Wall clock time and date at job start Sun Mar 7 2021 02:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33814 * 122.44917 * 2 1 4 4 C 1.50700 * 124.52565 * 0.02562 * 3 2 1 5 5 O 1.42909 * 109.46934 * 329.99641 * 4 3 2 6 6 Si 1.86300 * 109.47221 * 209.99893 * 4 3 2 7 7 S 1.70615 * 110.95589 * 180.02562 * 3 2 1 8 8 C 1.75828 * 91.56390 * 0.02562 * 7 3 2 9 9 C 1.46580 * 125.46084 * 179.97438 * 8 7 3 10 10 O 1.21702 * 119.99947 * 180.02562 * 9 8 7 11 11 N 1.34770 * 119.99939 * 0.02562 * 9 8 7 12 12 C 1.46506 * 120.00187 * 179.97438 * 11 9 8 13 13 H 1.09004 * 112.84667 * 336.20275 * 12 11 9 14 14 C 1.53954 * 113.66440 * 107.44244 * 12 11 9 15 15 C 1.53776 * 87.02120 * 139.93670 * 14 12 11 16 16 H 1.08999 * 113.61560 * 89.23020 * 15 14 12 17 17 C 1.53001 * 113.61463 * 220.05157 * 15 14 12 18 18 N 1.46506 * 109.46688 * 274.13369 * 17 15 14 19 19 C 1.34947 * 126.03702 * 125.00338 * 18 17 15 20 20 C 1.35307 * 107.74824 * 179.97438 * 19 18 17 21 21 C 1.39874 * 107.91884 * 359.97438 * 20 19 18 22 22 N 1.30836 * 108.20052 * 359.73989 * 21 20 19 23 23 C 1.53780 * 113.61660 * 205.00237 * 12 11 9 24 24 C 1.36658 * 109.07972 * 0.26323 * 8 7 3 25 25 H 1.08999 * 109.47309 * 89.99463 * 1 2 3 26 26 H 1.09000 * 109.46805 * 210.00095 * 1 2 3 27 27 H 1.09004 * 109.46691 * 329.99991 * 1 2 3 28 28 H 1.09000 * 109.47418 * 89.99591 * 4 3 2 29 29 H 0.96703 * 113.99631 * 300.00469 * 5 4 3 30 30 H 1.48502 * 109.99973 * 58.67725 * 6 4 3 31 31 H 1.48500 * 109.99925 * 179.97438 * 6 4 3 32 32 H 0.96999 * 120.00312 * 0.02562 * 11 9 8 33 33 H 1.09006 * 113.61630 * 25.41247 * 14 12 11 34 34 H 1.09000 * 113.66646 * 254.46633 * 14 12 11 35 35 H 1.08999 * 109.47230 * 154.13454 * 17 15 14 36 36 H 1.09000 * 109.47236 * 34.13049 * 17 15 14 37 37 H 1.08006 * 126.12506 * 359.95285 * 19 18 17 38 38 H 1.07999 * 126.04459 * 180.02562 * 20 19 18 39 39 H 1.08001 * 125.89534 * 180.02562 * 21 20 19 40 40 H 1.09001 * 113.61026 * 105.47500 * 23 12 11 41 41 H 1.08992 * 113.61610 * 334.56690 * 23 12 11 42 42 H 1.07998 * 123.34501 * 179.73254 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5162 0.0006 5 8 0.3751 2.4983 -0.6727 6 14 2.7923 3.6829 -0.8778 7 16 3.8969 0.7893 -0.0007 8 6 3.5937 -0.9427 -0.0018 9 6 4.6231 -1.9862 -0.0033 10 8 4.3001 -3.1596 -0.0045 11 7 5.9273 -1.6463 -0.0035 12 6 6.9562 -2.6892 -0.0045 13 1 6.5992 -3.6362 0.4003 14 6 7.6906 -2.8314 -1.3500 15 6 8.9794 -3.0279 -0.5344 16 1 9.1777 -4.0678 -0.2750 17 6 10.1976 -2.3223 -1.1337 18 7 10.8224 -3.1918 -2.1337 19 6 11.0765 -2.8687 -3.4190 20 6 11.6578 -3.9401 -4.0065 21 6 11.7632 -4.9525 -3.0471 22 7 11.2681 -4.5029 -1.9225 23 6 8.2981 -2.2313 0.5909 24 6 2.2446 -1.1600 -0.0075 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.4937 2.8503 1.0283 29 1 0.4256 2.2100 -1.5944 30 1 3.0189 3.2206 -2.2707 31 1 2.2220 5.0540 -0.8846 32 1 6.1847 -0.7111 -0.0022 33 1 7.6870 -1.9200 -1.9480 34 1 7.3952 -3.7131 -1.9188 35 1 10.9156 -2.1029 -0.3435 36 1 9.8825 -1.3924 -1.6069 37 1 10.8551 -1.9243 -3.8939 38 1 11.9837 -4.0023 -5.0342 39 1 12.1850 -5.9339 -3.2059 40 1 8.4922 -2.6293 1.5869 41 1 8.4608 -1.1557 0.5247 42 1 1.8020 -2.1451 -0.0135 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:37:41 Heat of formation + Delta-G solvation = 73.451212 kcal Electronic energy + Delta-G solvation = -25228.278508 eV Core-core repulsion = 21497.355545 eV Total energy + Delta-G solvation = -3730.922963 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.05146 -41.27992 -40.15972 -39.35578 -37.42148 -35.24916 -33.61549 -32.08692 -30.96142 -30.25010 -28.65306 -26.79322 -26.60137 -24.79434 -23.59906 -22.03228 -21.92985 -21.55270 -20.60492 -20.14170 -19.28852 -18.32685 -17.83313 -17.32619 -17.17846 -16.55032 -16.35087 -16.26991 -16.02788 -15.77811 -15.38107 -15.02239 -14.62282 -14.53398 -14.43580 -14.16012 -13.91670 -13.66707 -13.54601 -13.48819 -13.33694 -13.15253 -13.05049 -12.84973 -12.47090 -12.31773 -12.21127 -11.87751 -11.84593 -11.55119 -11.47997 -11.25590 -10.88639 -10.32694 -10.23269 -9.67776 -9.45835 -9.37108 -5.11977 -0.68076 0.30203 0.70047 1.02740 1.06592 1.31307 1.55463 1.69116 1.89192 1.97033 1.98833 2.03366 3.23262 3.36952 3.49055 3.52195 3.56419 3.68667 3.77749 3.93117 4.08742 4.10874 4.20170 4.27613 4.34437 4.49583 4.52583 4.55909 4.60456 4.67274 4.74305 4.79348 4.80967 4.87172 4.91358 4.95974 4.98217 5.02395 5.15429 5.18263 5.37056 5.42027 5.48625 5.76836 6.21987 6.33692 6.35981 6.80287 7.00875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.110 4.110 3 C -0.238 4.238 4 C -0.040 4.040 5 O -0.530 6.530 6 Si 0.743 3.257 7 S 0.277 5.723 8 C -0.288 4.288 9 C 0.589 3.411 10 O -0.577 6.577 11 N -0.699 5.699 12 C 0.116 3.884 13 H 0.090 0.910 14 C -0.141 4.141 15 C -0.115 4.115 16 H 0.081 0.919 17 C 0.140 3.860 18 N -0.375 5.375 19 C 0.055 3.945 20 C -0.295 4.295 21 C 0.027 3.973 22 N -0.339 5.339 23 C -0.116 4.116 24 C -0.062 4.062 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.141 0.859 29 H 0.387 0.613 30 H -0.273 1.273 31 H -0.277 1.277 32 H 0.415 0.585 33 H 0.108 0.892 34 H 0.046 0.954 35 H 0.095 0.905 36 H 0.132 0.868 37 H 0.208 0.792 38 H 0.159 0.841 39 H 0.193 0.807 40 H 0.085 0.915 41 H 0.125 0.875 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 8.647 -0.365 9.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.358 4.358 4 C -0.151 4.151 5 O -0.339 6.339 6 Si 0.644 3.356 7 S 0.546 5.454 8 C -0.408 4.408 9 C 0.376 3.624 10 O -0.458 6.458 11 N -0.350 5.350 12 C 0.012 3.988 13 H 0.108 0.892 14 C -0.180 4.180 15 C -0.134 4.134 16 H 0.099 0.901 17 C 0.020 3.980 18 N -0.157 5.157 19 C -0.092 4.092 20 C -0.325 4.325 21 C -0.158 4.158 22 N -0.161 5.161 23 C -0.154 4.154 24 C -0.097 4.097 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.159 0.841 29 H 0.237 0.763 30 H -0.199 1.199 31 H -0.203 1.203 32 H 0.252 0.748 33 H 0.126 0.874 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.150 0.850 37 H 0.225 0.775 38 H 0.177 0.823 39 H 0.210 0.790 40 H 0.104 0.896 41 H 0.143 0.857 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.112 9.324 0.883 10.229 hybrid contribution -2.112 -1.549 -1.677 3.110 sum 1.999 7.775 -0.794 8.067 Atomic orbital electron populations 1.20605 0.88422 1.03116 1.02956 1.18724 0.98795 0.90582 1.04165 1.24699 0.99775 1.00862 1.10457 1.24712 0.91197 0.94638 1.04537 1.86625 1.28093 1.89216 1.29948 0.94710 0.83205 0.76553 0.81149 1.82214 1.01217 0.94949 1.66986 1.24635 0.97524 0.98932 1.19705 1.17277 0.82813 0.87023 0.75264 1.90834 1.82456 1.20392 1.52105 1.45702 1.04204 1.10826 1.74274 1.22539 0.86417 0.92011 0.97866 0.89158 1.23584 0.95035 1.02674 0.96687 1.22516 0.92897 1.00543 0.97472 0.90097 1.22040 0.93863 0.91460 0.90684 1.48974 1.46465 1.10757 1.09511 1.23182 0.99127 1.01757 0.85095 1.21866 1.13578 0.94481 1.02542 1.24302 0.99316 1.01368 0.90817 1.77265 1.20238 0.94017 1.24598 1.23335 0.91105 1.02573 0.98426 1.20744 0.91581 1.00102 0.97232 0.90694 0.92121 0.89925 0.84134 0.76267 1.19877 1.20286 0.74753 0.87359 0.93545 0.88724 0.84974 0.77550 0.82312 0.78973 0.89632 0.85653 0.84250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.04 8.67 71.24 0.62 0.66 16 2 C -0.11 -0.11 5.75 -21.05 -0.12 -0.23 16 3 C -0.24 0.61 5.53 24.68 0.14 0.75 16 4 C -0.04 0.19 2.76 71.24 0.20 0.39 16 5 O -0.53 1.25 9.85 -148.98 -1.47 -0.22 16 6 Si 0.74 -4.43 31.31 68.60 2.15 -2.29 16 7 S 0.28 -1.54 19.79 -56.49 -1.12 -2.66 16 8 C -0.29 -0.74 6.45 24.08 0.16 -0.59 16 9 C 0.59 3.59 7.78 86.42 0.67 4.26 16 10 O -0.58 -9.06 16.44 -4.36 -0.07 -9.13 16 11 N -0.70 1.32 5.35 -443.80 -2.38 -1.06 16 12 C 0.12 -0.14 4.24 45.58 0.19 0.05 16 13 H 0.09 0.47 7.46 -2.39 -0.02 0.45 16 14 C -0.14 0.32 7.45 31.18 0.23 0.55 16 15 C -0.11 0.43 3.85 -10.27 -0.04 0.39 16 16 H 0.08 0.21 8.00 -2.39 -0.02 0.19 16 17 C 0.14 -0.83 6.33 86.38 0.55 -0.29 16 18 N -0.37 -0.58 3.68 -348.05 -1.28 -1.86 16 19 C 0.05 -0.06 11.45 83.54 0.96 0.90 16 20 C -0.30 -0.57 10.80 21.99 0.24 -0.33 16 21 C 0.03 0.14 12.03 85.24 1.03 1.17 16 22 N -0.34 -2.74 12.30 -57.02 -0.70 -3.45 16 23 C -0.12 0.91 7.40 31.12 0.23 1.14 16 24 C -0.06 -0.27 9.80 21.72 0.21 -0.06 16 25 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 26 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 27 H 0.08 0.00 6.41 -2.38 -0.02 -0.01 16 28 H 0.14 -0.98 7.96 -2.39 -0.02 -1.00 16 29 H 0.39 -2.66 8.66 -74.06 -0.64 -3.30 16 30 H -0.27 0.39 7.11 99.48 0.71 1.10 16 31 H -0.28 -0.23 7.11 99.48 0.71 0.48 16 32 H 0.41 -3.70 7.84 -92.71 -0.73 -4.42 16 33 H 0.11 -0.72 7.92 -2.38 -0.02 -0.74 16 34 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 36 H 0.13 -1.74 7.80 -2.39 -0.02 -1.76 16 37 H 0.21 -1.96 8.06 -2.91 -0.02 -1.98 16 38 H 0.16 -0.29 8.06 -2.91 -0.02 -0.31 16 39 H 0.19 0.11 8.06 -2.91 -0.02 0.09 16 40 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 41 H 0.13 -1.78 8.08 -2.39 -0.02 -1.80 16 42 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 Total: 0.00 -25.50 366.31 0.11 -25.39 By element: Atomic # 1 Polarization: -13.21 SS G_CDS: -0.27 Total: -13.49 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 5.25 Total: 8.76 kcal Atomic # 7 Polarization: -2.01 SS G_CDS: -4.36 Total: -6.36 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -1.54 Total: -9.36 kcal Atomic # 14 Polarization: -4.43 SS G_CDS: 2.15 Total: -2.29 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -1.12 Total: -2.66 kcal Total: -25.50 0.11 -25.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.841 kcal (2) G-P(sol) polarization free energy of solvation -25.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds