Wall clock time and date at job start Sun Mar 7 2021 02:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33814 * 122.44917 * 2 1 4 4 C 1.50700 * 124.52565 * 0.02562 * 3 2 1 5 5 O 1.42909 * 109.46934 * 329.99641 * 4 3 2 6 6 Si 1.86300 * 109.47221 * 209.99893 * 4 3 2 7 7 S 1.70615 * 110.95589 * 180.02562 * 3 2 1 8 8 C 1.75828 * 91.56390 * 0.02562 * 7 3 2 9 9 C 1.46580 * 125.46084 * 179.97438 * 8 7 3 10 10 O 1.21702 * 119.99947 * 180.02562 * 9 8 7 11 11 N 1.34770 * 119.99939 * 0.02562 * 9 8 7 12 12 C 1.46506 * 120.00187 * 179.97438 * 11 9 8 13 13 H 1.09004 * 112.84667 * 336.20275 * 12 11 9 14 14 C 1.53954 * 113.66440 * 107.44244 * 12 11 9 15 15 C 1.53776 * 87.02120 * 139.93670 * 14 12 11 16 16 H 1.08999 * 113.61560 * 89.23020 * 15 14 12 17 17 C 1.53001 * 113.61463 * 220.05157 * 15 14 12 18 18 N 1.46506 * 109.46688 * 274.13369 * 17 15 14 19 19 C 1.34947 * 126.03702 * 125.00338 * 18 17 15 20 20 C 1.35307 * 107.74824 * 179.97438 * 19 18 17 21 21 C 1.39874 * 107.91884 * 359.97438 * 20 19 18 22 22 N 1.30836 * 108.20052 * 359.73989 * 21 20 19 23 23 C 1.53780 * 113.61660 * 205.00237 * 12 11 9 24 24 C 1.36658 * 109.07972 * 0.26323 * 8 7 3 25 25 H 1.08999 * 109.47309 * 89.99463 * 1 2 3 26 26 H 1.09000 * 109.46805 * 210.00095 * 1 2 3 27 27 H 1.09004 * 109.46691 * 329.99991 * 1 2 3 28 28 H 1.09000 * 109.47418 * 89.99591 * 4 3 2 29 29 H 0.96703 * 113.99631 * 300.00469 * 5 4 3 30 30 H 1.48502 * 109.99973 * 58.67725 * 6 4 3 31 31 H 1.48500 * 109.99925 * 179.97438 * 6 4 3 32 32 H 0.96999 * 120.00312 * 0.02562 * 11 9 8 33 33 H 1.09006 * 113.61630 * 25.41247 * 14 12 11 34 34 H 1.09000 * 113.66646 * 254.46633 * 14 12 11 35 35 H 1.08999 * 109.47230 * 154.13454 * 17 15 14 36 36 H 1.09000 * 109.47236 * 34.13049 * 17 15 14 37 37 H 1.08006 * 126.12506 * 359.95285 * 19 18 17 38 38 H 1.07999 * 126.04459 * 180.02562 * 20 19 18 39 39 H 1.08001 * 125.89534 * 180.02562 * 21 20 19 40 40 H 1.09001 * 113.61026 * 105.47500 * 23 12 11 41 41 H 1.08992 * 113.61610 * 334.56690 * 23 12 11 42 42 H 1.07998 * 123.34501 * 179.73254 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5162 0.0006 5 8 0.3751 2.4983 -0.6727 6 14 2.7923 3.6829 -0.8778 7 16 3.8969 0.7893 -0.0007 8 6 3.5937 -0.9427 -0.0018 9 6 4.6231 -1.9862 -0.0033 10 8 4.3001 -3.1596 -0.0045 11 7 5.9273 -1.6463 -0.0035 12 6 6.9562 -2.6892 -0.0045 13 1 6.5992 -3.6362 0.4003 14 6 7.6906 -2.8314 -1.3500 15 6 8.9794 -3.0279 -0.5344 16 1 9.1777 -4.0678 -0.2750 17 6 10.1976 -2.3223 -1.1337 18 7 10.8224 -3.1918 -2.1337 19 6 11.0765 -2.8687 -3.4190 20 6 11.6578 -3.9401 -4.0065 21 6 11.7632 -4.9525 -3.0471 22 7 11.2681 -4.5029 -1.9225 23 6 8.2981 -2.2313 0.5909 24 6 2.2446 -1.1600 -0.0075 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.4937 2.8503 1.0283 29 1 0.4256 2.2100 -1.5944 30 1 3.0189 3.2206 -2.2707 31 1 2.2220 5.0540 -0.8846 32 1 6.1847 -0.7111 -0.0022 33 1 7.6870 -1.9200 -1.9480 34 1 7.3952 -3.7131 -1.9188 35 1 10.9156 -2.1029 -0.3435 36 1 9.8825 -1.3924 -1.6069 37 1 10.8551 -1.9243 -3.8939 38 1 11.9837 -4.0023 -5.0342 39 1 12.1850 -5.9339 -3.2059 40 1 8.4922 -2.6293 1.5869 41 1 8.4608 -1.1557 0.5247 42 1 1.8020 -2.1451 -0.0135 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688084_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:37:42 Heat of formation + Delta-G solvation = 72.312569 kcal Electronic energy + Delta-G solvation = -25228.327883 eV Core-core repulsion = 21497.355545 eV Total energy + Delta-G solvation = -3730.972338 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.06331 -41.22503 -40.21250 -39.32398 -37.47699 -35.19228 -33.61151 -32.10329 -30.95174 -30.31222 -28.69967 -26.92033 -26.64174 -24.85001 -23.62825 -22.04911 -21.86529 -21.55507 -20.68559 -20.17967 -19.31886 -18.36732 -17.87817 -17.34128 -17.21001 -16.60738 -16.39933 -16.29946 -16.00499 -15.77057 -15.35409 -15.00123 -14.66002 -14.58919 -14.45942 -14.18447 -13.96619 -13.75148 -13.67535 -13.58419 -13.40999 -13.17469 -13.12204 -12.90065 -12.50587 -12.34657 -12.26695 -11.97501 -11.91273 -11.60437 -11.48535 -11.09241 -10.95430 -10.28722 -10.18713 -9.72172 -9.46452 -9.45144 -5.27280 -0.66020 0.25051 0.66084 0.99206 1.02681 1.29585 1.42586 1.58393 1.76710 1.99578 2.01612 2.14158 3.06807 3.24483 3.34038 3.40047 3.47067 3.60324 3.72263 3.82827 3.95192 4.03755 4.07127 4.22191 4.24369 4.35337 4.39037 4.45025 4.53115 4.57023 4.59936 4.72389 4.74470 4.83021 4.84708 4.89042 4.92350 4.99292 5.11658 5.16575 5.34138 5.40175 5.41049 5.79000 6.11560 6.13838 6.32179 6.83843 7.07041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.095 4.095 3 C -0.235 4.235 4 C -0.033 4.033 5 O -0.517 6.517 6 Si 0.663 3.337 7 S 0.200 5.800 8 C -0.262 4.262 9 C 0.593 3.407 10 O -0.524 6.524 11 N -0.717 5.717 12 C 0.126 3.874 13 H 0.121 0.879 14 C -0.146 4.146 15 C -0.120 4.120 16 H 0.110 0.890 17 C 0.146 3.854 18 N -0.371 5.371 19 C 0.052 3.948 20 C -0.275 4.275 21 C 0.044 3.956 22 N -0.295 5.295 23 C -0.137 4.137 24 C -0.047 4.047 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.129 0.871 29 H 0.378 0.622 30 H -0.247 1.247 31 H -0.238 1.238 32 H 0.399 0.601 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.172 0.828 38 H 0.147 0.853 39 H 0.183 0.817 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.419 5.682 -0.258 6.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.108 4.108 3 C -0.355 4.355 4 C -0.144 4.144 5 O -0.324 6.324 6 Si 0.560 3.440 7 S 0.468 5.532 8 C -0.382 4.382 9 C 0.380 3.620 10 O -0.401 6.401 11 N -0.368 5.368 12 C 0.022 3.978 13 H 0.138 0.862 14 C -0.185 4.185 15 C -0.139 4.139 16 H 0.129 0.871 17 C 0.024 3.976 18 N -0.153 5.153 19 C -0.094 4.094 20 C -0.304 4.304 21 C -0.142 4.142 22 N -0.116 5.116 23 C -0.176 4.176 24 C -0.080 4.080 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.147 0.853 29 H 0.227 0.773 30 H -0.171 1.171 31 H -0.161 1.161 32 H 0.234 0.766 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.189 0.811 38 H 0.164 0.836 39 H 0.199 0.801 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.101 6.345 0.972 7.129 hybrid contribution -1.783 -0.707 -1.673 2.545 sum 1.318 5.639 -0.701 5.833 Atomic orbital electron populations 1.20643 0.88670 1.03477 1.02685 1.18716 0.98427 0.90626 1.03030 1.24419 0.98668 1.00717 1.11659 1.24439 0.91216 0.95194 1.03574 1.86645 1.27497 1.89193 1.29061 0.95532 0.84916 0.80013 0.83494 1.82613 1.03018 0.98496 1.69058 1.24609 0.97967 0.96895 1.18734 1.16987 0.81719 0.87419 0.75893 1.90866 1.81569 1.18222 1.49462 1.45828 1.05253 1.09921 1.75775 1.22548 0.85547 0.92777 0.96965 0.86156 1.23595 0.94891 1.02984 0.97056 1.22698 0.92741 1.01616 0.96872 0.87141 1.21731 0.94354 0.90941 0.90549 1.48703 1.46776 1.11293 1.08556 1.22575 1.00552 1.00781 0.85531 1.21556 1.12722 0.94261 1.01898 1.23933 0.99311 1.00364 0.90592 1.77340 1.18683 0.92151 1.23461 1.23379 0.94113 1.00925 0.99158 1.20731 0.90954 1.00126 0.96230 0.91226 0.91751 0.89672 0.85344 0.77307 1.17070 1.16081 0.76646 0.89538 0.90623 0.89395 0.88525 0.81104 0.83561 0.80050 0.89689 0.89020 0.82764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.05 8.67 36.01 0.31 0.37 16 2 C -0.10 -0.03 5.75 -106.46 -0.61 -0.64 16 3 C -0.24 0.19 5.53 -35.86 -0.20 -0.01 16 4 C -0.03 0.06 2.76 36.01 0.10 0.16 16 5 O -0.52 0.42 9.85 -35.23 -0.35 0.08 16 6 Si 0.66 -1.48 31.31 -169.99 -5.32 -6.80 16 7 S 0.20 -0.38 19.79 -107.50 -2.13 -2.51 16 8 C -0.26 -0.28 6.45 -36.79 -0.24 -0.52 16 9 C 0.59 1.44 7.78 -12.90 -0.10 1.34 16 10 O -0.52 -3.33 16.44 5.19 0.09 -3.24 16 11 N -0.72 0.58 5.35 -54.26 -0.29 0.29 16 12 C 0.13 -0.12 4.24 -67.02 -0.28 -0.40 16 13 H 0.12 0.14 7.46 -51.93 -0.39 -0.25 16 14 C -0.15 0.18 7.45 -25.83 -0.19 -0.01 16 15 C -0.12 0.22 3.85 -89.81 -0.35 -0.12 16 16 H 0.11 0.03 8.00 -51.93 -0.42 -0.38 16 17 C 0.15 -0.32 6.33 -4.04 -0.03 -0.34 16 18 N -0.37 -0.37 3.68 -61.36 -0.23 -0.59 16 19 C 0.05 0.00 11.45 -17.23 -0.20 -0.19 16 20 C -0.27 -0.26 10.80 -40.01 -0.43 -0.69 16 21 C 0.04 0.09 12.03 -17.36 -0.21 -0.12 16 22 N -0.29 -1.01 12.30 30.63 0.38 -0.64 16 23 C -0.14 0.45 7.40 -25.92 -0.19 0.26 16 24 C -0.05 -0.07 9.80 -40.43 -0.40 -0.46 16 25 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 26 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 27 H 0.08 0.00 6.41 -51.93 -0.33 -0.34 16 28 H 0.13 -0.33 7.96 -51.93 -0.41 -0.74 16 29 H 0.38 -1.19 8.66 45.56 0.39 -0.79 16 30 H -0.25 0.00 7.11 56.52 0.40 0.40 16 31 H -0.24 -0.15 7.11 56.52 0.40 0.25 16 32 H 0.40 -1.36 7.84 -40.82 -0.32 -1.68 16 33 H 0.09 -0.20 7.92 -51.93 -0.41 -0.61 16 34 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 35 H 0.09 -0.23 8.14 -51.93 -0.42 -0.65 16 36 H 0.10 -0.45 7.80 -51.93 -0.41 -0.86 16 37 H 0.17 -0.56 8.06 -52.48 -0.42 -0.98 16 38 H 0.15 -0.12 8.06 -52.49 -0.42 -0.54 16 39 H 0.18 -0.10 8.06 -52.49 -0.42 -0.52 16 40 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 41 H 0.09 -0.47 8.08 -51.93 -0.42 -0.89 16 42 H 0.15 0.24 8.06 -52.49 -0.42 -0.18 16 LS Contribution 366.31 15.07 5.52 5.52 Total: 0.00 -9.04 366.31 -11.05 -20.09 By element: Atomic # 1 Polarization: -5.09 SS G_CDS: -5.71 Total: -10.80 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -3.01 Total: -1.40 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: -0.14 Total: -0.94 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: -0.26 Total: -3.17 kcal Atomic # 14 Polarization: -1.48 SS G_CDS: -5.32 Total: -6.80 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -2.13 Total: -2.51 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -9.04 -11.05 -20.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.407 kcal (2) G-P(sol) polarization free energy of solvation -9.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds