Wall clock time and date at job start Sun Mar 7 2021 04:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86303 * 109.46944 * 2 1 4 4 C 1.50702 * 109.47205 * 120.00210 * 2 1 3 5 5 C 1.36449 * 120.29611 * 119.95686 * 4 2 1 6 6 C 1.40096 * 119.25033 * 179.97438 * 5 4 2 7 7 C 1.40854 * 132.86261 * 180.02562 * 6 5 4 8 8 C 1.46571 * 126.58232 * 359.97438 * 7 6 5 9 9 O 1.21718 * 119.99538 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99979 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99478 * 179.97438 * 10 8 7 12 12 H 1.08995 * 112.85653 * 336.19668 * 11 10 8 13 13 C 1.53789 * 113.61305 * 107.50470 * 11 10 8 14 14 C 1.53779 * 87.08028 * 89.11255 * 13 11 10 15 15 H 1.09003 * 113.69053 * 270.86894 * 14 13 11 16 16 C 1.53002 * 113.61394 * 139.98290 * 14 13 11 17 17 N 1.46506 * 109.47035 * 87.49742 * 16 14 13 18 18 C 1.34953 * 126.03318 * 124.71869 * 17 16 14 19 19 C 1.35318 * 107.74058 * 179.84044 * 18 17 16 20 20 C 1.39861 * 107.92377 * 0.42072 * 19 18 17 21 21 N 1.30842 * 108.20454 * 359.73714 * 20 19 18 22 22 C 1.53776 * 87.08338 * 25.43358 * 14 13 11 23 23 C 1.40551 * 106.84108 * 180.24814 * 7 6 5 24 24 N 1.30747 * 108.74408 * 359.58998 * 23 7 6 25 25 N 1.36570 * 120.23286 * 0.07425 * 6 5 4 26 26 C 1.36242 * 120.08282 * 359.95492 * 25 6 5 27 27 C 1.35191 * 120.70221 * 0.03418 * 26 25 6 28 28 H 0.96697 * 114.00071 * 59.99878 * 1 2 3 29 29 H 1.08996 * 109.47622 * 239.99922 * 2 1 3 30 30 H 1.48497 * 110.00030 * 298.67748 * 3 2 1 31 31 H 1.48505 * 109.99866 * 60.00362 * 3 2 1 32 32 H 1.07991 * 120.37327 * 0.04422 * 5 4 2 33 33 H 0.96995 * 120.00059 * 359.97438 * 10 8 7 34 34 H 1.08993 * 113.61043 * 334.56199 * 13 11 10 35 35 H 1.08991 * 113.61045 * 203.66136 * 13 11 10 36 36 H 1.09004 * 109.46930 * 327.49972 * 16 14 13 37 37 H 1.09000 * 109.47312 * 207.49916 * 16 14 13 38 38 H 1.08000 * 126.12606 * 359.97438 * 18 17 16 39 39 H 1.08004 * 126.03546 * 180.16152 * 19 18 17 40 40 H 1.07998 * 125.90240 * 179.71984 * 20 19 18 41 41 H 1.09001 * 113.61656 * 89.11737 * 22 14 13 42 42 H 1.09005 * 113.61189 * 220.01854 * 22 14 13 43 43 H 1.08005 * 125.63100 * 179.76752 * 23 7 6 44 44 H 1.07996 * 119.64628 * 180.02562 * 26 25 6 45 45 H 1.08002 * 119.83468 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.7154 -1.8209 1.1122 6 6 3.1708 -2.4638 2.2706 7 6 3.9746 -3.6009 2.4823 8 6 4.5742 -4.4513 1.4499 9 8 4.3936 -4.1987 0.2730 10 7 5.3255 -5.5128 1.8039 11 6 5.9243 -6.3629 0.7719 12 1 5.3917 -6.3148 -0.1778 13 6 7.4462 -6.1881 0.6364 14 6 7.5883 -7.2886 1.7010 15 1 7.5980 -6.9104 2.7233 16 6 8.7279 -8.2699 1.4198 17 7 9.9721 -7.7507 1.9932 18 6 10.7739 -8.3960 2.8661 19 6 11.8172 -7.5814 3.1475 20 6 11.6422 -6.3942 2.4292 21 7 10.5365 -6.4945 1.7369 22 6 6.2105 -7.7977 1.2456 23 6 4.0863 -3.7675 3.8734 24 7 3.4184 -2.8123 4.4659 25 7 2.8306 -1.9830 3.5028 26 6 2.0467 -0.8740 3.6106 27 6 1.5961 -0.2373 2.5064 28 1 -0.3933 0.4417 -0.7650 29 1 1.7924 -0.5138 -0.8899 30 1 1.5879 2.4585 -1.2242 31 1 1.5614 2.4679 1.2086 32 1 2.9829 -2.1991 0.1367 33 1 5.4697 -5.7138 2.7417 34 1 7.8046 -5.2129 0.9659 35 1 7.8331 -6.4741 -0.3416 36 1 8.8465 -8.3900 0.3429 37 1 8.4956 -9.2352 1.8696 38 1 10.6129 -9.3860 3.2665 39 1 12.6377 -7.8066 3.8128 40 1 12.3050 -5.5416 2.4438 41 1 6.2597 -8.5238 0.4341 42 1 5.5715 -8.1220 2.0670 43 1 4.6357 -4.5531 4.3710 44 1 1.7824 -0.4996 4.5885 45 1 0.9752 0.6405 2.6081 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_11618758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:33:09 Heat of formation + Delta-G solvation = 154.039614 kcal Electronic energy + Delta-G solvation = -29964.313269 eV Core-core repulsion = 25760.428532 eV Total energy + Delta-G solvation = -4203.884737 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.34859 -42.01208 -41.03518 -39.43629 -39.03310 -37.40374 -34.98809 -34.31509 -33.36273 -32.21223 -30.94147 -30.35104 -28.49054 -27.29200 -26.64134 -25.22817 -24.30662 -23.57015 -22.94165 -21.87209 -21.57857 -21.34405 -20.23997 -19.28765 -18.57290 -18.11093 -17.94024 -17.54183 -17.05253 -16.94243 -16.69659 -16.34909 -15.91124 -15.86283 -15.62680 -15.54002 -15.20452 -14.82018 -14.69035 -14.48290 -14.32341 -14.13033 -14.03731 -13.63666 -13.51559 -13.34312 -13.32286 -13.06787 -12.75469 -12.69948 -12.20151 -12.09883 -11.98468 -11.66088 -11.58277 -11.53801 -11.17062 -10.99689 -10.87184 -10.29127 -10.27478 -10.05312 -9.44100 -8.83192 -4.91153 -0.61501 -0.16116 0.97665 0.98940 1.06015 1.19749 1.59284 1.72737 1.84686 1.99817 2.02684 2.18690 2.44543 2.98455 3.13209 3.40345 3.47772 3.53343 3.61011 3.67490 3.74209 3.84249 3.85900 3.94862 4.07602 4.13066 4.17180 4.27958 4.31821 4.34577 4.40421 4.53167 4.54667 4.70288 4.76986 4.80044 4.83240 4.92632 4.96252 5.06847 5.09670 5.11375 5.12632 5.20218 5.22361 5.24974 5.61047 5.65193 5.80015 6.24306 6.24834 6.51643 6.57835 6.84348 7.27855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.087 4.087 3 Si 0.762 3.238 4 C -0.019 4.019 5 C -0.112 4.112 6 C 0.152 3.848 7 C -0.339 4.339 8 C 0.601 3.399 9 O -0.588 6.588 10 N -0.698 5.698 11 C 0.115 3.885 12 H 0.087 0.913 13 C -0.136 4.136 14 C -0.109 4.109 15 H 0.089 0.911 16 C 0.134 3.866 17 N -0.375 5.375 18 C 0.052 3.948 19 C -0.294 4.294 20 C 0.024 3.976 21 N -0.330 5.330 22 C -0.117 4.117 23 C 0.130 3.870 24 N -0.339 5.339 25 N -0.273 5.273 26 C 0.112 3.888 27 C -0.146 4.146 28 H 0.401 0.599 29 H 0.094 0.906 30 H -0.274 1.274 31 H -0.273 1.273 32 H 0.157 0.843 33 H 0.411 0.589 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.206 0.794 39 H 0.159 0.841 40 H 0.192 0.808 41 H 0.117 0.883 42 H 0.093 0.907 43 H 0.233 0.767 44 H 0.204 0.796 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.532 -2.436 1.911 3.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.194 4.194 3 Si 0.663 3.337 4 C -0.024 4.024 5 C -0.132 4.132 6 C 0.031 3.969 7 C -0.353 4.353 8 C 0.392 3.608 9 O -0.470 6.470 10 N -0.349 5.349 11 C 0.009 3.991 12 H 0.105 0.895 13 C -0.174 4.174 14 C -0.128 4.128 15 H 0.108 0.892 16 C 0.014 3.986 17 N -0.157 5.157 18 C -0.094 4.094 19 C -0.323 4.323 20 C -0.161 4.161 21 N -0.152 5.152 22 C -0.155 4.155 23 C -0.050 4.050 24 N -0.159 5.159 25 N -0.036 5.036 26 C -0.013 4.013 27 C -0.167 4.167 28 H 0.252 0.748 29 H 0.112 0.888 30 H -0.200 1.200 31 H -0.199 1.199 32 H 0.174 0.826 33 H 0.247 0.753 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.148 0.852 38 H 0.223 0.777 39 H 0.176 0.824 40 H 0.209 0.791 41 H 0.135 0.865 42 H 0.112 0.888 43 H 0.249 0.751 44 H 0.221 0.779 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.925 -0.834 1.988 2.346 hybrid contribution -0.053 -0.745 -0.330 0.817 sum -0.978 -1.579 1.658 2.490 Atomic orbital electron populations 1.86522 1.17275 1.80957 1.51374 1.24941 0.84941 1.12338 0.97178 0.93482 0.90807 0.70947 0.78503 1.19608 0.94227 0.93323 0.95278 1.20642 0.99925 0.94872 0.97733 1.19521 0.95963 0.94691 0.86744 1.19672 1.17279 1.04185 0.94205 1.16978 0.77155 0.79844 0.86862 1.90745 1.63380 1.72796 1.20058 1.45228 1.51318 1.27968 1.10357 1.21862 0.93493 0.91573 0.92175 0.89530 1.23365 0.95415 0.99003 0.99664 1.22762 0.94282 0.96223 0.99537 0.89232 1.22076 0.78603 0.97848 1.00051 1.49005 1.20156 1.11679 1.34907 1.23186 0.91924 1.00454 0.93836 1.21844 1.04103 0.95812 1.10528 1.24299 0.95527 1.00150 0.96144 1.77345 1.12247 1.00475 1.25120 1.23293 0.94455 0.94825 1.02950 1.24574 0.93447 0.95734 0.91268 1.77572 1.19730 1.07121 1.11503 1.46283 1.32352 1.19503 1.05492 1.22136 0.91390 0.84496 1.03294 1.21054 1.02709 1.02966 0.89972 0.74803 0.88766 1.19968 1.19868 0.82585 0.75253 0.93385 0.89269 0.89388 0.85199 0.77711 0.82374 0.79148 0.86508 0.88821 0.75122 0.77937 0.80518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.16 12.76 -148.98 -1.90 -1.74 16 2 C -0.09 0.15 2.81 71.24 0.20 0.35 16 3 Si 0.76 -3.05 31.97 68.60 2.19 -0.85 16 4 C -0.02 -0.04 4.53 -19.82 -0.09 -0.13 16 5 C -0.11 -0.69 9.35 22.30 0.21 -0.48 16 6 C 0.15 1.29 6.76 39.50 0.27 1.55 16 7 C -0.34 -2.49 6.17 -19.90 -0.12 -2.61 16 8 C 0.60 5.18 7.78 86.42 0.67 5.85 16 9 O -0.59 -9.20 15.30 -4.41 -0.07 -9.27 16 10 N -0.70 -0.84 5.25 -444.08 -2.33 -3.17 16 11 C 0.11 0.03 4.32 45.52 0.20 0.23 16 12 H 0.09 0.40 7.46 -2.39 -0.02 0.38 16 13 C -0.14 -0.17 7.43 31.12 0.23 0.06 16 14 C -0.11 0.47 3.70 -10.27 -0.04 0.44 16 15 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 16 C 0.13 -0.68 6.35 86.38 0.55 -0.13 16 17 N -0.37 -0.60 3.68 -348.03 -1.28 -1.88 16 18 C 0.05 -0.05 11.45 83.54 0.96 0.90 16 19 C -0.29 -0.50 10.80 21.99 0.24 -0.26 16 20 C 0.02 0.12 12.03 85.23 1.02 1.14 16 21 N -0.33 -2.54 12.42 -57.03 -0.71 -3.25 16 22 C -0.12 0.84 7.39 31.12 0.23 1.07 16 23 C 0.13 0.37 11.44 85.42 0.98 1.35 16 24 N -0.34 -2.32 12.58 -56.61 -0.71 -3.04 16 25 N -0.27 -1.77 3.86 -187.28 -0.72 -2.49 16 26 C 0.11 0.08 11.18 83.31 0.93 1.01 16 27 C -0.15 0.03 8.67 22.03 0.19 0.22 16 28 H 0.40 -3.30 8.74 -74.06 -0.65 -3.95 16 29 H 0.09 -0.36 7.71 -2.39 -0.02 -0.38 16 30 H -0.27 0.04 7.11 99.48 0.71 0.75 16 31 H -0.27 -0.09 7.07 99.48 0.70 0.61 16 32 H 0.16 1.12 7.01 -2.92 -0.02 1.10 16 33 H 0.41 -1.93 7.62 -92.71 -0.71 -2.63 16 34 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.09 0.13 7.90 -2.39 -0.02 0.11 16 36 H 0.09 -0.44 7.84 -2.38 -0.02 -0.45 16 37 H 0.13 -1.50 8.07 -2.39 -0.02 -1.52 16 38 H 0.21 -1.86 8.06 -2.91 -0.02 -1.88 16 39 H 0.16 -0.31 8.06 -2.91 -0.02 -0.34 16 40 H 0.19 0.11 8.06 -2.91 -0.02 0.09 16 41 H 0.12 -1.16 8.10 -2.39 -0.02 -1.18 16 42 H 0.09 -0.87 8.14 -2.38 -0.02 -0.89 16 43 H 0.23 -1.56 7.46 -2.91 -0.02 -1.58 16 44 H 0.20 -1.15 8.06 -2.91 -0.02 -1.17 16 45 H 0.18 -0.72 7.52 -2.91 -0.02 -0.75 16 Total: 0.00 -29.62 386.23 0.82 -28.80 By element: Atomic # 1 Polarization: -13.39 SS G_CDS: -0.27 Total: -13.66 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 6.62 Total: 10.56 kcal Atomic # 7 Polarization: -8.07 SS G_CDS: -5.76 Total: -13.83 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -1.97 Total: -11.01 kcal Atomic # 14 Polarization: -3.05 SS G_CDS: 2.19 Total: -0.85 kcal Total: -29.62 0.82 -28.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_11618758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.836 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds