Wall clock time and date at job start Sun Mar 7 2021 02:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86299 * 109.47218 * 2 1 4 4 C 1.50699 * 109.47229 * 239.99467 * 2 1 3 5 5 C 1.32766 * 124.71550 * 300.00218 * 4 2 1 6 6 C 1.44425 * 113.08895 * 179.97438 * 5 4 2 7 7 C 1.47191 * 123.46449 * 179.97438 * 6 5 4 8 8 O 1.21634 * 119.99892 * 0.02716 * 7 6 5 9 9 N 1.34770 * 119.99817 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99738 * 180.02562 * 9 7 6 11 11 H 1.08999 * 112.85132 * 334.66501 * 10 9 7 12 12 C 1.53778 * 113.61332 * 105.86946 * 10 9 7 13 13 C 1.53949 * 87.02283 * 139.94917 * 12 10 9 14 14 H 1.09004 * 113.61565 * 89.19391 * 13 12 10 15 15 C 1.52999 * 113.67152 * 220.06329 * 13 12 10 16 16 N 1.46499 * 109.46990 * 272.56268 * 15 13 12 17 17 C 1.34945 * 126.03817 * 125.00164 * 16 15 13 18 18 C 1.35310 * 107.74878 * 179.97438 * 17 16 15 19 19 C 1.39867 * 107.92008 * 359.97438 * 18 17 16 20 20 N 1.30845 * 108.20135 * 359.74365 * 19 18 17 21 21 C 1.53775 * 87.11207 * 334.63573 * 13 12 10 22 22 C 1.36014 * 113.07275 * 359.97438 * 6 5 4 23 23 S 1.70444 * 110.81789 * 0.26734 * 22 6 5 24 24 H 0.96694 * 113.99943 * 60.00422 * 1 2 3 25 25 H 1.09003 * 109.46885 * 119.99697 * 2 1 3 26 26 H 1.48506 * 109.99600 * 298.68042 * 3 2 1 27 27 H 1.48497 * 110.00007 * 59.99580 * 3 2 1 28 28 H 1.08006 * 123.45324 * 359.97438 * 5 4 2 29 29 H 0.97004 * 120.00621 * 0.02562 * 9 7 6 30 30 H 1.09006 * 113.61018 * 254.52562 * 12 10 9 31 31 H 1.09006 * 113.61867 * 25.42776 * 12 10 9 32 32 H 1.09000 * 109.46533 * 32.55595 * 15 13 12 33 33 H 1.08998 * 109.47534 * 152.55939 * 15 13 12 34 34 H 1.08009 * 126.12722 * 359.97438 * 17 16 15 35 35 H 1.08003 * 126.04450 * 179.97438 * 18 17 16 36 36 H 1.07999 * 125.90489 * 180.02562 * 19 18 17 37 37 H 1.09003 * 113.61368 * 270.81335 * 21 13 12 38 38 H 1.09002 * 113.69577 * 139.91910 * 21 13 12 39 39 H 1.08002 * 124.58647 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6689 -1.9764 -1.5326 6 6 2.2772 -2.4006 -2.7719 7 6 2.1352 -3.7582 -3.3228 8 8 1.4771 -4.5902 -2.7277 9 7 2.7343 -4.0792 -4.4865 10 6 2.5925 -5.4302 -5.0350 11 1 2.3857 -6.1783 -4.2697 12 6 1.6456 -5.5078 -6.2442 13 6 2.6498 -6.4955 -6.8655 14 1 2.4587 -7.5359 -6.6025 15 6 2.8628 -6.2920 -8.3669 16 7 1.8612 -7.0598 -9.1108 17 6 1.0104 -6.5685 -10.0359 18 6 0.2522 -7.5951 -10.4855 19 6 0.6537 -8.7536 -9.8125 20 7 1.6221 -8.4350 -8.9924 21 6 3.7268 -5.8278 -5.9944 22 6 2.9949 -1.4167 -3.3777 23 16 2.9493 0.0189 -2.4601 24 1 -0.3933 0.4416 -0.7650 25 1 1.7923 -0.5138 0.8900 26 1 1.5879 2.4585 -1.2243 27 1 1.5615 2.4679 1.2084 28 1 1.0627 -2.6226 -0.9150 29 1 3.2595 -3.4158 -4.9609 30 1 0.6784 -5.9544 -6.0134 31 1 1.5597 -4.5696 -6.7926 32 1 2.7619 -5.2337 -8.6079 33 1 3.8606 -6.6338 -8.6420 34 1 0.9462 -5.5400 -10.3595 35 1 -0.5256 -7.5313 -11.2321 36 1 0.2394 -9.7415 -9.9497 37 1 4.2110 -4.9773 -6.4743 38 1 4.4382 -6.5311 -5.5616 39 1 3.5259 -1.5313 -4.3111 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:37:45 Heat of formation + Delta-G solvation = 74.521385 kcal Electronic energy + Delta-G solvation = -23191.422478 eV Core-core repulsion = 19616.083540 eV Total energy + Delta-G solvation = -3575.338938 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.07167 -41.32937 -39.80688 -38.77480 -37.18759 -35.24132 -33.61340 -31.71871 -30.96924 -28.58473 -26.98242 -26.78736 -26.02119 -23.78735 -22.12662 -22.04510 -21.54947 -20.92069 -20.15768 -18.99328 -18.29151 -18.13477 -17.71496 -17.07650 -16.47369 -16.37334 -16.23792 -15.91318 -15.68797 -15.35751 -15.00606 -14.58245 -14.44241 -14.24255 -14.07229 -13.69539 -13.64124 -13.59608 -13.50018 -13.33495 -12.87696 -12.66432 -12.43507 -12.33014 -11.90289 -11.84856 -11.56821 -11.47775 -11.05693 -10.77720 -10.34152 -10.21135 -9.97552 -9.48152 -9.43911 -5.05461 -0.34192 0.39573 0.69333 0.80024 1.00571 1.22138 1.55866 1.67268 1.90770 1.95231 2.08950 2.22832 3.28825 3.35454 3.47696 3.51694 3.59386 3.73382 3.88074 3.92134 3.98170 4.08581 4.18318 4.27452 4.33797 4.49064 4.50568 4.59877 4.65054 4.70713 4.74436 4.79320 4.89939 4.94549 4.99124 5.01398 5.15111 5.16085 5.19448 5.50489 5.74923 6.19910 6.39350 6.45838 6.78186 7.13723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.049 4.049 3 Si 0.734 3.266 4 C -0.247 4.247 5 C -0.079 4.079 6 C -0.185 4.185 7 C 0.573 3.427 8 O -0.590 6.590 9 N -0.696 5.696 10 C 0.117 3.883 11 H 0.085 0.915 12 C -0.141 4.141 13 C -0.115 4.115 14 H 0.079 0.921 15 C 0.140 3.860 16 N -0.375 5.375 17 C 0.054 3.946 18 C -0.295 4.295 19 C 0.027 3.973 20 N -0.339 5.339 21 C -0.114 4.114 22 C -0.187 4.187 23 S 0.256 5.744 24 H 0.388 0.612 25 H 0.128 0.872 26 H -0.250 1.250 27 H -0.278 1.278 28 H 0.128 0.872 29 H 0.418 0.582 30 H 0.043 0.957 31 H 0.108 0.892 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.208 0.792 35 H 0.160 0.840 36 H 0.194 0.806 37 H 0.126 0.874 38 H 0.083 0.917 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.748 8.051 -5.675 11.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.159 4.159 3 Si 0.634 3.366 4 C -0.364 4.364 5 C -0.108 4.108 6 C -0.203 4.203 7 C 0.361 3.639 8 O -0.471 6.471 9 N -0.348 5.348 10 C 0.012 3.988 11 H 0.103 0.897 12 C -0.179 4.179 13 C -0.135 4.135 14 H 0.097 0.903 15 C 0.020 3.980 16 N -0.158 5.158 17 C -0.092 4.092 18 C -0.324 4.324 19 C -0.158 4.158 20 N -0.162 5.162 21 C -0.153 4.153 22 C -0.325 4.325 23 S 0.523 5.477 24 H 0.238 0.762 25 H 0.146 0.854 26 H -0.175 1.175 27 H -0.203 1.203 28 H 0.146 0.854 29 H 0.257 0.743 30 H 0.062 0.938 31 H 0.126 0.874 32 H 0.150 0.850 33 H 0.113 0.887 34 H 0.224 0.776 35 H 0.177 0.823 36 H 0.211 0.789 37 H 0.144 0.856 38 H 0.102 0.898 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 7.744 9.083 -3.955 12.574 hybrid contribution -2.612 -1.811 -0.800 3.278 sum 5.132 7.272 -4.755 10.091 Atomic orbital electron populations 1.86612 1.18275 1.80415 1.50091 1.24773 0.83265 1.11550 0.96353 0.94460 0.90174 0.71955 0.79992 1.24831 1.08736 0.98689 1.04109 1.20975 0.99261 0.95039 0.95561 1.20071 1.06977 0.94678 0.98527 1.18024 0.78291 0.86847 0.80755 1.90799 1.42730 1.52113 1.61472 1.45640 1.52563 1.14053 1.22512 1.22423 0.98294 0.84037 0.94027 0.89717 1.23580 0.97344 1.00175 0.96845 1.22550 0.97969 0.99451 0.93517 0.90267 1.22030 0.90299 0.96237 0.89406 1.48974 1.29513 1.05640 1.31632 1.23184 0.92086 1.01629 0.92309 1.21870 1.08481 0.92371 1.09696 1.24310 0.95167 1.01283 0.95013 1.77270 1.20860 0.92906 1.25132 1.23308 0.95487 1.01768 0.94690 1.26211 1.02404 0.98028 1.05866 1.82930 1.44112 1.10005 1.10682 0.76226 0.85444 1.17451 1.20350 0.85444 0.74337 0.93842 0.87360 0.85032 0.88730 0.77564 0.82257 0.78925 0.85631 0.89837 0.77419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.70 12.85 -148.98 -1.91 -3.62 16 2 C -0.05 0.04 2.95 71.24 0.21 0.25 16 3 Si 0.73 -2.97 30.91 68.60 2.12 -0.85 16 4 C -0.25 0.12 5.68 24.51 0.14 0.26 16 5 C -0.08 -0.38 9.91 22.67 0.22 -0.15 16 6 C -0.18 -0.37 5.98 -19.87 -0.12 -0.48 16 7 C 0.57 3.61 7.79 86.60 0.67 4.29 16 8 O -0.59 -10.09 16.41 -4.14 -0.07 -10.16 16 9 N -0.70 1.72 5.33 -443.52 -2.36 -0.64 16 10 C 0.12 -0.10 4.21 45.52 0.19 0.09 16 11 H 0.08 0.54 7.50 -2.39 -0.02 0.52 16 12 C -0.14 0.24 7.44 31.18 0.23 0.47 16 13 C -0.12 0.37 3.87 -10.21 -0.04 0.33 16 14 H 0.08 0.28 7.97 -2.39 -0.02 0.26 16 15 C 0.14 -0.78 6.35 86.38 0.55 -0.23 16 16 N -0.38 -0.75 3.68 -348.07 -1.28 -2.03 16 17 C 0.05 -0.04 11.45 83.54 0.96 0.92 16 18 C -0.29 -0.66 10.80 21.99 0.24 -0.43 16 19 C 0.03 0.15 12.03 85.23 1.02 1.18 16 20 N -0.34 -2.90 12.28 -57.02 -0.70 -3.60 16 21 C -0.11 0.87 7.39 31.12 0.23 1.10 16 22 C -0.19 1.20 10.38 67.30 0.70 1.90 16 23 S 0.26 -1.71 20.18 -56.49 -1.14 -2.85 16 24 H 0.39 -1.23 8.70 -74.06 -0.64 -1.88 16 25 H 0.13 -0.20 7.96 -2.39 -0.02 -0.21 16 26 H -0.25 0.56 7.11 99.48 0.71 1.27 16 27 H -0.28 -0.89 7.11 99.48 0.71 -0.18 16 28 H 0.13 1.23 8.06 -2.91 -0.02 1.21 16 29 H 0.42 -4.56 7.21 -92.71 -0.67 -5.23 16 30 H 0.04 0.21 8.14 -2.38 -0.02 0.19 16 31 H 0.11 -0.68 7.90 -2.38 -0.02 -0.70 16 32 H 0.13 -1.68 7.78 -2.39 -0.02 -1.70 16 33 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 34 H 0.21 -1.88 8.06 -2.91 -0.02 -1.90 16 35 H 0.16 -0.25 8.06 -2.91 -0.02 -0.27 16 36 H 0.19 0.17 8.06 -2.91 -0.02 0.15 16 37 H 0.13 -1.79 8.07 -2.39 -0.02 -1.81 16 38 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 39 H 0.21 -3.10 7.01 -2.91 -0.02 -3.12 16 Total: 0.00 -28.58 348.85 -0.32 -28.90 By element: Atomic # 1 Polarization: -14.44 SS G_CDS: -0.18 Total: -14.62 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 5.21 Total: 9.48 kcal Atomic # 7 Polarization: -1.93 SS G_CDS: -4.34 Total: -6.28 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -1.98 Total: -13.78 kcal Atomic # 14 Polarization: -2.97 SS G_CDS: 2.12 Total: -0.85 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -1.14 Total: -2.85 kcal Total: -28.58 -0.32 -28.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.424 kcal (2) G-P(sol) polarization free energy of solvation -28.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds