Wall clock time and date at job start Sun Mar 7 2021 02:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86300 * 109.46672 * 2 1 4 4 C 1.50699 * 109.47376 * 239.99966 * 2 1 3 5 5 C 1.34232 * 126.50125 * 105.31445 * 4 2 1 6 6 N 1.36834 * 109.93815 * 180.17028 * 5 4 2 7 7 C 1.46498 * 125.06445 * 179.81451 * 6 5 4 8 8 C 1.50697 * 109.47228 * 264.69578 * 7 6 5 9 9 O 1.21280 * 119.99897 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00374 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00413 * 180.02562 * 10 8 7 12 12 H 1.09003 * 112.85333 * 336.19168 * 11 10 8 13 13 C 1.53789 * 113.69484 * 107.46106 * 11 10 8 14 14 C 1.53778 * 87.08118 * 139.99478 * 13 11 10 15 15 H 1.08999 * 113.69349 * 89.12851 * 14 13 11 16 16 C 1.53000 * 113.60995 * 220.02008 * 14 13 11 17 17 N 1.46503 * 109.47420 * 272.49532 * 16 14 13 18 18 C 1.34940 * 126.03757 * 124.99460 * 17 16 14 19 19 C 1.35317 * 107.74438 * 179.77616 * 18 17 16 20 20 C 1.39872 * 107.92021 * 0.23195 * 19 18 17 21 21 N 1.30838 * 108.20312 * 359.97438 * 20 19 18 22 22 C 1.53778 * 87.08252 * 334.56648 * 14 13 11 23 23 C 1.37698 * 109.87134 * 359.54528 * 6 5 4 24 24 C 1.39080 * 133.51087 * 180.23981 * 23 6 5 25 25 C 1.37795 * 119.77707 * 180.02562 * 24 23 6 26 26 C 1.38790 * 120.66674 * 359.97438 * 25 24 23 27 27 C 1.36663 * 120.52444 * 0.02562 * 26 25 24 28 28 C 1.39591 * 119.76668 * 359.97438 * 27 26 25 29 29 H 0.96702 * 114.00287 * 299.99591 * 1 2 3 30 30 H 1.09004 * 109.47283 * 119.99288 * 2 1 3 31 31 H 1.48508 * 109.99786 * 178.68262 * 3 2 1 32 32 H 1.48501 * 110.00133 * 299.99556 * 3 2 1 33 33 H 1.08000 * 125.03099 * 0.02562 * 5 4 2 34 34 H 1.08995 * 109.47155 * 144.69017 * 7 6 5 35 35 H 1.09003 * 109.46899 * 24.69231 * 7 6 5 36 36 H 0.97006 * 119.99804 * 359.97438 * 10 8 7 37 37 H 1.08997 * 113.61385 * 25.44359 * 13 11 10 38 38 H 1.09002 * 113.61087 * 254.54119 * 13 11 10 39 39 H 1.09005 * 109.47317 * 152.49754 * 16 14 13 40 40 H 1.08999 * 109.47532 * 32.50057 * 16 14 13 41 41 H 1.08002 * 126.13053 * 0.04913 * 18 17 16 42 42 H 1.08003 * 126.04109 * 180.21059 * 19 18 17 43 43 H 1.08001 * 125.89461 * 180.02562 * 20 19 18 44 44 H 1.09005 * 113.61548 * 139.98412 * 22 14 13 45 45 H 1.08999 * 113.61631 * 270.88757 * 22 14 13 46 46 H 1.07997 * 120.11193 * 0.05260 * 24 23 6 47 47 H 1.07997 * 119.66736 * 180.02562 * 25 24 23 48 48 H 1.07994 * 119.73971 * 179.97438 * 26 25 24 49 49 H 1.07998 * 120.11521 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.4663 -0.1380 -2.3204 6 7 2.8029 -1.0990 -3.2345 7 6 3.4077 -0.8404 -4.5435 8 6 2.3281 -0.7841 -5.5934 9 8 1.1677 -0.9446 -5.2792 10 7 2.6520 -0.5563 -6.8816 11 6 1.6024 -0.5009 -7.9021 12 1 0.7021 -1.0432 -7.6132 13 6 1.3251 0.9177 -8.4271 14 6 1.1908 0.2895 -9.8243 15 1 0.1785 -0.0370 -10.0623 16 6 1.8212 1.1294 -10.9370 17 7 0.8404 2.0981 -11.4330 18 6 1.0103 3.4350 -11.5028 19 6 -0.1209 3.9680 -12.0198 20 6 -1.0147 2.9215 -12.2697 21 7 -0.4404 1.8003 -11.9159 22 6 2.0999 -0.8422 -9.3167 23 6 2.4941 -2.3457 -2.7382 24 6 2.6288 -3.6362 -3.2392 25 6 2.2147 -4.7107 -2.4824 26 6 1.6641 -4.5193 -1.2229 27 6 1.5224 -3.2600 -0.7113 28 6 1.9352 -2.1571 -1.4608 29 1 -0.3934 0.4416 0.7651 30 1 1.7924 -0.5137 0.8901 31 1 3.5345 1.7704 0.0321 32 1 1.5614 2.4679 -1.2085 33 1 2.6077 0.9240 -2.4568 34 1 4.1077 -1.6403 -4.7847 35 1 3.9386 0.1112 -4.5169 36 1 3.5801 -0.4283 -7.1330 37 1 2.1757 1.5926 -8.3317 38 1 0.3972 1.3488 -8.0512 39 1 2.1321 0.4770 -11.7530 40 1 2.6892 1.6594 -10.5449 41 1 1.8928 3.9812 -11.2041 42 1 -0.3019 5.0163 -12.2062 43 1 -2.0070 3.0216 -12.6840 44 1 1.7974 -1.8320 -9.6589 45 1 3.1623 -0.6485 -9.4644 46 1 3.0569 -3.7955 -4.2178 47 1 2.3206 -5.7120 -2.8730 48 1 1.3442 -5.3723 -0.6429 49 1 1.0927 -3.1187 0.2693 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:37:59 Heat of formation + Delta-G solvation = 115.628278 kcal Electronic energy + Delta-G solvation = -31916.592438 eV Core-core repulsion = 27620.930353 eV Total energy + Delta-G solvation = -4295.662086 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.66237 -42.10204 -41.18794 -39.62544 -38.11934 -37.62294 -35.31024 -34.32583 -33.55563 -31.55172 -31.01997 -30.38964 -29.37488 -28.28652 -26.84234 -25.90469 -24.34296 -23.72851 -22.73962 -22.08788 -21.83901 -21.58805 -20.69140 -20.49580 -18.61093 -18.47809 -18.31561 -18.14900 -17.81466 -17.12636 -16.56653 -16.52508 -16.39222 -16.13614 -15.76042 -15.58271 -15.21193 -15.02819 -14.93052 -14.83372 -14.56245 -14.51854 -14.29468 -14.19091 -13.72439 -13.64721 -13.57477 -13.44853 -13.37212 -12.93552 -12.78296 -12.66711 -12.53752 -12.41480 -12.06193 -11.95276 -11.82560 -11.62017 -11.53942 -11.24360 -10.65517 -10.38021 -10.23338 -10.19078 -9.51536 -9.27721 -8.75142 -4.97085 0.02350 0.55063 0.96816 1.22828 1.30700 1.32273 1.56180 1.63963 1.68747 1.91826 1.96835 2.08112 2.86061 3.29205 3.40406 3.42182 3.45104 3.50564 3.58427 3.66006 3.68870 3.80687 3.85708 3.96198 3.98602 4.04930 4.12219 4.16331 4.21111 4.27715 4.33091 4.45180 4.50005 4.54260 4.58924 4.59826 4.67995 4.69385 4.73003 4.82111 4.85250 4.89613 4.94766 5.05541 5.10197 5.12961 5.42405 5.42643 5.56747 5.63550 5.64437 5.71329 6.03101 6.13714 6.16313 6.36807 6.74492 6.97687 7.03736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.572 6.572 2 C -0.053 4.053 3 Si 0.789 3.211 4 C -0.181 4.181 5 C 0.052 3.948 6 N -0.468 5.468 7 C 0.087 3.913 8 C 0.489 3.511 9 O -0.576 6.576 10 N -0.696 5.696 11 C 0.118 3.882 12 H 0.079 0.921 13 C -0.140 4.140 14 C -0.117 4.117 15 H 0.076 0.924 16 C 0.141 3.859 17 N -0.376 5.376 18 C 0.055 3.945 19 C -0.294 4.294 20 C 0.027 3.973 21 N -0.340 5.340 22 C -0.113 4.113 23 C 0.089 3.911 24 C -0.136 4.136 25 C -0.102 4.102 26 C -0.151 4.151 27 C -0.082 4.082 28 C -0.120 4.120 29 H 0.398 0.602 30 H 0.080 0.920 31 H -0.280 1.280 32 H -0.295 1.295 33 H 0.175 0.825 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.424 0.576 37 H 0.111 0.889 38 H 0.039 0.961 39 H 0.094 0.906 40 H 0.133 0.867 41 H 0.208 0.792 42 H 0.160 0.840 43 H 0.194 0.806 44 H 0.080 0.920 45 H 0.128 0.872 46 H 0.134 0.866 47 H 0.150 0.850 48 H 0.144 0.856 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.452 3.499 -0.285 10.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.381 6.381 2 C -0.162 4.162 3 Si 0.693 3.307 4 C -0.188 4.188 5 C -0.073 4.073 6 N -0.151 5.151 7 C -0.037 4.037 8 C 0.275 3.725 9 O -0.455 6.455 10 N -0.349 5.349 11 C 0.013 3.987 12 H 0.097 0.903 13 C -0.178 4.178 14 C -0.136 4.136 15 H 0.095 0.905 16 C 0.021 3.979 17 N -0.158 5.158 18 C -0.092 4.092 19 C -0.324 4.324 20 C -0.158 4.158 21 N -0.163 5.163 22 C -0.152 4.152 23 C -0.016 4.016 24 C -0.157 4.157 25 C -0.121 4.121 26 C -0.170 4.170 27 C -0.101 4.101 28 C -0.124 4.124 29 H 0.249 0.751 30 H 0.098 0.902 31 H -0.206 1.206 32 H -0.223 1.223 33 H 0.192 0.808 34 H 0.169 0.831 35 H 0.175 0.825 36 H 0.263 0.737 37 H 0.130 0.870 38 H 0.058 0.942 39 H 0.112 0.888 40 H 0.151 0.849 41 H 0.225 0.775 42 H 0.178 0.822 43 H 0.211 0.789 44 H 0.099 0.901 45 H 0.146 0.854 46 H 0.152 0.848 47 H 0.168 0.832 48 H 0.162 0.838 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.340 2.358 -1.189 9.706 hybrid contribution -0.316 0.434 -0.535 0.757 sum 9.024 2.792 -1.724 9.602 Atomic orbital electron populations 1.86516 1.18240 1.82418 1.50917 1.24357 0.85034 1.11189 0.95577 0.94114 0.77488 0.73957 0.85136 1.20060 1.09020 0.91959 0.97805 1.21709 1.02000 0.94286 0.89327 1.43376 1.53651 1.03883 1.14167 1.22007 0.93935 1.09046 0.78759 1.21499 0.90322 0.75841 0.84842 1.90819 1.22647 1.50225 1.81769 1.45734 1.11647 1.71954 1.05562 1.22354 0.91775 0.97357 0.87246 0.90301 1.23543 1.02170 0.96985 0.95129 1.22523 1.00370 0.97283 0.93465 0.90519 1.22030 0.88655 0.90504 0.96746 1.48978 1.12023 1.06263 1.48585 1.23191 1.01555 0.84327 1.00105 1.21881 0.95338 1.01381 1.13770 1.24318 1.01396 0.90353 0.99691 1.77273 0.93533 1.24964 1.20509 1.23307 1.01628 0.98659 0.91582 1.18492 1.01876 0.86922 0.94285 1.20272 1.05365 0.88835 1.01203 1.21202 0.97637 0.99020 0.94276 1.20984 1.02006 0.97087 0.96925 1.20502 0.98480 0.91345 0.99765 1.19367 1.04248 0.93508 0.95306 0.75127 0.90223 1.20635 1.22303 0.80815 0.83150 0.82505 0.73689 0.87037 0.94173 0.88789 0.84928 0.77498 0.82189 0.78915 0.90123 0.85426 0.84767 0.83186 0.83826 0.85429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -3.80 12.86 -148.98 -1.92 -5.71 16 2 C -0.05 -0.26 3.05 71.24 0.22 -0.04 16 3 Si 0.79 -0.27 30.78 68.60 2.11 1.84 16 4 C -0.18 -2.06 5.61 -18.63 -0.10 -2.17 16 5 C 0.05 0.47 9.89 83.00 0.82 1.29 16 6 N -0.47 -3.30 2.27 -520.01 -1.18 -4.48 16 7 C 0.09 -0.29 6.48 85.63 0.56 0.27 16 8 C 0.49 1.27 7.90 87.66 0.69 1.96 16 9 O -0.58 -9.26 16.02 -3.03 -0.05 -9.31 16 10 N -0.70 3.77 5.36 -440.04 -2.36 1.42 16 11 C 0.12 -0.20 4.24 45.52 0.19 0.00 16 12 H 0.08 0.53 7.46 -2.39 -0.02 0.51 16 13 C -0.14 0.31 7.43 31.12 0.23 0.54 16 14 C -0.12 0.37 3.87 -10.27 -0.04 0.33 16 15 H 0.08 0.31 7.96 -2.39 -0.02 0.29 16 16 C 0.14 -0.78 6.35 86.38 0.55 -0.23 16 17 N -0.38 -0.80 3.68 -348.05 -1.28 -2.08 16 18 C 0.05 -0.04 11.45 83.54 0.96 0.92 16 19 C -0.29 -0.68 10.80 21.99 0.24 -0.44 16 20 C 0.03 0.16 12.03 85.24 1.03 1.18 16 21 N -0.34 -3.00 12.26 -57.02 -0.70 -3.70 16 22 C -0.11 0.90 7.39 31.12 0.23 1.13 16 23 C 0.09 0.98 6.80 39.03 0.27 1.25 16 24 C -0.14 -1.00 10.00 22.37 0.22 -0.78 16 25 C -0.10 -0.60 10.01 22.30 0.22 -0.37 16 26 C -0.15 -1.07 9.97 22.03 0.22 -0.85 16 27 C -0.08 -0.87 10.05 22.23 0.22 -0.65 16 28 C -0.12 -1.61 6.35 -20.20 -0.13 -1.74 16 29 H 0.40 -2.01 8.74 -74.06 -0.65 -2.66 16 30 H 0.08 0.14 7.96 -2.38 -0.02 0.12 16 31 H -0.28 -0.95 7.11 99.48 0.71 -0.24 16 32 H -0.30 -1.85 7.05 99.48 0.70 -1.15 16 33 H 0.17 0.81 6.30 -2.91 -0.02 0.79 16 34 H 0.15 -1.48 8.14 -2.39 -0.02 -1.50 16 35 H 0.16 -1.73 8.12 -2.39 -0.02 -1.75 16 36 H 0.42 -6.13 8.73 -92.70 -0.81 -6.94 16 37 H 0.11 -0.82 7.90 -2.39 -0.02 -0.84 16 38 H 0.04 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.09 -0.61 8.14 -2.38 -0.02 -0.63 16 40 H 0.13 -1.72 7.77 -2.39 -0.02 -1.74 16 41 H 0.21 -1.91 8.06 -2.91 -0.02 -1.93 16 42 H 0.16 -0.25 8.06 -2.91 -0.02 -0.28 16 43 H 0.19 0.21 8.06 -2.91 -0.02 0.19 16 44 H 0.08 -0.51 8.14 -2.38 -0.02 -0.53 16 45 H 0.13 -1.89 8.08 -2.39 -0.02 -1.91 16 46 H 0.13 0.29 8.06 -2.91 -0.02 0.26 16 47 H 0.15 0.00 8.06 -2.91 -0.02 -0.03 16 48 H 0.14 0.28 8.06 -2.91 -0.02 0.25 16 49 H 0.13 1.00 8.06 -2.91 -0.02 0.98 16 Total: 0.00 -39.75 415.03 0.78 -38.97 By element: Atomic # 1 Polarization: -18.10 SS G_CDS: -0.44 Total: -18.54 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 6.59 Total: 1.59 kcal Atomic # 7 Polarization: -3.32 SS G_CDS: -5.52 Total: -8.84 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -1.96 Total: -15.02 kcal Atomic # 14 Polarization: -0.27 SS G_CDS: 2.11 Total: 1.84 kcal Total: -39.75 0.78 -38.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.599 kcal (2) G-P(sol) polarization free energy of solvation -39.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds