 4 C 0.039 3.961 5 O -0.228 6.228 6 C -0.044 4.044 7 C 0.297 3.703 8 O -0.455 6.455 9 N -0.350 5.350 10 C 0.010 3.990 11 H 0.103 0.897 12 C -0.148 4.148 13 C -0.133 4.133 14 H 0.098 0.902 15 C 0.019 3.981 16 N -0.159 5.159 17 C -0.093 4.093 18 C -0.323 4.323 19 C -0.161 4.161 20 N -0.155 5.155 21 C -0.174 4.174 22 C -0.177 4.177 23 C -0.130 4.130 24 C -0.081 4.081 25 C -0.197 4.197 26 O -0.370 6.370 27 Si 0.679 3.321 28 C -0.171 4.171 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.151 0.849 34 H 0.263 0.737 35 H 0.108 0.892 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.113 0.887 39 H 0.225 0.775 40 H 0.177 0.823 41 H 0.208 0.792 42 H 0.114 0.886 43 H 0.058 0.942 44 H 0.195 0.805 45 H 0.173 0.827 46 H 0.111 0.889 47 H 0.245 0.755 48 H -0.216 1.216 49 H -0.219 1.219 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.380 7.192 -5.720 11.187 hybrid contribution -0.791 -0.451 1.231 1.531 sum 5.589 6.741 -4.488 9.840 Atomic orbital electron populations 1.23294 0.76797 1.05233 1.02114 1.86192 1.23058 1.26559 1.89108 1.18650 0.89933 0.85587 1.02710 1.18583 0.88229 0.86528 1.02807 1.86225 1.18301 1.29002 1.89307 1.22806 0.79314 0.95139 1.07103 1.20663 0.83331 0.90814 0.75474 1.90770 1.64267 1.40350 1.50138 1.45628 1.04956 1.10016 1.74384 1.22491 0.93752 0.85162 0.97592 0.89656 1.23298 0.92369 1.00998 0.98168 1.22500 0.93571 0.99826 0.97356 0.90177 1.22044 0.97706 0.88691 0.89654 1.49014 1.16159 1.29534 1.21200 1.23212 0.92565 0.92857 1.00679 1.21859 1.02095 1.08187 1.00183 1.24304 0.94902 0.96080 1.00839 1.77332 1.19910 1.18387 0.99853 1.23436 0.96828 1.00678 0.96493 1.21356 1.02279 0.89188 1.04860 1.21000 0.92402 0.99128 1.00518 1.19263 0.93879 0.93373 1.01635 1.25104 1.01324 1.04059 0.89189 1.86558 1.63252 1.48742 1.38490 0.94047 0.78714 0.72409 0.86927 1.21028 1.00589 0.90528 1.04975 0.91298 0.87051 0.92148 0.85811 0.84904 0.73739 0.89157 0.85739 0.84930 0.88673 0.77490 0.82314 0.79178 0.88630 0.94150 0.80485 0.82716 0.88904 0.75495 1.21580 1.21900 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 113.37 1.11 1.19 16 2 O -0.33 -4.33 10.28 -79.67 -0.82 -5.15 16 3 C 0.08 0.78 6.70 22.57 0.15 0.93 16 4 C 0.08 0.64 6.70 22.57 0.15 0.80 16 5 O -0.31 -3.29 9.45 -67.05 -0.63 -3.92 16 6 C 0.03 -0.03 5.22 71.23 0.37 0.34 16 7 C 0.51 2.64 7.91 87.65 0.69 3.33 16 8 O -0.58 -10.63 16.10 16.02 0.26 -10.37 16 9 N -0.70 2.41 5.35 -440.04 -2.36 0.06 16 10 C 0.12 -0.10 4.24 45.52 0.19 0.10 16 11 H 0.09 0.53 7.46 -2.38 -0.02 0.51 16 12 C -0.11 0.97 7.39 31.12 0.23 1.20 16 13 C -0.11 0.43 3.83 -10.27 -0.04 0.39 16 14 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 15 C 0.14 -0.84 6.35 86.38 0.55 -0.30 16 16 N -0.38 -0.63 3.68 -348.07 -1.28 -1.91 16 17 C 0.05 -0.05 11.45 83.54 0.96 0.91 16 18 C -0.29 -0.63 10.80 21.99 0.24 -0.40 16 19 C 0.02 0.14 12.02 85.24 1.02 1.16 16 20 N -0.33 -2.77 12.42 -57.02 -0.71 -3.47 16 21 C -0.14 -0.09 7.43 31.12 0.23 0.14 16 22 C -0.16 0.05 9.04 22.35 0.20 0.25 16 23 C -0.11 0.02 8.66 22.27 0.19 0.21 16 24 C -0.08 -0.24 5.38 -19.86 -0.11 -0.35 16 25 C -0.09 0.07 2.79 71.24 0.20 0.27 16 26 O -0.56 -1.31 12.81 -148.98 -1.91 -3.22 16 27 Si 0.77 -2.85 29.84 68.60 2.05 -0.81 16 28 C -0.15 -0.93 8.67 22.35 0.19 -0.74 16 29 H 0.07 0.03 7.68 -2.38 -0.02 0.01 16 30 H 0.11 0.11 8.14 -2.38 -0.02 0.09 16 31 H 0.06 0.13 7.65 -2.38 -0.02 0.12 16 32 H 0.12 -0.93 7.66 -2.38 -0.02 -0.95 16 33 H 0.13 -1.22 7.66 -2.39 -0.02 -1.24 16 34 H 0.42 -5.32 8.73 -92.71 -0.81 -6.13 16 35 H 0.09 -0.84 8.14 -2.38 -0.02 -0.86 16 36 H 0.12 -1.85 8.08 -2.39 -0.02 -1.87 16 37 H 0.13 -1.70 8.07 -2.38 -0.02 -1.72 16 38 H 0.10 -0.72 7.84 -2.39 -0.02 -0.74 16 39 H 0.21 -1.92 8.06 -2.91 -0.02 -1.94 16 40 H 0.16 -0.25 8.06 -2.91 -0.02 -0.27 16 41 H 0.19 0.26 8.06 -2.91 -0.02 0.24 16 42 H 0.10 -0.13 7.90 -2.39 -0.02 -0.15 16 43 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.18 -1.61 6.30 -2.91 -0.02 -1.63 16 45 H 0.16 -0.84 4.85 -2.91 -0.01 -0.86 16 46 H 0.09 -0.42 7.96 -2.39 -0.02 -0.44 16 47 H 0.39 -2.32 8.74 -74.06 -0.65 -2.96 16 48 H -0.29 -0.22 7.11 99.48 0.71 0.49 16 49 H -0.29 -0.74 7.04 99.48 0.70 -0.04 16 50 H 0.14 0.53 6.30 -2.91 -0.02 0.52 16 Total: 0.00 -39.55 418.12 0.71 -38.84 By element: Atomic # 1 Polarization: -19.06 SS G_CDS: -0.43 Total: -19.49 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 6.54 Total: 9.45 kcal Atomic # 7 Polarization: -0.99 SS G_CDS: -4.34 Total: -5.33 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -3.10 Total: -22.66 kcal Atomic # 14 Polarization: -2.85 SS G_CDS: 2.05 Total: -0.81 kcal Total: -39.55 0.71 -38.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_60476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.833 kcal (2) G-P(sol) polarization free energy of solvation -39.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds