Wall clock time and date at job start Sun Mar 7 2021 04:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42905 * 109.46909 * 2 1 4 4 C 1.35899 * 116.99622 * 84.83139 * 3 2 1 5 5 C 1.38734 * 120.05398 * 174.34665 * 4 3 2 6 6 C 1.38151 * 119.94349 * 179.74690 * 5 4 3 7 7 C 1.38264 * 120.05281 * 0.50478 * 6 5 4 8 8 C 1.50699 * 119.94461 * 179.74572 * 7 6 5 9 9 O 1.42900 * 109.47322 * 120.02637 * 8 7 6 10 10 Si 1.86305 * 109.46999 * 0.02674 * 8 7 6 11 11 C 1.38263 * 120.11467 * 359.77714 * 7 6 5 12 12 C 1.38149 * 120.05483 * 359.96874 * 11 7 6 13 13 C 1.50695 * 109.46938 * 240.00712 * 2 1 3 14 14 O 1.21279 * 120.00509 * 119.99971 * 13 2 1 15 15 N 1.34779 * 120.00020 * 299.99387 * 13 2 1 16 16 C 1.46494 * 120.00499 * 180.02562 * 15 13 2 17 17 H 1.09003 * 112.85070 * 334.66829 * 16 15 13 18 18 C 1.53784 * 113.61421 * 105.86563 * 16 15 13 19 19 C 1.54046 * 86.98555 * 89.16488 * 18 16 15 20 20 H 1.09001 * 113.61273 * 270.88381 * 19 18 16 21 21 C 1.53006 * 113.69582 * 139.99179 * 19 18 16 22 22 N 1.46495 * 109.47180 * 87.46687 * 21 19 18 23 23 C 1.34943 * 126.03981 * 124.71836 * 22 21 19 24 24 C 1.35316 * 107.75032 * 179.83809 * 23 22 21 25 25 C 1.39870 * 107.91540 * 0.42385 * 24 23 22 26 26 N 1.30834 * 108.20222 * 359.73653 * 25 24 23 27 27 C 1.53783 * 113.61923 * 203.47526 * 16 15 13 28 28 H 1.08991 * 109.47209 * 59.99632 * 1 2 3 29 29 H 1.09002 * 109.47214 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47036 * 299.99770 * 1 2 3 31 31 H 1.08991 * 109.47209 * 120.00368 * 2 1 3 32 32 H 1.07995 * 120.02932 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.97121 * 180.23352 * 6 5 4 34 34 H 1.08996 * 109.47456 * 240.03020 * 8 7 6 35 35 H 0.96703 * 113.99681 * 180.02562 * 9 8 7 36 36 H 1.48504 * 109.99978 * 59.99676 * 10 8 7 37 37 H 1.48499 * 110.00274 * 181.31977 * 10 8 7 38 38 H 1.08004 * 119.97766 * 179.97438 * 11 7 6 39 39 H 1.07994 * 120.02575 * 179.97438 * 12 11 7 40 40 H 0.97007 * 119.99561 * 0.02562 * 15 13 2 41 41 H 1.08997 * 113.61446 * 203.66669 * 18 16 15 42 42 H 1.09001 * 113.61362 * 334.57130 * 18 16 15 43 43 H 1.09001 * 109.46893 * 207.46905 * 21 19 18 44 44 H 1.09001 * 109.46721 * 327.46408 * 21 19 18 45 45 H 1.08005 * 126.12398 * 359.97438 * 23 22 21 46 46 H 1.08002 * 126.04115 * 180.15663 * 24 23 22 47 47 H 1.08007 * 125.89843 * 179.72105 * 25 24 23 48 48 H 1.08996 * 113.61524 * 25.42995 * 27 16 15 49 49 H 1.08997 * 113.62019 * 156.33671 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1091 1.9653 1.2060 5 6 2.6737 3.2296 1.2930 6 6 2.7722 3.8579 2.5194 7 6 2.3183 3.2234 3.6609 8 6 2.4322 3.9086 4.9983 9 8 1.1299 4.0679 5.5644 10 14 3.2205 5.5817 4.7736 11 6 1.7606 1.9610 3.5777 12 6 1.6549 1.3306 2.3529 13 6 2.0323 -0.7102 -1.2305 14 8 2.7295 -0.1208 -2.0288 15 7 1.7068 -2.0006 -1.4439 16 6 2.1955 -2.6913 -2.6398 17 1 2.4139 -2.0103 -3.4624 18 6 3.3257 -3.6940 -2.3534 19 6 2.2243 -4.7476 -2.1301 20 1 1.8686 -4.7958 -1.1009 21 6 2.5637 -6.1236 -2.7065 22 7 3.3104 -6.8988 -1.7127 23 6 2.9792 -8.1213 -1.2471 24 6 3.9223 -8.4904 -0.3497 25 6 4.8569 -7.4538 -0.2568 26 7 4.4910 -6.4993 -1.0734 27 6 1.3334 -3.8967 -3.0506 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.0324 3.7237 0.4023 33 1 3.2082 4.8437 2.5871 34 1 3.0469 3.3041 5.6651 35 1 1.1270 4.5033 6.4279 36 1 2.3920 6.4157 3.8662 37 1 3.3677 6.2547 6.0891 38 1 1.4071 1.4672 4.4708 39 1 1.2196 0.3444 2.2885 40 1 1.1489 -2.4720 -0.8055 41 1 3.9570 -3.8989 -3.2180 42 1 3.8983 -3.4618 -1.4555 43 1 1.6426 -6.6487 -2.9597 44 1 3.1709 -6.0020 -3.6036 45 1 2.1170 -8.7021 -1.5400 46 1 3.9466 -9.4191 0.2010 47 1 5.7296 -7.4432 0.3793 48 1 0.2986 -3.8281 -2.7151 49 1 1.4210 -4.1570 -4.1054 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_10157680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:32:53 Heat of formation + Delta-G solvation = 41.421885 kcal Electronic energy + Delta-G solvation = -30836.910302 eV Core-core repulsion = 26541.226385 eV Total energy + Delta-G solvation = -4295.683916 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.09352 -41.84057 -41.01145 -39.73101 -38.82550 -37.36249 -35.26883 -33.92174 -32.78414 -32.12106 -31.45158 -30.91008 -28.54777 -26.76940 -26.68804 -25.64855 -24.42123 -23.86195 -22.46928 -21.89316 -21.64993 -21.47991 -20.38239 -19.48277 -18.71505 -18.47118 -18.07483 -17.39457 -16.91064 -16.83503 -16.68436 -16.39553 -16.00038 -15.83467 -15.76167 -15.43730 -15.12024 -14.93506 -14.76701 -14.44720 -14.39051 -14.37012 -14.02206 -13.91818 -13.70638 -13.59305 -13.49100 -13.39888 -13.36186 -12.95532 -12.81395 -12.38862 -12.26758 -12.19843 -11.89301 -11.74768 -11.68991 -11.56543 -11.23401 -10.99850 -10.49487 -10.32184 -10.19562 -10.06938 -9.46265 -9.23674 -4.93335 0.21054 0.30086 1.03772 1.30121 1.32951 1.43916 1.58290 1.70398 1.93763 1.97838 2.43229 2.58753 3.33402 3.38677 3.39140 3.45927 3.60472 3.68023 3.71901 3.78571 3.82711 3.86537 3.89899 4.02965 4.11087 4.22861 4.23979 4.30215 4.37238 4.45263 4.47806 4.54702 4.59484 4.63961 4.66860 4.74598 4.80156 4.82299 4.94004 4.96050 5.01187 5.03963 5.04939 5.12056 5.15140 5.18474 5.25489 5.46695 5.49944 5.64294 5.77802 6.21014 6.22285 6.38363 6.59648 6.82104 7.03029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.064 3.936 3 O -0.311 6.311 4 C 0.118 3.882 5 C -0.159 4.159 6 C -0.079 4.079 7 C -0.123 4.123 8 C -0.076 4.076 9 O -0.558 6.558 10 Si 0.752 3.248 11 C -0.058 4.058 12 C -0.208 4.208 13 C 0.519 3.481 14 O -0.567 6.567 15 N -0.691 5.691 16 C 0.110 3.890 17 H 0.084 0.916 18 C -0.138 4.138 19 C -0.108 4.108 20 H 0.092 0.908 21 C 0.134 3.866 22 N -0.375 5.375 23 C 0.053 3.947 24 C -0.293 4.293 25 C 0.025 3.975 26 N -0.331 5.331 27 C -0.114 4.114 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.147 0.853 34 H 0.097 0.903 35 H 0.395 0.605 36 H -0.301 1.301 37 H -0.284 1.284 38 H 0.141 0.859 39 H 0.154 0.846 40 H 0.418 0.582 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.132 0.868 44 H 0.087 0.913 45 H 0.207 0.793 46 H 0.159 0.841 47 H 0.192 0.808 48 H 0.099 0.901 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.159 -7.065 2.315 8.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 O -0.224 6.224 4 C 0.073 3.927 5 C -0.177 4.177 6 C -0.096 4.096 7 C -0.124 4.124 8 C -0.185 4.185 9 O -0.368 6.368 10 Si 0.658 3.342 11 C -0.076 4.076 12 C -0.227 4.227 13 C 0.305 3.695 14 O -0.445 6.445 15 N -0.344 5.344 16 C 0.004 3.996 17 H 0.102 0.898 18 C -0.176 4.176 19 C -0.127 4.127 20 H 0.111 0.889 21 C 0.014 3.986 22 N -0.158 5.158 23 C -0.093 4.093 24 C -0.323 4.323 25 C -0.161 4.161 26 N -0.153 5.153 27 C -0.152 4.152 28 H 0.081 0.919 29 H 0.129 0.871 30 H 0.102 0.898 31 H 0.140 0.860 32 H 0.155 0.845 33 H 0.164 0.836 34 H 0.115 0.885 35 H 0.245 0.755 36 H -0.229 1.229 37 H -0.211 1.211 38 H 0.159 0.841 39 H 0.172 0.828 40 H 0.256 0.744 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.150 0.850 44 H 0.105 0.895 45 H 0.223 0.777 46 H 0.176 0.824 47 H 0.208 0.792 48 H 0.117 0.883 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.676 -4.775 0.520 6.049 hybrid contribution -0.903 -0.896 1.596 2.041 sum -4.579 -5.671 2.116 7.590 Atomic orbital electron populations 1.22374 0.90390 1.05734 1.04415 1.22399 0.97240 0.82231 0.97630 1.86181 1.81516 1.26861 1.27880 1.19249 0.95999 0.93171 0.84251 1.20565 1.03910 0.94122 0.99121 1.20934 0.98201 0.99495 0.90966 1.19435 1.03153 0.95820 0.93973 1.24843 0.88902 1.10315 0.94424 1.86538 1.27794 1.82335 1.40094 0.94235 0.87395 0.73646 0.78924 1.21000 0.95126 0.93829 0.97611 1.21516 1.06621 1.02619 0.91905 1.20512 0.79613 0.82451 0.86942 1.90748 1.38819 1.67098 1.47829 1.45389 1.53124 1.10360 1.25543 1.21934 0.96451 0.93517 0.87656 0.89811 1.23424 0.96555 0.95820 1.01848 1.22826 0.97146 0.92411 1.00361 0.88939 1.22071 0.96309 0.91643 0.88612 1.48991 1.19134 1.14297 1.33356 1.23189 1.01467 0.87846 0.96840 1.21851 0.98828 1.03522 1.08063 1.24302 1.01033 0.92261 0.98469 1.77339 1.00246 1.24641 1.13079 1.23276 0.99034 0.91406 1.01466 0.91859 0.87102 0.89847 0.85957 0.84485 0.83583 0.88485 0.75502 1.22912 1.21118 0.84129 0.82810 0.74448 0.89356 0.93288 0.85049 0.89513 0.77664 0.82364 0.79154 0.88294 0.86492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.77 9.07 71.98 0.65 1.42 16 2 C 0.06 0.07 2.65 29.85 0.08 0.15 16 3 O -0.31 -2.73 9.33 -73.38 -0.68 -3.41 16 4 C 0.12 0.76 6.60 22.51 0.15 0.91 16 5 C -0.16 -1.00 9.99 22.37 0.22 -0.77 16 6 C -0.08 -0.29 8.66 22.26 0.19 -0.10 16 7 C -0.12 -0.42 5.42 -19.85 -0.11 -0.53 16 8 C -0.08 0.00 2.81 71.24 0.20 0.20 16 9 O -0.56 -1.23 12.74 -148.98 -1.90 -3.13 16 10 Si 0.75 -0.50 29.78 68.60 2.04 1.54 16 11 C -0.06 -0.14 9.60 22.25 0.21 0.07 16 12 C -0.21 -0.42 8.24 22.37 0.18 -0.24 16 13 C 0.52 2.82 7.23 87.66 0.63 3.45 16 14 O -0.57 -9.41 16.12 16.01 0.26 -9.15 16 15 N -0.69 1.60 5.16 -440.04 -2.27 -0.66 16 16 C 0.11 -0.17 4.29 45.52 0.20 0.02 16 17 H 0.08 0.30 7.50 -2.39 -0.02 0.28 16 18 C -0.14 0.01 7.45 31.21 0.23 0.24 16 19 C -0.11 0.67 3.71 -10.17 -0.04 0.63 16 20 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 21 C 0.13 -0.85 6.35 86.38 0.55 -0.31 16 22 N -0.38 -0.15 3.68 -348.06 -1.28 -1.43 16 23 C 0.05 -0.11 11.45 83.54 0.96 0.84 16 24 C -0.29 -0.20 10.80 21.99 0.24 0.04 16 25 C 0.02 0.10 12.03 85.24 1.02 1.12 16 26 N -0.33 -2.20 12.42 -57.02 -0.71 -2.91 16 27 C -0.11 1.05 7.38 31.12 0.23 1.28 16 28 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.11 -1.25 7.56 -2.39 -0.02 -1.27 16 30 H 0.08 -0.39 6.90 -2.38 -0.02 -0.41 16 31 H 0.12 -0.48 6.32 -2.39 -0.02 -0.50 16 32 H 0.14 0.72 8.06 -2.91 -0.02 0.70 16 33 H 0.15 -0.03 4.87 -2.91 -0.01 -0.04 16 34 H 0.10 -0.42 7.96 -2.39 -0.02 -0.44 16 35 H 0.39 -2.28 8.74 -74.06 -0.65 -2.92 16 36 H -0.30 -2.15 7.11 99.48 0.71 -1.44 16 37 H -0.28 -0.87 7.11 99.48 0.71 -0.16 16 38 H 0.14 -0.08 8.06 -2.91 -0.02 -0.10 16 39 H 0.15 -0.59 5.43 -2.91 -0.02 -0.61 16 40 H 0.42 -3.89 8.12 -92.70 -0.75 -4.64 16 41 H 0.09 0.07 7.91 -2.39 -0.02 0.05 16 42 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.13 -1.71 8.07 -2.39 -0.02 -1.73 16 44 H 0.09 -0.51 7.85 -2.39 -0.02 -0.53 16 45 H 0.21 -2.10 8.06 -2.91 -0.02 -2.13 16 46 H 0.16 -0.46 8.06 -2.91 -0.02 -0.48 16 47 H 0.19 -0.06 8.06 -2.91 -0.02 -0.08 16 48 H 0.10 -1.21 8.14 -2.39 -0.02 -1.23 16 49 H 0.12 -1.36 8.10 -2.39 -0.02 -1.37 16 Total: 0.00 -31.00 405.38 0.89 -30.11 By element: Atomic # 1 Polarization: -19.02 SS G_CDS: -0.37 Total: -19.39 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 5.81 Total: 8.44 kcal Atomic # 7 Polarization: -0.75 SS G_CDS: -4.26 Total: -5.00 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -2.33 Total: -15.69 kcal Atomic # 14 Polarization: -0.50 SS G_CDS: 2.04 Total: 1.54 kcal Total: -31.00 0.89 -30.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_10157680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.527 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds