Wall clock time and date at job start Sun Mar 7 2021 02:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86299 * 109.47311 * 2 1 4 4 C 1.50696 * 109.47377 * 120.00320 * 2 1 3 5 5 C 1.35447 * 125.56537 * 244.97405 * 4 2 1 6 6 C 1.39834 * 107.86845 * 179.75878 * 5 4 2 7 7 C 1.37876 * 107.08440 * 0.41653 * 6 5 4 8 8 C 1.46676 * 126.23936 * 179.84239 * 7 6 5 9 9 O 1.21699 * 119.99648 * 359.69712 * 8 7 6 10 10 N 1.34774 * 120.00622 * 179.69093 * 8 7 6 11 11 C 1.46496 * 120.00099 * 180.02562 * 10 8 7 12 12 H 1.08994 * 112.91109 * 23.75176 * 11 10 8 13 13 C 1.53787 * 113.61210 * 155.00440 * 11 10 8 14 14 C 1.53779 * 87.07963 * 139.97940 * 13 11 10 15 15 H 1.09006 * 113.61280 * 89.11401 * 14 13 11 16 16 C 1.52998 * 113.61250 * 220.01477 * 14 13 11 17 17 N 1.46496 * 109.47269 * 185.00070 * 16 14 13 18 18 C 1.34951 * 126.03866 * 125.00249 * 17 16 14 19 19 C 1.35320 * 107.74708 * 179.97438 * 18 17 16 20 20 C 1.39869 * 107.91915 * 359.97438 * 19 18 17 21 21 N 1.30836 * 108.20186 * 359.74095 * 20 19 18 22 22 C 1.53779 * 87.08402 * 334.56577 * 14 13 11 23 23 N 1.35537 * 125.56248 * 64.99386 * 4 2 1 24 24 H 0.96703 * 113.99742 * 299.99947 * 1 2 3 25 25 H 1.09007 * 109.46891 * 240.00393 * 2 1 3 26 26 H 1.48500 * 110.00023 * 300.00363 * 3 2 1 27 27 H 1.48503 * 109.99719 * 61.32048 * 3 2 1 28 28 H 1.07999 * 126.06906 * 0.02562 * 5 4 2 29 29 H 1.07997 * 126.46384 * 180.26099 * 6 5 4 30 30 H 0.97002 * 119.99411 * 0.02562 * 10 8 7 31 31 H 1.08997 * 113.61028 * 254.52900 * 13 11 10 32 32 H 1.08998 * 113.61447 * 25.34434 * 13 11 10 33 33 H 1.09007 * 109.47269 * 305.00322 * 16 14 13 34 34 H 1.08998 * 109.47235 * 64.99931 * 16 14 13 35 35 H 1.08004 * 126.12695 * 359.95327 * 18 17 16 36 36 H 1.08002 * 126.03580 * 180.02562 * 19 18 17 37 37 H 1.08000 * 125.89286 * 180.02562 * 20 19 18 38 38 H 1.09002 * 113.61557 * 270.88569 * 22 14 13 39 39 H 1.09004 * 113.61501 * 139.97990 * 22 14 13 40 40 H 0.97001 * 125.68113 * 0.02562 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6335 -0.1396 2.2382 6 6 2.9033 -1.1299 3.1879 7 6 2.3539 -2.3034 2.7166 8 6 2.3948 -3.6092 3.3834 9 8 2.9588 -3.7275 4.4553 10 7 1.8077 -4.6779 2.8093 11 6 1.8482 -5.9819 3.4757 12 1 1.9913 -5.9034 4.5534 13 6 0.6938 -6.9151 3.0740 14 6 1.7222 -8.0584 3.0744 15 1 1.8309 -8.5475 4.0424 16 6 1.5371 -9.0496 1.9237 17 7 2.4816 -10.1588 2.0779 18 6 2.1658 -11.4701 2.1217 19 6 3.3163 -12.1666 2.2719 20 6 4.3712 -11.2495 2.3210 21 7 3.8726 -10.0461 2.1989 22 6 2.7935 -6.9896 2.8006 23 7 1.7548 -2.0251 1.5089 24 1 -0.3933 0.4417 0.7651 25 1 1.7923 -0.5138 -0.8901 26 1 1.5615 2.4679 -1.2084 27 1 1.5880 2.4585 1.2243 28 1 2.9285 0.8975 2.2998 29 1 3.4427 -1.0007 4.1145 30 1 1.3584 -4.5835 1.9548 31 1 -0.0727 -7.0170 3.8421 32 1 0.2799 -6.6986 2.0891 33 1 0.5178 -9.4357 1.9371 34 1 1.7218 -8.5443 0.9757 35 1 1.1728 -11.8887 2.0501 36 1 3.4043 -13.2408 2.3408 37 1 5.4172 -11.4931 2.4350 38 1 2.9546 -6.7945 1.7403 39 1 3.7220 -7.1518 3.3480 40 1 1.2851 -2.6637 0.9499 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_6580494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:37:32 Heat of formation + Delta-G solvation = 85.997063 kcal Electronic energy + Delta-G solvation = -23584.328467 eV Core-core repulsion = 19983.135135 eV Total energy + Delta-G solvation = -3601.193332 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.56720 -42.04654 -40.94384 -39.36966 -37.82344 -35.31113 -33.66381 -32.15743 -31.40535 -30.93702 -28.65299 -26.94266 -26.75095 -24.53876 -22.92813 -21.92409 -21.71064 -21.46793 -21.29500 -20.76401 -19.71964 -18.29259 -18.17391 -17.34619 -16.74005 -16.58198 -16.29577 -16.08734 -15.71513 -15.41702 -15.14740 -15.05175 -14.90848 -14.52686 -14.39121 -14.01808 -13.95410 -13.69324 -13.56894 -13.53163 -13.45956 -12.99969 -12.35664 -12.31032 -11.91000 -11.89420 -11.64093 -11.44547 -11.29547 -10.83821 -10.35419 -10.25742 -10.09707 -9.49398 -9.31364 -4.83108 0.26140 1.00556 1.21862 1.52012 1.66452 1.69185 1.88096 1.95518 1.99652 2.20171 2.22779 3.29813 3.34921 3.39732 3.57688 3.61418 3.70750 3.77872 3.96542 4.08030 4.18404 4.23104 4.27073 4.31134 4.36748 4.50045 4.63487 4.67991 4.74109 4.77809 4.90255 4.92316 4.95303 5.00621 5.08450 5.11572 5.16163 5.42811 5.56884 5.75213 5.76401 6.19157 6.25765 6.39850 6.43577 6.79046 7.00280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.062 4.062 3 Si 0.792 3.208 4 C 0.034 3.966 5 C -0.206 4.206 6 C -0.119 4.119 7 C -0.063 4.063 8 C 0.587 3.413 9 O -0.574 6.574 10 N -0.704 5.704 11 C 0.115 3.885 12 H 0.093 0.907 13 C -0.114 4.114 14 C -0.110 4.110 15 H 0.084 0.916 16 C 0.139 3.861 17 N -0.377 5.377 18 C 0.053 3.947 19 C -0.293 4.293 20 C 0.025 3.975 21 N -0.331 5.331 22 C -0.133 4.133 23 N -0.510 5.510 24 H 0.390 0.610 25 H 0.136 0.864 26 H -0.298 1.298 27 H -0.282 1.282 28 H 0.166 0.834 29 H 0.144 0.856 30 H 0.411 0.589 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.092 0.908 35 H 0.207 0.793 36 H 0.160 0.840 37 H 0.193 0.807 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.556 -1.368 -4.962 6.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.170 4.170 3 Si 0.695 3.305 4 C -0.085 4.085 5 C -0.230 4.230 6 C -0.146 4.146 7 C -0.177 4.177 8 C 0.376 3.624 9 O -0.453 6.453 10 N -0.355 5.355 11 C 0.010 3.990 12 H 0.111 0.889 13 C -0.153 4.153 14 C -0.130 4.130 15 H 0.103 0.897 16 C 0.019 3.981 17 N -0.160 5.160 18 C -0.094 4.094 19 C -0.322 4.322 20 C -0.160 4.160 21 N -0.154 5.154 22 C -0.172 4.172 23 N -0.108 5.108 24 H 0.240 0.760 25 H 0.153 0.847 26 H -0.226 1.226 27 H -0.208 1.208 28 H 0.183 0.817 29 H 0.162 0.838 30 H 0.248 0.752 31 H 0.109 0.891 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.110 0.890 35 H 0.224 0.776 36 H 0.177 0.823 37 H 0.210 0.790 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -4.228 0.255 -4.890 6.470 hybrid contribution -1.194 -1.441 0.319 1.898 sum -5.422 -1.186 -4.571 7.190 Atomic orbital electron populations 1.86579 1.18032 1.80516 1.50447 1.25044 0.83641 1.12085 0.96262 0.93270 0.90303 0.70263 0.76637 1.21264 1.03679 0.84159 0.99418 1.20940 1.06206 1.00855 0.94962 1.21491 1.01431 0.91089 1.00569 1.20284 1.10899 0.95273 0.91270 1.17326 0.77916 0.83099 0.84051 1.90847 1.45996 1.85267 1.23218 1.45720 1.56669 1.08334 1.24730 1.22556 0.98436 0.80203 0.97767 0.88853 1.23309 0.95655 0.91794 1.04534 1.22486 0.97525 0.94120 0.98834 0.89749 1.22012 0.91624 0.85454 0.98988 1.48996 1.04986 1.06320 1.55721 1.23204 1.01964 0.83872 1.00316 1.21869 0.91719 1.01674 1.16988 1.24323 1.01647 0.90271 0.99773 1.77328 0.89392 1.23537 1.25106 1.23411 0.97447 0.94977 1.01398 1.41876 1.42483 1.09604 1.16826 0.76037 0.84671 1.22579 1.20848 0.81666 0.83849 0.75227 0.89070 0.86420 0.85055 0.88951 0.77601 0.82256 0.79024 0.89074 0.93534 0.73172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.46 12.88 -148.98 -1.92 -0.46 16 2 C -0.06 0.32 3.08 71.23 0.22 0.54 16 3 Si 0.79 -4.08 30.56 68.60 2.10 -1.98 16 4 C 0.03 -0.09 6.46 41.34 0.27 0.18 16 5 C -0.21 0.05 9.32 22.01 0.21 0.26 16 6 C -0.12 -0.55 10.65 22.57 0.24 -0.31 16 7 C -0.06 -0.22 7.06 40.35 0.28 0.06 16 8 C 0.59 3.94 7.79 86.45 0.67 4.62 16 9 O -0.57 -9.25 16.48 -4.35 -0.07 -9.33 16 10 N -0.70 0.84 5.35 -444.00 -2.38 -1.53 16 11 C 0.12 -0.05 4.24 45.52 0.19 0.15 16 12 H 0.09 0.50 7.46 -2.39 -0.02 0.48 16 13 C -0.11 0.91 7.39 31.12 0.23 1.14 16 14 C -0.11 0.41 3.83 -10.27 -0.04 0.38 16 15 H 0.08 0.00 8.14 -2.38 -0.02 -0.02 16 16 C 0.14 -0.79 6.35 86.38 0.55 -0.24 16 17 N -0.38 -0.62 3.68 -348.06 -1.28 -1.90 16 18 C 0.05 -0.05 11.45 83.54 0.96 0.91 16 19 C -0.29 -0.55 10.80 21.99 0.24 -0.31 16 20 C 0.03 0.13 12.03 85.24 1.02 1.16 16 21 N -0.33 -2.62 12.42 -57.02 -0.71 -3.32 16 22 C -0.13 -0.08 7.43 31.12 0.23 0.15 16 23 N -0.51 1.51 5.99 -171.93 -1.03 0.48 16 24 H 0.39 -2.79 8.70 -74.06 -0.64 -3.43 16 25 H 0.14 -1.10 7.96 -2.38 -0.02 -1.11 16 26 H -0.30 -0.65 7.11 99.48 0.71 0.06 16 27 H -0.28 0.14 7.11 99.48 0.71 0.84 16 28 H 0.17 -0.68 6.19 -2.91 -0.02 -0.70 16 29 H 0.14 0.81 8.06 -2.91 -0.02 0.79 16 30 H 0.41 -3.40 7.86 -92.71 -0.73 -4.13 16 31 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 32 H 0.12 -1.53 8.08 -2.39 -0.02 -1.55 16 33 H 0.13 -1.61 8.07 -2.38 -0.02 -1.63 16 34 H 0.09 -0.63 7.84 -2.39 -0.02 -0.65 16 35 H 0.21 -1.88 8.06 -2.91 -0.02 -1.90 16 36 H 0.16 -0.30 8.06 -2.91 -0.02 -0.33 16 37 H 0.19 0.13 8.06 -2.91 -0.02 0.11 16 38 H 0.09 -0.06 7.90 -2.39 -0.02 -0.08 16 39 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.43 -3.69 8.19 -92.71 -0.76 -4.45 16 Total: 0.00 -26.56 344.36 -1.02 -27.57 By element: Atomic # 1 Polarization: -17.18 SS G_CDS: -1.00 Total: -18.18 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 5.27 Total: 8.66 kcal Atomic # 7 Polarization: -0.89 SS G_CDS: -5.39 Total: -6.28 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -1.99 Total: -9.79 kcal Atomic # 14 Polarization: -4.08 SS G_CDS: 2.10 Total: -1.98 kcal Total: -26.56 -1.02 -27.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_6580494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.572 kcal (2) G-P(sol) polarization free energy of solvation -26.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds