Wall clock time and date at job start Sun Mar 7 2021 04:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35535 * 125.67532 * 2 1 4 4 C 1.35457 * 108.86749 * 179.86546 * 3 2 1 5 5 C 1.50696 * 126.06250 * 180.11951 * 4 3 2 6 6 O 1.42908 * 109.47074 * 245.32119 * 5 4 3 7 7 Si 1.86300 * 109.47605 * 5.31859 * 5 4 3 8 8 C 1.39832 * 107.86842 * 0.39109 * 4 3 2 9 9 C 1.37653 * 125.68042 * 180.29861 * 2 1 3 10 10 C 1.46676 * 126.23065 * 359.95236 * 9 2 1 11 11 O 1.21696 * 120.00433 * 5.04101 * 10 9 2 12 12 N 1.34778 * 119.99964 * 185.04505 * 10 9 2 13 13 C 1.46494 * 120.00272 * 185.08031 * 12 10 9 14 14 H 1.09002 * 112.84820 * 336.19273 * 13 12 10 15 15 C 1.53779 * 113.61794 * 107.50061 * 13 12 10 16 16 C 1.53781 * 87.08039 * 89.11932 * 15 13 12 17 17 H 1.09005 * 113.61098 * 270.88407 * 16 15 13 18 18 C 1.52998 * 113.61443 * 139.98614 * 16 15 13 19 19 N 1.46499 * 109.47189 * 87.49974 * 18 16 15 20 20 C 1.34944 * 126.03539 * 124.71535 * 19 18 16 21 21 C 1.35324 * 107.74788 * 179.83787 * 20 19 18 22 22 C 1.39870 * 107.91611 * 0.42665 * 21 20 19 23 23 N 1.30842 * 108.20055 * 359.73232 * 22 21 20 24 24 C 1.53776 * 87.08382 * 25.43378 * 16 15 13 25 25 H 1.08998 * 109.47657 * 264.14353 * 1 2 3 26 26 H 1.09011 * 109.47131 * 144.14652 * 1 2 3 27 27 H 1.09004 * 109.47482 * 24.14629 * 1 2 3 28 28 H 1.07996 * 125.56630 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.47341 * 125.32383 * 5 4 3 30 30 H 0.96698 * 113.99602 * 59.99866 * 6 5 4 31 31 H 1.48499 * 110.00387 * 180.02562 * 7 5 4 32 32 H 1.48505 * 109.99908 * 301.32249 * 7 5 4 33 33 H 1.07990 * 126.45834 * 179.76260 * 8 4 3 34 34 H 0.97004 * 119.99693 * 5.07576 * 12 10 9 35 35 H 1.09005 * 113.61886 * 203.66744 * 15 13 12 36 36 H 1.09000 * 113.61363 * 334.56768 * 15 13 12 37 37 H 1.08999 * 109.46885 * 207.49896 * 18 16 15 38 38 H 1.08996 * 109.46948 * 327.49921 * 18 16 15 39 39 H 1.07997 * 126.13145 * 0.02562 * 20 19 18 40 40 H 1.07996 * 126.04571 * 180.16164 * 21 20 19 41 41 H 1.07999 * 125.90157 * 179.71965 * 22 21 20 42 42 H 1.08991 * 113.61760 * 220.02160 * 24 16 15 43 43 H 1.08996 * 113.69056 * 89.12680 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7093 0.0030 5 6 4.7535 1.6190 0.0066 6 8 5.4760 1.4587 -1.2160 7 14 4.1927 3.3881 0.1691 8 6 3.5780 -0.6887 -0.0041 9 6 2.2678 -1.1181 -0.0058 10 6 1.8124 -2.5124 -0.0121 11 8 0.6255 -2.7645 -0.1051 12 7 2.7085 -3.5144 0.0852 13 6 2.2667 -4.9062 -0.0328 14 1 1.2134 -5.0383 0.2145 15 6 2.6793 -5.5735 -1.3553 16 6 3.9797 -5.9904 -0.6482 17 1 4.7768 -5.2513 -0.7288 18 6 4.4422 -7.4057 -1.0003 19 7 5.2767 -7.3616 -2.2036 20 6 6.5324 -7.8426 -2.3168 21 6 6.9503 -7.6107 -3.5829 22 6 5.9180 -6.9572 -4.2638 23 7 4.9143 -6.8074 -3.4380 24 6 3.1954 -5.9092 0.6720 25 1 -0.3634 -0.1049 1.0222 26 1 -0.3634 -0.8330 -0.6020 27 1 -0.3634 0.9378 -0.4204 28 1 1.9081 2.1236 0.0004 29 1 5.3998 1.3640 0.8465 30 1 4.9613 1.6688 -2.0073 31 1 5.3683 4.2953 0.1733 32 1 3.2854 3.7384 -0.9531 33 1 4.4583 -1.3143 -0.0075 34 1 3.6460 -3.3140 0.2333 35 1 2.0459 -6.4150 -1.6361 36 1 2.8330 -4.8674 -2.1714 37 1 5.0202 -7.8156 -0.1721 38 1 3.5728 -8.0369 -1.1840 39 1 7.1009 -8.3285 -1.5377 40 1 7.9125 -7.8787 -3.9936 41 1 5.9449 -6.6321 -5.2934 42 1 3.7656 -5.4740 1.4926 43 1 2.7026 -6.8418 0.9468 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_10803934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:33:02 Heat of formation + Delta-G solvation = 97.023342 kcal Electronic energy + Delta-G solvation = -26016.991722 eV Core-core repulsion = 22260.738907 eV Total energy + Delta-G solvation = -3756.252816 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.61594 -42.04150 -40.98978 -39.26574 -37.83955 -35.26070 -34.03383 -33.39751 -31.08316 -30.77201 -28.61238 -28.23286 -26.72727 -25.79546 -24.75636 -23.52175 -21.91143 -21.62394 -21.37471 -20.64764 -20.19377 -18.92688 -18.18714 -17.84534 -17.10295 -16.87843 -16.70712 -16.32654 -16.05411 -15.80214 -15.58477 -15.39901 -15.12865 -14.89476 -14.82037 -14.45324 -14.40262 -14.04097 -13.70677 -13.57520 -13.51100 -13.40677 -13.28667 -13.17890 -12.82168 -12.45011 -12.20517 -11.80724 -11.69460 -11.58591 -11.25378 -11.24571 -10.47493 -10.33616 -10.21199 -9.75209 -9.47867 -9.31745 -4.86558 0.34254 1.02157 1.37340 1.51765 1.53356 1.66450 1.68993 1.96118 2.03126 2.19863 2.26751 3.33422 3.44965 3.52300 3.62234 3.67022 3.78547 3.80436 3.99112 4.01562 4.09528 4.20039 4.22374 4.32795 4.35780 4.36025 4.46348 4.63484 4.69124 4.70746 4.73110 4.75340 4.78645 4.82235 4.92379 4.99861 5.03842 5.11779 5.15196 5.16654 5.48919 5.63973 5.76079 5.83367 6.12532 6.20677 6.38146 6.58101 6.80303 7.04362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.412 5.412 3 C 0.036 3.964 4 C -0.215 4.215 5 C -0.048 4.048 6 O -0.553 6.553 7 Si 0.771 3.229 8 C -0.112 4.112 9 C -0.079 4.079 10 C 0.589 3.411 11 O -0.582 6.582 12 N -0.691 5.691 13 C 0.113 3.887 14 H 0.091 0.909 15 C -0.136 4.136 16 C -0.110 4.110 17 H 0.086 0.914 18 C 0.135 3.865 19 N -0.375 5.375 20 C 0.053 3.947 21 C -0.294 4.294 22 C 0.024 3.976 23 N -0.331 5.331 24 C -0.115 4.115 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.200 0.800 29 H 0.120 0.880 30 H 0.383 0.617 31 H -0.307 1.307 32 H -0.279 1.279 33 H 0.153 0.847 34 H 0.413 0.587 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.131 0.869 38 H 0.090 0.910 39 H 0.207 0.793 40 H 0.159 0.841 41 H 0.192 0.808 42 H 0.093 0.907 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.334 -0.829 5.400 5.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.083 5.083 3 C -0.101 4.101 4 C -0.221 4.221 5 C -0.157 4.157 6 O -0.361 6.361 7 Si 0.676 3.324 8 C -0.138 4.138 9 C -0.192 4.192 10 C 0.378 3.622 11 O -0.464 6.464 12 N -0.341 5.341 13 C 0.008 3.992 14 H 0.109 0.891 15 C -0.175 4.175 16 C -0.129 4.129 17 H 0.105 0.895 18 C 0.015 3.985 19 N -0.158 5.158 20 C -0.093 4.093 21 C -0.323 4.323 22 C -0.161 4.161 23 N -0.153 5.153 24 C -0.154 4.154 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.133 0.867 28 H 0.217 0.783 29 H 0.137 0.863 30 H 0.232 0.768 31 H -0.235 1.235 32 H -0.205 1.205 33 H 0.171 0.829 34 H 0.250 0.750 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.149 0.851 38 H 0.108 0.892 39 H 0.224 0.776 40 H 0.177 0.823 41 H 0.208 0.792 42 H 0.112 0.888 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.752 -0.036 5.657 5.707 hybrid contribution 1.366 -0.573 -1.702 2.256 sum 0.614 -0.609 3.955 4.049 Atomic orbital electron populations 1.22407 0.74781 1.05715 1.04767 1.44031 1.07669 1.04763 1.51883 1.22359 0.89839 0.92504 1.05403 1.19827 0.94194 0.94559 1.13558 1.24555 0.93462 1.08741 0.88958 1.86559 1.42746 1.90302 1.16498 0.94306 0.79033 0.71481 0.87582 1.21391 0.94176 0.95306 1.02957 1.20035 0.90970 0.87525 1.20657 1.17199 0.85289 0.84314 0.75394 1.90778 1.17570 1.85391 1.52658 1.45223 1.11311 1.04936 1.72659 1.21932 0.99907 0.79902 0.97506 0.89089 1.23384 0.97335 1.00410 0.96345 1.22761 0.96739 0.96233 0.97172 0.89548 1.22072 0.95630 0.97789 0.83048 1.48997 1.12215 1.44712 1.09875 1.23197 0.86775 0.99444 0.99931 1.21856 1.03086 1.12352 0.94998 1.24300 0.91893 0.99240 1.00667 1.77331 1.24813 1.21483 0.91712 1.23288 0.96467 0.99757 0.95840 0.89609 0.90158 0.86747 0.78294 0.86256 0.76809 1.23548 1.20520 0.82933 0.75024 0.88923 0.93556 0.85097 0.89209 0.77623 0.82319 0.79163 0.88844 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.04 10.49 127.77 1.34 1.30 16 2 N -0.41 -1.10 3.16 -534.31 -1.69 -2.79 16 3 C 0.04 -0.03 9.92 83.48 0.83 0.79 16 4 C -0.22 -0.16 5.43 -20.12 -0.11 -0.27 16 5 C -0.05 0.02 3.02 71.23 0.22 0.24 16 6 O -0.55 -1.94 12.88 -148.98 -1.92 -3.86 16 7 Si 0.77 -2.26 30.60 68.60 2.10 -0.16 16 8 C -0.11 -0.29 10.28 22.57 0.23 -0.06 16 9 C -0.08 -0.42 6.89 40.35 0.28 -0.14 16 10 C 0.59 4.43 7.77 86.45 0.67 5.11 16 11 O -0.58 -8.01 14.35 -4.34 -0.06 -8.07 16 12 N -0.69 -1.04 5.24 -444.00 -2.33 -3.37 16 13 C 0.11 0.01 4.36 45.52 0.20 0.21 16 14 H 0.09 0.35 7.41 -2.39 -0.02 0.33 16 15 C -0.14 -0.18 7.43 31.12 0.23 0.05 16 16 C -0.11 0.42 3.70 -10.27 -0.04 0.39 16 17 H 0.09 -0.14 8.14 -2.38 -0.02 -0.16 16 18 C 0.13 -0.65 6.35 86.38 0.55 -0.10 16 19 N -0.38 -0.79 3.68 -348.07 -1.28 -2.07 16 20 C 0.05 -0.03 11.45 83.54 0.96 0.93 16 21 C -0.29 -0.67 10.80 21.99 0.24 -0.43 16 22 C 0.02 0.14 12.03 85.24 1.03 1.16 16 23 N -0.33 -2.76 12.42 -57.02 -0.71 -3.46 16 24 C -0.12 0.82 7.39 31.12 0.23 1.05 16 25 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 26 H 0.08 0.35 6.54 -2.38 -0.02 0.34 16 27 H 0.11 -0.77 8.12 -2.39 -0.02 -0.79 16 28 H 0.20 -1.47 6.21 -2.91 -0.02 -1.48 16 29 H 0.12 -0.22 7.96 -2.39 -0.02 -0.24 16 30 H 0.38 -0.59 8.70 -74.06 -0.64 -1.23 16 31 H -0.31 -1.68 7.11 99.48 0.71 -0.97 16 32 H -0.28 -0.04 7.11 99.48 0.71 0.67 16 33 H 0.15 -0.06 7.49 -2.92 -0.02 -0.08 16 34 H 0.41 -1.13 7.64 -92.71 -0.71 -1.84 16 35 H 0.09 0.11 7.90 -2.38 -0.02 0.09 16 36 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.13 -1.49 8.07 -2.39 -0.02 -1.51 16 38 H 0.09 -0.45 7.84 -2.39 -0.02 -0.47 16 39 H 0.21 -1.79 8.06 -2.91 -0.02 -1.81 16 40 H 0.16 -0.23 8.06 -2.91 -0.02 -0.25 16 41 H 0.19 0.24 8.06 -2.91 -0.02 0.22 16 42 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 43 H 0.12 -1.26 8.10 -2.39 -0.02 -1.28 16 Total: 0.00 -25.41 362.58 0.69 -24.72 By element: Atomic # 1 Polarization: -10.90 SS G_CDS: -0.27 Total: -11.18 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 6.84 Total: 10.23 kcal Atomic # 7 Polarization: -5.69 SS G_CDS: -6.00 Total: -11.69 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -1.98 Total: -11.93 kcal Atomic # 14 Polarization: -2.26 SS G_CDS: 2.10 Total: -0.16 kcal Total: -25.41 0.69 -24.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_10803934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.747 kcal (2) G-P(sol) polarization free energy of solvation -25.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds