Wall clock time and date at job start Sun Mar 7 2021 02:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36777 * 125.80136 * 2 1 4 4 C 1.47261 * 126.93813 * 359.97438 * 3 2 1 5 5 O 1.21626 * 120.00597 * 359.71197 * 4 3 2 6 6 N 1.34782 * 119.99963 * 179.70613 * 4 3 2 7 7 C 1.46492 * 120.00298 * 179.97438 * 6 4 3 8 8 H 1.09009 * 112.84927 * 23.80670 * 7 6 4 9 9 C 1.53779 * 113.61690 * 155.00607 * 7 6 4 10 10 C 1.53776 * 87.08683 * 140.06830 * 9 7 6 11 11 H 1.08996 * 113.61649 * 89.19948 * 10 9 7 12 12 C 1.52997 * 113.61673 * 220.02123 * 10 9 7 13 13 N 1.46495 * 109.47240 * 183.46526 * 12 10 9 14 14 C 1.34957 * 126.03329 * 125.02128 * 13 12 10 15 15 C 1.35317 * 107.74055 * 179.97438 * 14 13 12 16 16 C 1.39868 * 107.92640 * 0.02562 * 15 14 13 17 17 N 1.30844 * 108.19764 * 359.97438 * 16 15 14 18 18 C 1.53792 * 87.16909 * 334.60913 * 10 9 7 19 19 C 1.46679 * 106.11761 * 179.72153 * 3 2 1 20 20 C 1.34486 * 106.33289 * 0.24136 * 19 3 2 21 21 C 1.50703 * 125.57512 * 180.02562 * 20 19 3 22 22 O 1.42902 * 109.46646 * 64.99971 * 21 20 19 23 23 Si 1.86295 * 109.47446 * 184.99847 * 21 20 19 24 24 N 1.34659 * 125.80754 * 180.13152 * 2 1 3 25 25 H 1.08996 * 109.47408 * 90.00151 * 1 2 3 26 26 H 1.08999 * 109.46882 * 209.99922 * 1 2 3 27 27 H 1.09001 * 109.46986 * 330.00010 * 1 2 3 28 28 H 0.97005 * 119.99351 * 0.02562 * 6 4 3 29 29 H 1.09002 * 113.61108 * 25.51344 * 9 7 6 30 30 H 1.09010 * 113.68860 * 254.63056 * 9 7 6 31 31 H 1.09000 * 109.47373 * 63.46378 * 12 10 9 32 32 H 1.09005 * 109.47107 * 303.46886 * 12 10 9 33 33 H 1.07995 * 126.12756 * 0.02562 * 14 13 12 34 34 H 1.08004 * 126.03278 * 180.02562 * 15 14 13 35 35 H 1.07995 * 125.89923 * 180.25722 * 16 15 14 36 36 H 1.09001 * 113.61089 * 139.94128 * 18 10 9 37 37 H 1.08991 * 113.61131 * 270.84260 * 18 10 9 38 38 H 1.07999 * 126.83899 * 180.25697 * 19 3 2 39 39 H 1.08996 * 109.47303 * 305.00609 * 21 20 19 40 40 H 0.96702 * 114.00168 * 60.00648 * 22 21 20 41 41 H 1.48498 * 110.00080 * 180.02562 * 23 21 20 42 42 H 1.48499 * 110.00186 * 301.32347 * 23 21 20 43 43 H 0.97000 * 124.84247 * 0.02820 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6839 2.7840 -0.0063 6 7 2.7849 3.5055 0.0055 7 6 2.3503 4.9045 0.0044 8 1 1.3448 5.0357 0.4044 9 6 3.3837 5.8711 0.6065 10 6 3.0066 6.8502 -0.5178 11 1 2.1816 7.5142 -0.2600 12 6 4.2051 7.5940 -1.1103 13 7 3.7365 8.5572 -2.1097 14 6 4.0008 9.8806 -2.1219 15 6 3.3887 10.4134 -3.2048 16 6 2.7273 9.3804 -3.8770 17 7 2.9353 8.2673 -3.2216 18 6 2.5762 5.6228 -1.3384 19 6 3.6882 0.6153 0.0068 20 6 3.6096 -0.7273 0.0049 21 6 4.7820 -1.6742 0.0107 22 8 5.5031 -1.5317 1.2362 23 14 4.1667 -3.4254 -0.1478 24 7 2.2948 -1.0921 -0.0025 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 3.7310 3.2915 0.0099 29 1 4.4096 5.5081 0.5436 30 1 3.1214 6.2280 1.6025 31 1 4.8791 6.8793 -1.5826 32 1 4.7337 8.1221 -0.3166 33 1 4.5950 10.4179 -1.3977 34 1 3.4075 11.4526 -3.4981 35 1 2.1490 9.4831 -4.7833 36 1 1.6617 5.7789 -1.9105 37 1 3.3809 5.1919 -1.9340 38 1 4.5890 1.2110 0.0126 39 1 5.4399 -1.4429 -0.8270 40 1 4.9785 -1.7225 2.0258 41 1 5.3133 -4.3690 -0.1428 42 1 3.2435 -3.7427 0.9712 43 1 1.9734 -2.0073 -0.0050 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_9865296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:38:03 Heat of formation + Delta-G solvation = 82.681563 kcal Electronic energy + Delta-G solvation = -25614.791451 eV Core-core repulsion = 21857.916729 eV Total energy + Delta-G solvation = -3756.874722 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.50521 -42.01798 -40.82656 -39.20348 -37.88784 -35.09932 -33.58395 -32.82775 -32.00558 -30.91826 -29.01320 -28.45179 -26.69321 -25.84549 -24.41480 -22.86791 -21.89284 -21.65760 -21.28393 -21.20493 -20.16708 -18.76185 -18.22390 -17.81914 -17.13999 -16.92275 -16.60800 -16.40484 -15.92407 -15.76578 -15.37081 -15.20115 -15.02023 -14.73986 -14.59832 -14.52895 -13.99165 -13.91468 -13.85580 -13.52341 -13.45268 -13.39852 -13.36386 -12.90765 -12.76590 -12.63068 -12.18269 -12.14355 -11.81239 -11.58578 -11.33423 -10.99272 -10.61804 -10.31846 -10.11001 -9.79945 -9.46591 -9.17721 -5.05396 0.67884 1.03686 1.12187 1.26302 1.44108 1.69874 1.80777 1.98191 2.04106 2.43676 2.50060 3.33205 3.37079 3.48943 3.64631 3.70700 3.81132 3.86105 4.01455 4.06425 4.10890 4.21057 4.25655 4.34066 4.40823 4.49453 4.54339 4.69911 4.72005 4.73682 4.78018 4.79227 4.83003 4.94103 5.01226 5.04316 5.06610 5.17986 5.19270 5.31961 5.62218 5.68226 5.78133 5.84684 6.22030 6.38595 6.43965 6.66166 6.82184 7.34738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.117 3.883 3 C -0.265 4.265 4 C 0.585 3.415 5 O -0.590 6.590 6 N -0.704 5.704 7 C 0.118 3.882 8 H 0.090 0.910 9 C -0.115 4.115 10 C -0.110 4.110 11 H 0.084 0.916 12 C 0.139 3.861 13 N -0.377 5.377 14 C 0.052 3.948 15 C -0.293 4.293 16 C 0.025 3.975 17 N -0.331 5.331 18 C -0.132 4.132 19 C -0.135 4.135 20 C -0.021 4.021 21 C -0.046 4.046 22 O -0.540 6.540 23 Si 0.753 3.247 24 N -0.535 5.535 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.412 0.588 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.131 0.869 33 H 0.207 0.793 34 H 0.160 0.840 35 H 0.193 0.807 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.159 0.841 39 H 0.140 0.860 40 H 0.387 0.613 41 H -0.293 1.293 42 H -0.274 1.274 43 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.011 -1.341 1.332 4.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.003 4.003 3 C -0.275 4.275 4 C 0.376 3.624 5 O -0.472 6.472 6 N -0.355 5.355 7 C 0.012 3.988 8 H 0.108 0.892 9 C -0.154 4.154 10 C -0.129 4.129 11 H 0.102 0.898 12 C 0.019 3.981 13 N -0.160 5.160 14 C -0.094 4.094 15 C -0.322 4.322 16 C -0.161 4.161 17 N -0.153 5.153 18 C -0.171 4.171 19 C -0.159 4.159 20 C -0.129 4.129 21 C -0.156 4.156 22 O -0.347 6.347 23 Si 0.657 3.343 24 N -0.135 5.135 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.249 0.751 29 H 0.133 0.867 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.149 0.851 33 H 0.224 0.776 34 H 0.178 0.822 35 H 0.210 0.790 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.177 0.823 39 H 0.158 0.842 40 H 0.236 0.764 41 H -0.220 1.220 42 H -0.200 1.200 43 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 3.468 -3.291 1.456 4.997 hybrid contribution 0.302 0.898 0.852 1.274 sum 3.769 -2.393 2.308 5.026 Atomic orbital electron populations 1.20605 0.86222 1.04433 1.04135 1.20553 0.94253 0.85680 0.99767 1.20203 0.94307 0.91632 1.21364 1.17707 0.85082 0.85159 0.74461 1.90724 1.18319 1.85051 1.53134 1.45634 1.09961 1.05087 1.74773 1.22477 0.99518 0.79433 0.97343 0.89186 1.23289 1.00157 0.93646 0.98300 1.22484 0.98012 0.95298 0.97136 0.89789 1.22010 0.95785 0.91393 0.88906 1.48998 1.39260 1.07168 1.20527 1.23204 1.00881 0.84665 1.00655 1.21860 1.08785 1.01662 0.99940 1.24324 1.00344 0.90608 1.00795 1.77338 1.14149 1.24665 0.99156 1.23403 1.01406 0.95775 0.96475 1.21972 0.95315 0.93189 1.05467 1.20628 0.84637 0.95565 1.12113 1.24618 0.93247 1.07484 0.90262 1.86630 1.41058 1.91030 1.16022 0.94521 0.80356 0.72026 0.87435 1.41702 1.05290 1.08734 1.57788 0.89622 0.89208 0.90210 0.75060 0.86724 0.89236 0.89034 0.85115 0.77628 0.82238 0.79007 0.93700 0.89417 0.82304 0.84219 0.76376 1.22001 1.20042 0.73316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.10 9.88 71.24 0.70 0.60 16 2 C 0.12 0.29 7.18 41.78 0.30 0.59 16 3 C -0.27 -1.36 6.29 -19.04 -0.12 -1.48 16 4 C 0.59 5.17 7.81 86.61 0.68 5.84 16 5 O -0.59 -9.49 14.41 -4.11 -0.06 -9.55 16 6 N -0.70 -1.64 5.36 -443.17 -2.37 -4.02 16 7 C 0.12 0.25 4.24 45.58 0.19 0.45 16 8 H 0.09 0.68 7.46 -2.38 -0.02 0.66 16 9 C -0.12 0.61 7.39 31.12 0.23 0.84 16 10 C -0.11 0.20 3.82 -10.27 -0.04 0.16 16 11 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 12 C 0.14 -0.55 6.33 86.38 0.55 0.00 16 13 N -0.38 -1.10 3.68 -348.07 -1.28 -2.38 16 14 C 0.05 0.01 11.45 83.54 0.96 0.96 16 15 C -0.29 -0.78 10.80 21.99 0.24 -0.54 16 16 C 0.02 0.15 12.03 85.23 1.03 1.17 16 17 N -0.33 -2.97 12.42 -57.02 -0.71 -3.68 16 18 C -0.13 -0.39 7.45 31.18 0.23 -0.16 16 19 C -0.14 -0.08 10.45 23.62 0.25 0.17 16 20 C -0.02 0.04 6.09 40.98 0.25 0.29 16 21 C -0.05 0.20 2.98 71.24 0.21 0.41 16 22 O -0.54 0.64 12.88 -148.98 -1.92 -1.28 16 23 Si 0.75 -4.53 30.96 68.60 2.12 -2.40 16 24 N -0.53 1.47 5.41 -171.07 -0.93 0.54 16 25 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 26 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.08 0.52 6.47 -2.39 -0.02 0.51 16 28 H 0.41 -1.32 7.85 -92.70 -0.73 -2.05 16 29 H 0.11 -1.12 8.08 -2.39 -0.02 -1.14 16 30 H 0.09 -0.56 8.14 -2.38 -0.02 -0.58 16 31 H 0.09 -0.44 7.87 -2.39 -0.02 -0.46 16 32 H 0.13 -1.38 8.07 -2.38 -0.02 -1.39 16 33 H 0.21 -1.67 8.06 -2.91 -0.02 -1.70 16 34 H 0.16 -0.20 8.06 -2.91 -0.02 -0.22 16 35 H 0.19 0.26 8.06 -2.91 -0.02 0.24 16 36 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.09 0.21 7.92 -2.39 -0.02 0.19 16 38 H 0.16 -0.48 7.70 -2.91 -0.02 -0.51 16 39 H 0.14 -0.89 7.96 -2.39 -0.02 -0.91 16 40 H 0.39 -2.41 8.70 -74.06 -0.64 -3.06 16 41 H -0.29 -0.64 7.11 99.48 0.71 0.07 16 42 H -0.27 0.82 7.11 99.48 0.71 1.53 16 43 H 0.43 -3.41 6.72 -92.71 -0.62 -4.03 16 Total: 0.00 -25.80 363.20 -0.39 -26.19 By element: Atomic # 1 Polarization: -11.84 SS G_CDS: -0.90 Total: -12.74 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 5.65 Total: 9.32 kcal Atomic # 7 Polarization: -4.25 SS G_CDS: -5.29 Total: -9.54 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.98 Total: -10.83 kcal Atomic # 14 Polarization: -4.53 SS G_CDS: 2.12 Total: -2.40 kcal Total: -25.80 -0.39 -26.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_9865296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.871 kcal (2) G-P(sol) polarization free energy of solvation -25.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds