Wall clock time and date at job start Sun Mar 7 2021 02:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47325 * 2 1 4 4 C 1.50701 * 109.46795 * 120.00278 * 2 1 3 5 5 C 1.38242 * 119.93682 * 245.02202 * 4 2 1 6 6 C 1.38240 * 120.04472 * 179.76975 * 5 4 2 7 7 Br 1.89099 * 120.03849 * 180.23359 * 6 5 4 8 8 C 1.38791 * 119.92821 * 0.48172 * 6 5 4 9 9 O 1.35914 * 120.06171 * 179.77243 * 8 6 5 10 10 C 1.42898 * 117.00311 * 179.71851 * 9 8 6 11 11 C 1.50697 * 109.47341 * 179.97438 * 10 9 8 12 12 O 1.21286 * 119.99998 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00136 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00126 * 180.02562 * 13 11 10 15 15 H 1.09002 * 112.84935 * 25.32833 * 14 13 11 16 16 C 1.53786 * 113.61643 * 156.52505 * 14 13 11 17 17 C 1.53783 * 87.08050 * 140.06125 * 16 14 13 18 18 H 1.08998 * 113.60991 * 89.11784 * 17 16 14 19 19 C 1.52991 * 113.61492 * 219.93527 * 17 16 14 20 20 N 1.46503 * 109.47411 * 185.00109 * 19 17 16 21 21 C 1.34946 * 126.03691 * 124.71405 * 20 19 17 22 22 C 1.35324 * 107.74652 * 179.84751 * 21 20 19 23 23 C 1.39871 * 107.91511 * 0.42186 * 22 21 20 24 24 N 1.30839 * 108.20228 * 359.73723 * 23 22 21 25 25 C 1.53781 * 113.61305 * 254.13352 * 14 13 11 26 26 C 1.38720 * 119.87703 * 359.49073 * 8 6 5 27 27 C 1.38138 * 119.95780 * 0.26123 * 26 8 6 28 28 H 0.96699 * 113.99948 * 300.00393 * 1 2 3 29 29 H 1.09002 * 109.47340 * 239.99813 * 2 1 3 30 30 H 1.48503 * 109.99939 * 178.67790 * 3 2 1 31 31 H 1.48501 * 109.99806 * 299.99894 * 3 2 1 32 32 H 1.08003 * 119.98435 * 0.02562 * 5 4 2 33 33 H 1.09012 * 109.46386 * 60.00102 * 10 9 8 34 34 H 1.09001 * 109.47274 * 300.00857 * 10 9 8 35 35 H 0.97006 * 119.99816 * 359.97438 * 13 11 10 36 36 H 1.08992 * 113.61675 * 254.61383 * 16 14 13 37 37 H 1.09000 * 113.60973 * 25.51671 * 16 14 13 38 38 H 1.08997 * 109.47353 * 305.00430 * 19 17 16 39 39 H 1.09002 * 109.47266 * 65.00348 * 19 17 16 40 40 H 1.08000 * 126.12963 * 359.97438 * 21 20 19 41 41 H 1.07995 * 126.04046 * 180.16242 * 22 21 20 42 42 H 1.07998 * 125.89219 * 179.76269 * 23 22 21 43 43 H 1.08999 * 113.61567 * 334.48111 * 25 14 13 44 44 H 1.08998 * 113.61196 * 105.38466 * 25 14 13 45 45 H 1.08005 * 120.01608 * 180.27229 * 26 8 6 46 46 H 1.07999 * 119.96510 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 2.6381 -0.0110 2.1908 6 6 3.0958 -0.6595 3.3226 7 35 4.0570 0.2989 4.6392 8 6 2.8535 -2.0159 3.4892 9 8 3.3062 -2.6572 4.5987 10 6 3.0147 -4.0519 4.7063 11 6 3.5916 -4.5881 5.9911 12 8 4.1928 -3.8485 6.7411 13 7 3.4395 -5.8895 6.3068 14 6 3.9998 -6.4106 7.5560 15 1 4.1133 -5.6431 8.3216 16 6 3.3019 -7.6850 8.0600 17 6 4.6977 -8.2019 8.4468 18 1 5.0019 -7.9240 9.4559 19 6 4.9038 -9.6890 8.1523 20 7 6.2109 -10.1111 8.6618 21 6 6.4376 -11.1252 9.5227 22 6 7.7717 -11.1920 9.7393 23 6 8.3801 -10.1780 8.9923 24 7 7.4454 -9.5295 8.3460 25 6 5.2585 -7.2709 7.3549 26 6 2.1433 -2.7147 2.5239 27 6 1.6838 -2.0607 1.3972 28 1 -0.3933 0.4417 0.7650 29 1 1.7924 -0.5139 -0.8900 30 1 3.5347 1.7702 0.0322 31 1 1.5616 2.4678 -1.2085 32 1 2.8294 1.0437 2.0587 33 1 3.4556 -4.5814 3.8616 34 1 1.9346 -4.1987 4.7033 35 1 2.9583 -6.4810 5.7071 36 1 2.6469 -7.5153 8.9144 37 1 2.8258 -8.2639 7.2686 38 1 4.1195 -10.2680 8.6398 39 1 4.8624 -9.8554 7.0758 40 1 5.6887 -11.7696 9.9590 41 1 8.2768 -11.9002 10.3793 42 1 9.4387 -9.9672 8.9552 43 1 5.3163 -7.7370 6.3713 44 1 6.1819 -6.7672 7.6406 45 1 1.9497 -3.7693 2.6534 46 1 1.1313 -2.6047 0.6454 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688084_6201210.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:37:23 Heat of formation + Delta-G solvation = 46.048618 kcal Electronic energy + Delta-G solvation = -30234.325505 eV Core-core repulsion = 25754.561835 eV Total energy + Delta-G solvation = -4479.763670 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.067 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.08582 -41.74161 -41.04991 -39.77907 -38.89973 -37.27827 -35.23830 -33.68811 -33.45934 -32.20428 -30.98998 -30.53687 -29.76751 -28.34871 -26.88608 -26.43932 -24.61882 -23.73251 -22.48853 -21.94485 -21.83900 -21.50579 -20.80402 -19.63427 -18.58804 -18.35112 -18.07806 -17.60893 -17.42089 -16.98144 -16.58749 -16.56427 -16.07260 -15.83175 -15.68552 -15.63781 -15.31841 -15.00349 -14.93215 -14.76791 -14.32646 -14.16206 -14.07052 -13.86879 -13.71919 -13.58186 -13.52495 -13.49072 -13.08048 -12.51180 -12.36552 -12.30407 -12.17774 -12.00124 -11.86756 -11.80591 -11.62441 -11.44038 -11.05734 -10.91088 -10.52364 -10.31502 -10.17916 -10.03111 -9.48851 -9.33319 -5.08395 -0.08341 0.02318 0.69929 1.00161 1.22202 1.30678 1.42577 1.57387 1.59338 1.93192 1.99818 2.32875 2.40130 3.14837 3.25589 3.34149 3.37424 3.44356 3.50608 3.60030 3.64373 3.67456 3.79589 3.83044 3.88726 3.92689 3.98364 4.03375 4.13672 4.24314 4.25511 4.35281 4.46956 4.52595 4.54504 4.61780 4.71648 4.71687 4.80112 4.89821 4.93539 5.02756 5.06531 5.14625 5.21356 5.33465 5.39861 5.77172 5.95603 6.09161 6.27934 6.48906 6.82487 7.04367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.060 4.060 3 Si 0.676 3.324 4 C -0.152 4.152 5 C -0.048 4.048 6 C -0.119 4.119 7 Br -0.023 7.023 8 C 0.161 3.839 9 O -0.273 6.273 10 C 0.037 3.963 11 C 0.516 3.484 12 O -0.505 6.505 13 N -0.718 5.718 14 C 0.124 3.876 15 H 0.118 0.882 16 C -0.137 4.137 17 C -0.119 4.119 18 H 0.100 0.900 19 C 0.145 3.855 20 N -0.373 5.373 21 C 0.050 3.950 22 C -0.274 4.274 23 C 0.042 3.958 24 N -0.290 5.290 25 C -0.134 4.134 26 C -0.204 4.204 27 C -0.035 4.035 28 H 0.380 0.620 29 H 0.116 0.884 30 H -0.253 1.253 31 H -0.250 1.250 32 H 0.142 0.858 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.402 0.598 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.172 0.828 41 H 0.147 0.853 42 H 0.182 0.818 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.139 0.861 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 -5.649 0.105 7.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.171 4.171 3 Si 0.578 3.422 4 C -0.154 4.154 5 C -0.067 4.067 6 C -0.200 4.200 7 Br 0.063 6.937 8 C 0.113 3.887 9 O -0.185 6.185 10 C -0.042 4.042 11 C 0.301 3.699 12 O -0.378 6.378 13 N -0.371 5.371 14 C 0.020 3.980 15 H 0.136 0.864 16 C -0.176 4.176 17 C -0.139 4.139 18 H 0.119 0.881 19 C 0.024 3.976 20 N -0.156 5.156 21 C -0.096 4.096 22 C -0.303 4.303 23 C -0.144 4.144 24 N -0.111 5.111 25 C -0.173 4.173 26 C -0.224 4.224 27 C -0.053 4.053 28 H 0.228 0.772 29 H 0.134 0.866 30 H -0.178 1.178 31 H -0.175 1.175 32 H 0.160 0.840 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.237 0.763 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.190 0.810 41 H 0.165 0.835 42 H 0.199 0.801 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.157 0.843 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.245 -3.356 -0.519 5.437 hybrid contribution -0.235 -2.194 -0.214 2.217 sum -4.481 -5.550 -0.733 7.171 Atomic orbital electron populations 1.86508 1.16950 1.81660 1.49347 1.24929 0.85290 1.09906 0.96977 0.94826 0.81597 0.78130 0.87651 1.20248 1.02274 0.95123 0.97718 1.20830 0.95325 0.99449 0.91129 1.21000 1.08257 0.92428 0.98282 1.96820 1.72625 1.72678 1.51606 1.18637 0.92956 0.90722 0.86396 1.86284 1.72781 1.21463 1.37945 1.22565 1.01940 0.81846 0.97830 1.19984 0.80436 0.82467 0.87057 1.90814 1.39512 1.56881 1.50584 1.45785 1.58422 1.09304 1.23595 1.22560 0.94149 0.94735 0.86560 0.86427 1.23379 0.96220 0.95991 1.01966 1.22675 0.96976 0.93278 1.00925 0.88132 1.21721 0.79952 0.95561 1.00359 1.48722 1.06386 1.24948 1.35502 1.22609 0.98371 0.93430 0.95203 1.21565 0.93136 1.05749 1.09880 1.23958 0.99556 0.94757 0.96115 1.77396 0.88723 1.21315 1.23669 1.23497 0.98435 0.96603 0.98731 1.21285 1.04198 1.00933 0.95973 1.20940 0.94961 0.93403 0.96031 0.77243 0.86644 1.17788 1.17470 0.84047 0.88543 0.88462 0.76334 0.89905 0.89006 0.88339 0.89614 0.81034 0.83547 0.80085 0.89503 0.90278 0.84321 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.35 12.83 -35.23 -0.45 -0.11 16 2 C -0.06 0.06 2.80 36.01 0.10 0.16 16 3 Si 0.68 -0.72 29.80 -169.99 -5.07 -5.78 16 4 C -0.15 0.07 5.35 -104.60 -0.56 -0.49 16 5 C -0.05 -0.01 8.40 -39.58 -0.33 -0.35 16 6 C -0.12 -0.24 6.24 -39.38 -0.25 -0.49 16 7 Br -0.02 -0.07 33.16 -68.01 -2.26 -2.33 16 8 C 0.16 0.23 6.68 -39.20 -0.26 -0.03 16 9 O -0.27 -0.66 9.00 -39.38 -0.35 -1.01 16 10 C 0.04 -0.06 5.22 36.00 0.19 0.13 16 11 C 0.52 0.46 7.91 -10.99 -0.09 0.37 16 12 O -0.50 -3.11 16.12 -14.36 -0.23 -3.34 16 13 N -0.72 1.72 5.36 -53.02 -0.28 1.43 16 14 C 0.12 -0.19 4.21 -67.12 -0.28 -0.47 16 15 H 0.12 0.09 7.50 -51.93 -0.39 -0.30 16 16 C -0.14 0.56 7.39 -25.92 -0.19 0.37 16 17 C -0.12 0.28 3.83 -89.67 -0.34 -0.07 16 18 H 0.10 -0.09 8.14 -51.93 -0.42 -0.51 16 19 C 0.15 -0.37 6.35 -4.04 -0.03 -0.40 16 20 N -0.37 -0.26 3.68 -61.37 -0.23 -0.48 16 21 C 0.05 -0.01 11.45 -17.22 -0.20 -0.21 16 22 C -0.27 -0.20 10.80 -40.01 -0.43 -0.64 16 23 C 0.04 0.08 12.03 -17.36 -0.21 -0.13 16 24 N -0.29 -0.91 12.42 30.62 0.38 -0.53 16 25 C -0.13 0.12 7.45 -25.78 -0.19 -0.07 16 26 C -0.20 0.21 9.04 -39.44 -0.36 -0.15 16 27 C -0.03 0.03 9.68 -39.60 -0.38 -0.35 16 28 H 0.38 -1.63 8.70 45.56 0.40 -1.23 16 29 H 0.12 -0.10 7.96 -51.93 -0.41 -0.51 16 30 H -0.25 -0.37 7.11 56.52 0.40 0.03 16 31 H -0.25 -0.50 7.11 56.52 0.40 -0.10 16 32 H 0.14 -0.17 4.90 -52.48 -0.26 -0.42 16 33 H 0.10 -0.40 7.66 -51.92 -0.40 -0.79 16 34 H 0.10 -0.43 7.66 -51.93 -0.40 -0.83 16 35 H 0.40 -2.34 8.71 -40.82 -0.36 -2.69 16 36 H 0.08 -0.34 8.14 -51.93 -0.42 -0.77 16 37 H 0.09 -0.54 8.07 -51.93 -0.42 -0.96 16 38 H 0.10 -0.49 8.07 -51.93 -0.42 -0.91 16 39 H 0.09 -0.26 7.85 -51.93 -0.41 -0.67 16 40 H 0.17 -0.60 8.06 -52.49 -0.42 -1.02 16 41 H 0.15 -0.14 8.06 -52.49 -0.42 -0.57 16 42 H 0.18 -0.10 8.06 -52.49 -0.42 -0.53 16 43 H 0.09 -0.11 7.91 -51.93 -0.41 -0.52 16 44 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 45 H 0.14 -0.54 6.30 -52.48 -0.33 -0.87 16 46 H 0.14 -0.30 8.06 -52.49 -0.42 -0.73 16 LS Contribution 409.36 15.07 6.17 6.17 Total: 0.00 -11.88 409.36 -12.09 -23.97 By element: Atomic # 1 Polarization: -9.22 SS G_CDS: -5.96 Total: -15.18 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.81 Total: -2.81 kcal Atomic # 7 Polarization: 0.55 SS G_CDS: -0.13 Total: 0.42 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -1.04 Total: -4.46 kcal Atomic # 14 Polarization: -0.72 SS G_CDS: -5.07 Total: -5.78 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -2.26 Total: -2.33 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -11.88 -12.09 -23.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_6201210.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.015 kcal (2) G-P(sol) polarization free energy of solvation -11.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds