Wall clock time and date at job start Sun Mar 7 2021 04:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42905 * 109.46909 * 2 1 4 4 C 1.35899 * 116.99622 * 84.83139 * 3 2 1 5 5 C 1.38734 * 120.05398 * 174.34665 * 4 3 2 6 6 C 1.38151 * 119.94349 * 179.74690 * 5 4 3 7 7 C 1.38264 * 120.05281 * 0.50478 * 6 5 4 8 8 C 1.50699 * 119.94461 * 179.74572 * 7 6 5 9 9 O 1.42900 * 109.47322 * 120.02637 * 8 7 6 10 10 Si 1.86305 * 109.46999 * 0.02674 * 8 7 6 11 11 C 1.38263 * 120.11467 * 359.77714 * 7 6 5 12 12 C 1.38149 * 120.05483 * 359.96874 * 11 7 6 13 13 C 1.50695 * 109.46938 * 240.00712 * 2 1 3 14 14 O 1.21279 * 120.00509 * 119.99971 * 13 2 1 15 15 N 1.34779 * 120.00020 * 299.99387 * 13 2 1 16 16 C 1.46494 * 120.00499 * 180.02562 * 15 13 2 17 17 H 1.09003 * 112.85070 * 334.66829 * 16 15 13 18 18 C 1.53784 * 113.61421 * 105.86563 * 16 15 13 19 19 C 1.54046 * 86.98555 * 89.16488 * 18 16 15 20 20 H 1.09001 * 113.61273 * 270.88381 * 19 18 16 21 21 C 1.53006 * 113.69582 * 139.99179 * 19 18 16 22 22 N 1.46495 * 109.47180 * 87.46687 * 21 19 18 23 23 C 1.34943 * 126.03981 * 124.71836 * 22 21 19 24 24 C 1.35316 * 107.75032 * 179.83809 * 23 22 21 25 25 C 1.39870 * 107.91540 * 0.42385 * 24 23 22 26 26 N 1.30834 * 108.20222 * 359.73653 * 25 24 23 27 27 C 1.53783 * 113.61923 * 203.47526 * 16 15 13 28 28 H 1.08991 * 109.47209 * 59.99632 * 1 2 3 29 29 H 1.09002 * 109.47214 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47036 * 299.99770 * 1 2 3 31 31 H 1.08991 * 109.47209 * 120.00368 * 2 1 3 32 32 H 1.07995 * 120.02932 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.97121 * 180.23352 * 6 5 4 34 34 H 1.08996 * 109.47456 * 240.03020 * 8 7 6 35 35 H 0.96703 * 113.99681 * 180.02562 * 9 8 7 36 36 H 1.48504 * 109.99978 * 59.99676 * 10 8 7 37 37 H 1.48499 * 110.00274 * 181.31977 * 10 8 7 38 38 H 1.08004 * 119.97766 * 179.97438 * 11 7 6 39 39 H 1.07994 * 120.02575 * 179.97438 * 12 11 7 40 40 H 0.97007 * 119.99561 * 0.02562 * 15 13 2 41 41 H 1.08997 * 113.61446 * 203.66669 * 18 16 15 42 42 H 1.09001 * 113.61362 * 334.57130 * 18 16 15 43 43 H 1.09001 * 109.46893 * 207.46905 * 21 19 18 44 44 H 1.09001 * 109.46721 * 327.46408 * 21 19 18 45 45 H 1.08005 * 126.12398 * 359.97438 * 23 22 21 46 46 H 1.08002 * 126.04115 * 180.15663 * 24 23 22 47 47 H 1.08007 * 125.89843 * 179.72105 * 25 24 23 48 48 H 1.08996 * 113.61524 * 25.42995 * 27 16 15 49 49 H 1.08997 * 113.62019 * 156.33671 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1091 1.9653 1.2060 5 6 2.6737 3.2296 1.2930 6 6 2.7722 3.8579 2.5194 7 6 2.3183 3.2234 3.6609 8 6 2.4322 3.9086 4.9983 9 8 1.1299 4.0679 5.5644 10 14 3.2205 5.5817 4.7736 11 6 1.7606 1.9610 3.5777 12 6 1.6549 1.3306 2.3529 13 6 2.0323 -0.7102 -1.2305 14 8 2.7295 -0.1208 -2.0288 15 7 1.7068 -2.0006 -1.4439 16 6 2.1955 -2.6913 -2.6398 17 1 2.4139 -2.0103 -3.4624 18 6 3.3257 -3.6940 -2.3534 19 6 2.2243 -4.7476 -2.1301 20 1 1.8686 -4.7958 -1.1009 21 6 2.5637 -6.1236 -2.7065 22 7 3.3104 -6.8988 -1.7127 23 6 2.9792 -8.1213 -1.2471 24 6 3.9223 -8.4904 -0.3497 25 6 4.8569 -7.4538 -0.2568 26 7 4.4910 -6.4993 -1.0734 27 6 1.3334 -3.8967 -3.0506 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.0324 3.7237 0.4023 33 1 3.2082 4.8437 2.5871 34 1 3.0469 3.3041 5.6651 35 1 1.1270 4.5033 6.4279 36 1 2.3920 6.4157 3.8662 37 1 3.3677 6.2547 6.0891 38 1 1.4071 1.4672 4.4708 39 1 1.2196 0.3444 2.2885 40 1 1.1489 -2.4720 -0.8055 41 1 3.9570 -3.8989 -3.2180 42 1 3.8983 -3.4618 -1.4555 43 1 1.6426 -6.6487 -2.9597 44 1 3.1709 -6.0020 -3.6036 45 1 2.1170 -8.7021 -1.5400 46 1 3.9466 -9.4191 0.2010 47 1 5.7296 -7.4432 0.3793 48 1 0.2986 -3.8281 -2.7151 49 1 1.4210 -4.1570 -4.1054 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688104_10157680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:32:54 Heat of formation + Delta-G solvation = 42.098239 kcal Electronic energy + Delta-G solvation = -30836.880973 eV Core-core repulsion = 26541.226385 eV Total energy + Delta-G solvation = -4295.654587 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.12075 -41.77403 -40.98396 -39.70846 -38.72162 -37.30424 -35.21546 -33.94523 -32.79136 -32.05214 -31.40788 -30.93728 -28.63508 -26.86970 -26.71533 -25.65726 -24.42783 -23.85744 -22.40079 -21.94460 -21.65150 -21.45935 -20.44852 -19.41784 -18.67894 -18.45490 -18.14178 -17.32437 -16.85287 -16.77809 -16.70767 -16.44211 -15.99197 -15.83838 -15.70133 -15.39295 -15.07304 -14.97376 -14.81673 -14.46373 -14.37809 -14.34761 -13.99286 -13.87414 -13.80434 -13.65290 -13.52786 -13.48219 -13.41438 -12.99152 -12.90862 -12.35210 -12.31959 -12.17767 -11.86626 -11.76095 -11.65011 -11.57904 -11.36012 -10.82310 -10.48209 -10.31965 -10.16582 -9.98664 -9.49321 -9.13226 -4.94815 0.29550 0.40344 1.00015 1.30019 1.42441 1.49703 1.57087 1.60798 1.97210 1.98535 2.44806 2.66361 3.16534 3.29375 3.35545 3.37779 3.51196 3.56145 3.61625 3.75708 3.83037 3.86539 3.90476 3.92207 3.93344 4.03355 4.21183 4.22709 4.28525 4.29875 4.35348 4.43681 4.49576 4.58503 4.59813 4.64060 4.67264 4.71043 4.83993 4.89219 4.90674 4.98733 5.03365 5.04551 5.13395 5.22429 5.34408 5.44352 5.54938 5.69966 5.76253 6.08801 6.23683 6.39015 6.44597 6.81844 7.07897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.067 3.933 3 O -0.283 6.283 4 C 0.134 3.866 5 C -0.141 4.141 6 C -0.073 4.073 7 C -0.111 4.111 8 C -0.071 4.071 9 O -0.537 6.537 10 Si 0.679 3.321 11 C -0.050 4.050 12 C -0.212 4.212 13 C 0.522 3.478 14 O -0.508 6.508 15 N -0.709 5.709 16 C 0.120 3.880 17 H 0.107 0.893 18 C -0.133 4.133 19 C -0.122 4.122 20 H 0.094 0.906 21 C 0.142 3.858 22 N -0.372 5.372 23 C 0.049 3.951 24 C -0.274 4.274 25 C 0.041 3.959 26 N -0.289 5.289 27 C -0.136 4.136 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.075 0.925 35 H 0.379 0.621 36 H -0.254 1.254 37 H -0.261 1.261 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.401 0.599 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.172 0.828 46 H 0.146 0.854 47 H 0.182 0.818 48 H 0.079 0.921 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.365 -5.056 1.573 5.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.007 3.993 3 O -0.195 6.195 4 C 0.089 3.911 5 C -0.159 4.159 6 C -0.090 4.090 7 C -0.111 4.111 8 C -0.180 4.180 9 O -0.345 6.345 10 Si 0.580 3.420 11 C -0.068 4.068 12 C -0.230 4.230 13 C 0.307 3.693 14 O -0.381 6.381 15 N -0.363 5.363 16 C 0.014 3.986 17 H 0.125 0.875 18 C -0.172 4.172 19 C -0.141 4.141 20 H 0.112 0.888 21 C 0.020 3.980 22 N -0.155 5.155 23 C -0.097 4.097 24 C -0.304 4.304 25 C -0.145 4.145 26 N -0.110 5.110 27 C -0.175 4.175 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.093 0.907 35 H 0.227 0.773 36 H -0.179 1.179 37 H -0.187 1.187 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.236 0.764 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.116 0.884 44 H 0.106 0.894 45 H 0.189 0.811 46 H 0.164 0.836 47 H 0.199 0.801 48 H 0.098 0.902 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.868 -2.718 -0.258 3.308 hybrid contribution -1.456 -1.522 1.838 2.795 sum -3.324 -4.240 1.580 5.614 Atomic orbital electron populations 1.22369 0.92366 1.03818 1.04995 1.22170 0.95853 0.83366 0.97927 1.86217 1.80937 1.25305 1.27074 1.19062 0.95261 0.92839 0.83940 1.20379 1.03280 0.93615 0.98638 1.20764 0.98124 0.98956 0.91201 1.19156 1.03244 0.95411 0.93323 1.24718 0.88955 1.09756 0.94599 1.86586 1.27144 1.81927 1.38799 0.95086 0.88962 0.75724 0.82196 1.20760 0.95212 0.93766 0.97045 1.21295 1.07303 1.01805 0.92629 1.20070 0.80474 0.81770 0.87003 1.90778 1.35974 1.65628 1.45751 1.45509 1.54028 1.11337 1.25414 1.21858 0.95241 0.93269 0.88183 0.87481 1.23450 0.96178 0.94226 1.03342 1.22958 0.98269 0.92750 1.00118 0.88754 1.21787 0.95258 0.91571 0.89342 1.48742 1.19677 1.13737 1.33296 1.22605 1.00992 0.88199 0.97866 1.21559 0.98574 1.03111 1.07149 1.23953 1.00255 0.91922 0.98361 1.77401 0.98508 1.23372 1.11769 1.23348 0.98840 0.94468 1.00851 0.90381 0.90313 0.90215 0.88108 0.84344 0.84833 0.90683 0.77316 1.17883 1.18663 0.85419 0.85129 0.76431 0.88786 0.90500 0.88413 0.89403 0.81078 0.83582 0.80125 0.90237 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.34 9.07 37.16 0.34 0.67 16 2 C 0.07 0.02 2.65 -27.88 -0.07 -0.05 16 3 O -0.28 -1.00 9.33 -39.33 -0.37 -1.36 16 4 C 0.13 0.35 6.60 -39.22 -0.26 0.10 16 5 C -0.14 -0.32 9.99 -39.43 -0.39 -0.71 16 6 C -0.07 -0.10 8.66 -39.60 -0.34 -0.44 16 7 C -0.11 -0.19 5.42 -104.60 -0.57 -0.76 16 8 C -0.07 -0.02 2.81 36.01 0.10 0.08 16 9 O -0.54 -0.74 12.74 -35.23 -0.45 -1.19 16 10 Si 0.68 -0.31 29.78 -169.99 -5.06 -5.37 16 11 C -0.05 -0.07 9.60 -39.60 -0.38 -0.45 16 12 C -0.21 -0.23 8.24 -39.43 -0.32 -0.56 16 13 C 0.52 1.06 7.23 -10.99 -0.08 0.98 16 14 O -0.51 -3.46 16.12 -14.35 -0.23 -3.69 16 15 N -0.71 0.90 5.16 -53.02 -0.27 0.63 16 16 C 0.12 -0.13 4.29 -67.12 -0.29 -0.42 16 17 H 0.11 0.08 7.50 -51.93 -0.39 -0.31 16 18 C -0.13 0.09 7.45 -25.78 -0.19 -0.10 16 19 C -0.12 0.32 3.71 -89.66 -0.33 -0.01 16 20 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 21 C 0.14 -0.35 6.35 -4.04 -0.03 -0.38 16 22 N -0.37 -0.20 3.68 -61.37 -0.23 -0.43 16 23 C 0.05 -0.02 11.45 -17.23 -0.20 -0.21 16 24 C -0.27 -0.14 10.80 -40.01 -0.43 -0.58 16 25 C 0.04 0.07 12.03 -17.37 -0.21 -0.14 16 26 N -0.29 -0.84 12.42 30.63 0.38 -0.46 16 27 C -0.14 0.52 7.38 -25.92 -0.19 0.33 16 28 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 29 H 0.08 -0.35 7.56 -51.93 -0.39 -0.74 16 30 H 0.08 -0.15 6.90 -51.93 -0.36 -0.50 16 31 H 0.10 -0.17 6.32 -51.93 -0.33 -0.50 16 32 H 0.14 0.18 8.06 -52.49 -0.42 -0.24 16 33 H 0.13 -0.08 4.87 -52.49 -0.26 -0.34 16 34 H 0.08 -0.11 7.96 -51.93 -0.41 -0.52 16 35 H 0.38 -0.97 8.74 45.56 0.40 -0.58 16 36 H -0.25 -0.70 7.11 56.52 0.40 -0.30 16 37 H -0.26 -0.39 7.11 56.52 0.40 0.02 16 38 H 0.13 0.04 8.06 -52.48 -0.42 -0.38 16 39 H 0.13 -0.17 5.43 -52.49 -0.28 -0.45 16 40 H 0.40 -1.62 8.12 -40.82 -0.33 -1.95 16 41 H 0.09 -0.06 7.91 -51.93 -0.41 -0.47 16 42 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 43 H 0.10 -0.47 8.07 -51.93 -0.42 -0.89 16 44 H 0.09 -0.22 7.85 -51.93 -0.41 -0.63 16 45 H 0.17 -0.62 8.06 -52.48 -0.42 -1.04 16 46 H 0.15 -0.17 8.06 -52.49 -0.42 -0.60 16 47 H 0.18 -0.15 8.06 -52.48 -0.42 -0.57 16 48 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 49 H 0.10 -0.48 8.10 -51.93 -0.42 -0.90 16 LS Contribution 405.38 15.07 6.11 6.11 Total: 0.00 -11.49 405.38 -10.99 -22.48 By element: Atomic # 1 Polarization: -7.05 SS G_CDS: -7.02 Total: -14.07 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -3.85 Total: -2.66 kcal Atomic # 7 Polarization: -0.13 SS G_CDS: -0.12 Total: -0.25 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -1.05 Total: -6.24 kcal Atomic # 14 Polarization: -0.31 SS G_CDS: -5.06 Total: -5.37 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -11.49 -10.99 -22.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_10157680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.580 kcal (2) G-P(sol) polarization free energy of solvation -11.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds