Wall clock time and date at job start Sun Mar 7 2021 04:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37650 * 125.67929 * 2 1 4 4 C 1.46678 * 126.22898 * 359.97438 * 3 2 1 5 5 O 1.21687 * 120.00519 * 5.26611 * 4 3 2 6 6 N 1.34780 * 119.99662 * 185.26479 * 4 3 2 7 7 C 1.46498 * 120.00189 * 174.75119 * 6 4 3 8 8 H 1.09005 * 112.90732 * 336.24686 * 7 6 4 9 9 C 1.53774 * 113.61810 * 107.49790 * 7 6 4 10 10 C 1.53784 * 87.08006 * 89.11950 * 9 7 6 11 11 H 1.09003 * 113.68925 * 270.87492 * 10 9 7 12 12 C 1.53002 * 113.61525 * 139.98203 * 10 9 7 13 13 N 1.46502 * 109.46839 * 87.50178 * 12 10 9 14 14 C 1.34954 * 126.03417 * 125.00478 * 13 12 10 15 15 C 1.35307 * 107.74402 * 180.02562 * 14 13 12 16 16 C 1.39872 * 107.92296 * 359.97438 * 15 14 13 17 17 N 1.30833 * 108.19874 * 0.02562 * 16 15 14 18 18 C 1.53776 * 87.07990 * 25.43354 * 10 9 7 19 19 C 1.37868 * 107.53509 * 180.24221 * 3 2 1 20 20 C 1.39843 * 107.08205 * 359.58508 * 19 3 2 21 21 C 1.35452 * 107.86343 * 0.42047 * 20 19 3 22 22 C 1.50697 * 125.55997 * 179.76365 * 21 20 19 23 23 O 1.42900 * 109.47020 * 209.96872 * 22 21 20 24 24 Si 1.86303 * 109.47226 * 329.97100 * 22 21 20 25 25 H 1.08997 * 109.47488 * 94.12935 * 1 2 3 26 26 H 1.09008 * 109.47351 * 214.13409 * 1 2 3 27 27 H 1.09006 * 109.47100 * 334.13384 * 1 2 3 28 28 H 0.97000 * 119.99729 * 354.74701 * 6 4 3 29 29 H 1.09000 * 113.61504 * 334.57239 * 9 7 6 30 30 H 1.09006 * 113.61569 * 203.66220 * 9 7 6 31 31 H 1.08994 * 109.47052 * 327.50143 * 12 10 9 32 32 H 1.08997 * 109.47146 * 207.50044 * 12 10 9 33 33 H 1.08004 * 126.12724 * 0.02562 * 14 13 12 34 34 H 1.08001 * 126.03938 * 179.97438 * 15 14 13 35 35 H 1.07999 * 125.90116 * 180.02562 * 16 15 14 36 36 H 1.09000 * 113.61966 * 89.12194 * 18 10 9 37 37 H 1.09000 * 113.61419 * 219.93626 * 18 10 9 38 38 H 1.07995 * 126.45814 * 179.73891 * 19 3 2 39 39 H 1.07995 * 126.06436 * 180.15770 * 20 19 3 40 40 H 1.08999 * 109.47431 * 89.96912 * 22 21 20 41 41 H 0.96701 * 113.99853 * 60.00487 * 23 22 21 42 42 H 1.48492 * 109.99961 * 58.68443 * 24 22 21 43 43 H 1.48508 * 109.99811 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1181 0.0000 4 6 1.8123 2.5124 -0.0005 5 8 0.6259 2.7650 0.0957 6 7 2.7080 3.5138 -0.1076 7 6 2.2471 4.8995 -0.2239 8 1 1.2339 4.9779 -0.6182 9 6 2.4803 5.7350 1.0458 10 6 3.8594 6.0890 0.4647 11 1 4.6442 5.3840 0.7390 12 6 4.2644 7.5468 0.6918 13 7 4.9353 7.6710 1.9882 14 6 6.1608 8.1946 2.2010 15 6 6.4140 8.1254 3.5284 16 6 5.3051 7.5400 4.1482 17 7 4.4183 7.2671 3.2258 18 6 3.2540 5.8270 -0.9244 19 6 3.5779 0.6888 -0.0056 20 6 3.5521 -0.7094 0.0008 21 6 2.2554 -1.1009 0.0004 22 6 1.7708 -2.5279 0.0010 23 8 0.5128 -2.6040 -0.6725 24 14 3.0114 -3.6055 -0.8767 25 1 -0.3634 -0.0740 -1.0249 26 1 -0.3634 -0.8507 0.5767 27 1 -0.3633 0.9248 0.4484 28 1 3.6578 3.3170 -0.1075 29 1 2.5303 5.1395 1.9573 30 1 1.8111 6.5910 1.1343 31 1 3.3750 8.1768 0.6811 32 1 4.9431 7.8630 -0.1003 33 1 6.8211 8.5968 1.4469 34 1 7.3135 8.4626 4.0221 35 1 5.1993 7.3467 5.2054 36 1 2.7965 6.7079 -1.3745 37 1 3.9292 5.3069 -1.6039 38 1 4.4583 1.3144 -0.0110 39 1 4.4131 -1.3612 0.0011 40 1 1.6540 -2.8715 1.0288 41 1 0.5419 -2.3130 -1.5942 42 1 4.3322 -3.5103 -0.2047 43 1 2.5448 -5.0153 -0.8835 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_10803936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:33:05 Heat of formation + Delta-G solvation = 97.170268 kcal Electronic energy + Delta-G solvation = -25997.717165 eV Core-core repulsion = 22241.470720 eV Total energy + Delta-G solvation = -3756.246445 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.66605 -42.03552 -41.00399 -39.27845 -37.74485 -35.25875 -33.96856 -33.36818 -31.38046 -30.90471 -28.64371 -27.52544 -26.84266 -26.68612 -24.30432 -23.26840 -21.90427 -21.67299 -21.60160 -20.55381 -20.23322 -18.92959 -18.26916 -18.00313 -17.23033 -16.96894 -16.52755 -16.14015 -16.04220 -15.81196 -15.41585 -15.27258 -14.91558 -14.83847 -14.79554 -14.51721 -14.44404 -14.35907 -13.75762 -13.66460 -13.56621 -13.39798 -13.28439 -13.06382 -12.81813 -12.25086 -12.17657 -12.03672 -11.67113 -11.57329 -11.23323 -11.19720 -10.72126 -10.32748 -10.20125 -9.80962 -9.47026 -9.15618 -4.92245 0.30802 1.03203 1.15265 1.48287 1.67445 1.70347 1.74469 1.96919 2.01219 2.24814 2.29834 3.30939 3.35228 3.46494 3.53655 3.65292 3.69189 3.79757 3.92453 4.03101 4.10613 4.24081 4.26836 4.31060 4.37017 4.40269 4.47628 4.47782 4.63543 4.71236 4.74761 4.79957 4.83800 4.93457 4.99185 5.01835 5.05688 5.08675 5.15486 5.17555 5.51431 5.68477 5.76810 5.92352 6.08493 6.21957 6.40769 6.57540 6.81290 7.06580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.402 5.402 3 C -0.080 4.080 4 C 0.588 3.412 5 O -0.584 6.584 6 N -0.688 5.688 7 C 0.114 3.886 8 H 0.088 0.912 9 C -0.138 4.138 10 C -0.109 4.109 11 H 0.089 0.911 12 C 0.134 3.866 13 N -0.375 5.375 14 C 0.054 3.946 15 C -0.294 4.294 16 C 0.024 3.976 17 N -0.332 5.332 18 C -0.113 4.113 19 C -0.124 4.124 20 C -0.213 4.213 21 C 0.016 3.984 22 C -0.059 4.059 23 O -0.554 6.554 24 Si 0.813 3.187 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.415 0.585 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.132 0.868 33 H 0.208 0.792 34 H 0.159 0.841 35 H 0.191 0.809 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.170 0.830 39 H 0.163 0.837 40 H 0.112 0.888 41 H 0.394 0.606 42 H -0.274 1.274 43 H -0.294 1.294 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.284 1.828 -6.557 9.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.074 5.074 3 C -0.193 4.193 4 C 0.378 3.622 5 O -0.467 6.467 6 N -0.339 5.339 7 C 0.009 3.991 8 H 0.106 0.894 9 C -0.176 4.176 10 C -0.128 4.128 11 H 0.107 0.893 12 C 0.014 3.986 13 N -0.158 5.158 14 C -0.093 4.093 15 C -0.323 4.323 16 C -0.162 4.162 17 N -0.154 5.154 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.237 4.237 21 C -0.102 4.102 22 C -0.168 4.168 23 O -0.362 6.362 24 Si 0.715 3.285 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.252 0.748 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.150 0.850 33 H 0.224 0.776 34 H 0.177 0.823 35 H 0.208 0.792 36 H 0.138 0.862 37 H 0.115 0.885 38 H 0.188 0.812 39 H 0.180 0.820 40 H 0.129 0.871 41 H 0.244 0.756 42 H -0.200 1.200 43 H -0.222 1.222 Dipole moment (debyes) X Y Z Total from point charges 4.146 0.687 -6.259 7.538 hybrid contribution 0.602 0.531 1.425 1.636 sum 4.747 1.217 -4.833 6.883 Atomic orbital electron populations 1.22319 0.75519 1.04635 1.04674 1.43901 1.07237 1.04378 1.51927 1.20120 0.91379 0.87215 1.20628 1.17209 0.85289 0.84327 0.75388 1.90766 1.18040 1.85326 1.52519 1.45187 1.09928 1.05171 1.73590 1.21921 0.99637 0.79827 0.97742 0.89370 1.23382 0.97457 0.99816 0.96986 1.22769 0.96763 0.95779 0.97532 0.89305 1.22081 0.99328 0.97354 0.79819 1.49007 1.13450 1.46580 1.06769 1.23200 0.88378 0.98662 0.99023 1.21852 1.02801 1.13646 0.93988 1.24297 0.92733 0.98885 1.00243 1.77336 1.24072 1.23882 0.90135 1.23287 0.97054 0.99707 0.95128 1.21628 0.94396 0.95591 1.03457 1.20910 0.95401 0.95674 1.11719 1.21453 0.91142 0.89496 1.08143 1.25234 0.94871 0.94062 1.02628 1.86469 1.30039 1.89140 1.30525 0.92952 0.73453 0.74012 0.88057 0.89263 0.88816 0.90057 0.74786 0.93714 0.89157 0.89377 0.84966 0.77552 0.82313 0.79227 0.86203 0.88472 0.81211 0.81993 0.87068 0.75556 1.19978 1.22186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 9.39 127.77 1.20 1.49 16 2 N -0.40 -2.10 3.16 -519.71 -1.64 -3.75 16 3 C -0.08 -0.45 6.88 40.35 0.28 -0.17 16 4 C 0.59 4.53 7.77 86.45 0.67 5.20 16 5 O -0.58 -8.69 14.21 -4.31 -0.06 -8.75 16 6 N -0.69 -0.48 5.25 -444.01 -2.33 -2.81 16 7 C 0.11 -0.04 4.29 45.52 0.20 0.15 16 8 H 0.09 0.32 7.53 -2.38 -0.02 0.30 16 9 C -0.14 -0.18 7.43 31.12 0.23 0.06 16 10 C -0.11 0.51 3.70 -10.27 -0.04 0.47 16 11 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 12 C 0.13 -0.73 6.35 86.38 0.55 -0.18 16 13 N -0.38 -0.58 3.68 -348.06 -1.28 -1.86 16 14 C 0.05 -0.06 11.45 83.54 0.96 0.89 16 15 C -0.29 -0.50 10.80 21.99 0.24 -0.26 16 16 C 0.02 0.12 12.03 85.24 1.03 1.15 16 17 N -0.33 -2.65 12.42 -57.02 -0.71 -3.36 16 18 C -0.11 0.92 7.39 31.12 0.23 1.15 16 19 C -0.12 -0.10 10.36 22.57 0.23 0.13 16 20 C -0.21 -0.14 9.37 22.01 0.21 0.07 16 21 C 0.02 0.03 6.14 41.34 0.25 0.29 16 22 C -0.06 0.06 2.90 71.24 0.21 0.26 16 23 O -0.55 0.66 10.48 -148.98 -1.56 -0.90 16 24 Si 0.81 -3.27 31.29 68.60 2.15 -1.12 16 25 H 0.09 0.08 8.14 -2.39 -0.02 0.07 16 26 H 0.09 0.31 7.07 -2.38 -0.02 0.29 16 27 H 0.08 0.73 6.00 -2.38 -0.01 0.72 16 28 H 0.41 -1.89 7.60 -92.71 -0.70 -2.59 16 29 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.09 0.13 7.90 -2.38 -0.02 0.11 16 31 H 0.09 -0.47 7.84 -2.39 -0.02 -0.49 16 32 H 0.13 -1.62 8.07 -2.39 -0.02 -1.64 16 33 H 0.21 -1.96 8.06 -2.91 -0.02 -1.98 16 34 H 0.16 -0.32 8.06 -2.91 -0.02 -0.35 16 35 H 0.19 0.19 8.06 -2.91 -0.02 0.16 16 36 H 0.12 -1.34 8.10 -2.39 -0.02 -1.36 16 37 H 0.10 -1.03 8.14 -2.39 -0.02 -1.05 16 38 H 0.17 -0.93 7.45 -2.91 -0.02 -0.95 16 39 H 0.16 -0.45 6.62 -2.91 -0.02 -0.47 16 40 H 0.11 0.03 7.96 -2.39 -0.02 0.01 16 41 H 0.39 -3.23 8.70 -74.06 -0.64 -3.88 16 42 H -0.27 0.11 6.76 99.48 0.67 0.78 16 43 H -0.29 -0.86 7.11 99.48 0.71 -0.15 16 Total: 0.00 -24.96 358.18 0.69 -24.26 By element: Atomic # 1 Polarization: -12.12 SS G_CDS: -0.30 Total: -12.42 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 6.43 Total: 10.70 kcal Atomic # 7 Polarization: -5.81 SS G_CDS: -5.96 Total: -11.77 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -1.62 Total: -9.65 kcal Atomic # 14 Polarization: -3.27 SS G_CDS: 2.15 Total: -1.12 kcal Total: -24.96 0.69 -24.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_10803936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.432 kcal (2) G-P(sol) polarization free energy of solvation -24.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds