Wall clock time and date at job start Sun Mar 7 2021 04:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35449 * 125.56666 * 2 1 4 4 C 1.50708 * 126.06438 * 359.93637 * 3 2 1 5 5 O 1.42902 * 109.46810 * 150.02565 * 4 3 2 6 6 Si 1.86298 * 109.46919 * 30.02810 * 4 3 2 7 7 C 1.39833 * 107.86792 * 179.70323 * 3 2 1 8 8 C 1.50703 * 126.45875 * 180.29785 * 7 3 2 9 9 C 1.37871 * 107.08508 * 0.41431 * 7 3 2 10 10 C 1.46675 * 126.23412 * 179.85034 * 9 7 3 11 11 O 1.21697 * 119.99898 * 359.71348 * 10 9 7 12 12 N 1.34777 * 119.99845 * 179.71528 * 10 9 7 13 13 C 1.46506 * 119.99689 * 179.97438 * 12 10 9 14 14 H 1.08991 * 112.90735 * 23.75464 * 13 12 10 15 15 C 1.53780 * 113.61038 * 154.99871 * 13 12 10 16 16 C 1.53785 * 87.08168 * 89.11571 * 15 13 12 17 17 H 1.08993 * 113.61752 * 270.79849 * 16 15 13 18 18 C 1.53001 * 113.61421 * 139.97709 * 16 15 13 19 19 N 1.46501 * 109.47082 * 175.00144 * 18 16 15 20 20 C 1.34951 * 126.03602 * 125.25803 * 19 18 16 21 21 C 1.35312 * 107.74772 * 180.15058 * 20 19 18 22 22 C 1.39869 * 107.91889 * 359.61173 * 21 20 19 23 23 N 1.30837 * 108.20188 * 0.23962 * 22 21 20 24 24 C 1.53778 * 113.61312 * 252.49577 * 13 12 10 25 25 N 1.35535 * 125.56270 * 179.97438 * 2 1 3 26 26 H 1.08995 * 109.46984 * 270.02047 * 1 2 3 27 27 H 1.08998 * 109.46609 * 30.02138 * 1 2 3 28 28 H 1.08998 * 109.46820 * 150.01837 * 1 2 3 29 29 H 1.08995 * 109.47461 * 270.02744 * 4 3 2 30 30 H 0.96692 * 114.00375 * 300.00109 * 5 4 3 31 31 H 1.48507 * 110.00105 * 58.68168 * 6 4 3 32 32 H 1.48504 * 109.99668 * 179.97438 * 6 4 3 33 33 H 1.08993 * 109.47297 * 270.16204 * 8 7 3 34 34 H 1.09002 * 109.46854 * 30.16605 * 8 7 3 35 35 H 1.09003 * 109.47013 * 150.16176 * 8 7 3 36 36 H 0.96998 * 120.00261 * 0.02562 * 12 10 9 37 37 H 1.08999 * 113.62007 * 334.57383 * 15 13 12 38 38 H 1.08999 * 113.61545 * 203.66221 * 15 13 12 39 39 H 1.08998 * 109.47300 * 55.00106 * 18 16 15 40 40 H 1.08997 * 109.47189 * 295.00435 * 18 16 15 41 41 H 1.08008 * 126.12704 * 0.02562 * 20 19 18 42 42 H 1.08002 * 126.04491 * 179.88067 * 21 20 19 43 43 H 1.08001 * 125.90169 * 180.26638 * 22 21 20 44 44 H 1.09003 * 113.61158 * 156.33973 * 24 13 12 45 45 H 1.09001 * 113.61921 * 25.43505 * 24 13 12 46 46 H 0.96994 * 125.68183 * 0.02635 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1018 0.0000 4 6 1.8199 2.5321 -0.0014 5 8 2.7769 3.3523 0.6721 6 14 0.1803 2.6427 0.8761 7 6 3.6270 0.6767 0.0069 8 6 4.8486 1.5592 0.0157 9 6 3.6123 -0.7019 0.0015 10 6 4.7860 -1.5815 0.0025 11 8 5.9050 -1.1030 0.0033 12 7 4.6253 -2.9197 0.0024 13 6 5.7978 -3.7982 0.0029 14 1 6.6881 -3.3172 0.4076 15 6 5.5247 -5.1895 0.5984 16 6 5.1274 -5.6319 -0.8199 17 1 4.0716 -5.4810 -1.0447 18 6 5.6177 -7.0347 -1.1842 19 7 5.0914 -7.4098 -2.4989 20 6 5.8203 -7.8160 -3.5595 21 6 4.9645 -8.0628 -4.5781 22 6 3.6673 -7.8070 -4.1217 23 7 3.7422 -7.4156 -2.8755 24 6 6.0371 -4.5067 -1.3408 25 7 2.2953 -1.1025 0.0005 26 1 -0.3633 0.0004 1.0276 27 1 -0.3632 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5135 29 1 1.7059 2.8761 -1.0293 30 1 2.9292 3.1031 1.5939 31 1 0.3152 2.1466 2.2693 32 1 -0.2987 4.0484 0.8821 33 1 5.1474 1.7763 -1.0098 34 1 4.6198 2.4911 0.5326 35 1 5.6622 1.0483 0.5307 36 1 3.7335 -3.3011 0.0014 37 1 4.6979 -5.2060 1.3084 38 1 6.4185 -5.6858 0.9762 39 1 5.2691 -7.7471 -0.4365 40 1 6.7073 -7.0426 -1.2132 41 1 6.8947 -7.9228 -3.5905 42 1 5.2347 -8.4020 -5.5672 43 1 2.7604 -7.9145 -4.6983 44 1 7.0710 -4.8164 -1.4930 45 1 5.6240 -3.9720 -2.1961 46 1 1.9834 -2.0210 0.0005 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688104_12297754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:33:14 Heat of formation + Delta-G solvation = 84.315620 kcal Electronic energy + Delta-G solvation = -28122.600112 eV Core-core repulsion = 24210.258630 eV Total energy + Delta-G solvation = -3912.341483 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.69326 -42.10256 -41.04621 -39.23295 -37.83821 -35.19380 -33.73547 -33.65061 -32.80805 -31.01051 -29.34549 -28.84014 -27.31221 -26.93756 -26.30769 -24.33367 -22.73827 -22.01824 -21.66882 -20.84920 -20.45751 -20.14838 -19.39306 -18.26321 -17.55798 -17.16997 -16.73885 -16.66725 -16.44372 -16.02606 -15.84438 -15.55050 -15.41121 -15.10087 -14.74606 -14.59800 -14.35368 -14.30378 -14.08415 -14.01273 -13.90021 -13.68107 -13.67347 -13.58918 -13.22758 -13.18023 -12.92111 -12.48967 -12.37446 -12.25208 -11.78975 -11.75392 -11.61255 -11.48208 -11.04168 -10.44920 -10.33411 -10.20727 -9.49944 -9.49292 -8.98554 -4.80443 0.40365 0.97730 1.22055 1.54022 1.67346 1.68630 1.90306 1.96231 1.99115 2.09621 2.36445 3.20428 3.29590 3.35025 3.42829 3.61224 3.63594 3.77681 3.83403 3.92197 3.98052 4.00061 4.02648 4.24918 4.31147 4.31555 4.41473 4.47326 4.47887 4.59696 4.63261 4.68069 4.72155 4.74749 4.83750 4.84475 4.89007 4.94614 4.98167 5.11968 5.15750 5.37321 5.42228 5.50369 5.72993 5.73812 5.94981 6.06815 6.26584 6.42163 6.56551 6.78075 7.14449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.067 3.933 3 C -0.211 4.211 4 C -0.034 4.034 5 O -0.527 6.527 6 Si 0.653 3.347 7 C -0.039 4.039 8 C -0.100 4.100 9 C -0.068 4.068 10 C 0.595 3.405 11 O -0.520 6.520 12 N -0.717 5.717 13 C 0.125 3.875 14 H 0.109 0.891 15 C -0.137 4.137 16 C -0.123 4.123 17 H 0.103 0.897 18 C 0.142 3.858 19 N -0.370 5.370 20 C 0.053 3.947 21 C -0.275 4.275 22 C 0.044 3.956 23 N -0.298 5.298 24 C -0.146 4.146 25 N -0.535 5.535 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.374 0.626 31 H -0.261 1.261 32 H -0.255 1.255 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.394 0.606 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.172 0.828 42 H 0.147 0.853 43 H 0.182 0.818 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.110 -5.126 -0.021 5.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.051 4.051 3 C -0.218 4.218 4 C -0.144 4.144 5 O -0.334 6.334 6 Si 0.554 3.446 7 C -0.048 4.048 8 C -0.157 4.157 9 C -0.180 4.180 10 C 0.383 3.617 11 O -0.395 6.395 12 N -0.368 5.368 13 C 0.019 3.981 14 H 0.127 0.873 15 C -0.176 4.176 16 C -0.142 4.142 17 H 0.121 0.879 18 C 0.021 3.979 19 N -0.153 5.153 20 C -0.093 4.093 21 C -0.304 4.304 22 C -0.142 4.142 23 N -0.120 5.120 24 C -0.185 4.185 25 N -0.132 5.132 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.106 0.894 29 H 0.130 0.870 30 H 0.222 0.778 31 H -0.185 1.185 32 H -0.180 1.180 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.228 0.772 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.190 0.810 42 H 0.165 0.835 43 H 0.199 0.801 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -3.285 -3.896 1.254 5.248 hybrid contribution 0.882 -1.051 -0.196 1.386 sum -2.403 -4.947 1.058 5.601 Atomic orbital electron populations 1.20424 0.87584 1.03733 1.04176 1.20162 0.93427 0.85740 1.05766 1.19552 0.92925 0.94861 1.14442 1.24251 1.01127 0.86767 1.02281 1.86551 1.61010 1.57057 1.28739 0.95549 0.82242 0.83673 0.83117 1.19800 0.94888 0.90624 0.99441 1.20565 0.93818 0.98577 1.02743 1.20066 0.82690 0.94090 1.21122 1.17004 0.87631 0.81066 0.75963 1.90844 1.24162 1.74836 1.49704 1.45536 1.09086 1.05629 1.76530 1.21760 0.89698 0.89731 0.96888 0.87253 1.23359 1.03106 0.95249 0.95896 1.22967 1.01332 0.93098 0.96809 0.87893 1.21785 0.98740 0.96465 0.80882 1.48704 1.04535 1.51263 1.10771 1.22602 0.98754 1.00094 0.87877 1.21560 0.92443 1.15167 1.01273 1.23918 0.98836 0.98841 0.92595 1.77293 0.95398 1.24141 1.15139 1.23526 1.00282 0.96616 0.98053 1.41747 1.05319 1.08239 1.57870 0.89365 0.87998 0.89387 0.87000 0.77800 1.18517 1.17985 0.91537 0.89999 0.90630 0.77223 0.90283 0.88014 0.89538 0.88345 0.81035 0.83525 0.80080 0.88805 0.90904 0.74691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.48 8.21 36.01 0.30 0.78 16 2 C 0.07 -0.07 6.84 -81.95 -0.56 -0.63 16 3 C -0.21 -0.26 5.38 -105.02 -0.57 -0.82 16 4 C -0.03 -0.02 3.04 36.01 0.11 0.09 16 5 O -0.53 -1.10 10.20 -35.23 -0.36 -1.46 16 6 Si 0.65 -0.46 26.76 -169.99 -4.55 -5.01 16 7 C -0.04 -0.12 6.15 -104.16 -0.64 -0.76 16 8 C -0.10 -0.36 9.50 36.01 0.34 -0.02 16 9 C -0.07 -0.14 7.06 -81.98 -0.58 -0.72 16 10 C 0.59 1.66 7.79 -12.85 -0.10 1.56 16 11 O -0.52 -3.25 14.40 5.19 0.07 -3.18 16 12 N -0.72 0.41 5.26 -54.32 -0.29 0.12 16 13 C 0.12 -0.13 4.32 -67.12 -0.29 -0.42 16 14 H 0.11 0.06 7.46 -51.93 -0.39 -0.33 16 15 C -0.14 0.46 7.39 -25.92 -0.19 0.27 16 16 C -0.12 0.29 3.74 -89.80 -0.34 -0.05 16 17 H 0.10 -0.09 7.96 -51.93 -0.41 -0.51 16 18 C 0.14 -0.32 6.35 -4.04 -0.03 -0.35 16 19 N -0.37 -0.26 3.68 -61.36 -0.23 -0.49 16 20 C 0.05 0.00 11.45 -17.22 -0.20 -0.20 16 21 C -0.27 -0.19 10.80 -40.01 -0.43 -0.63 16 22 C 0.04 0.07 12.03 -17.36 -0.21 -0.14 16 23 N -0.30 -0.82 12.27 30.62 0.38 -0.45 16 24 C -0.15 0.19 7.43 -25.92 -0.19 0.00 16 25 N -0.53 0.68 5.99 -5.69 -0.03 0.65 16 26 H 0.09 -0.46 7.13 -51.93 -0.37 -0.83 16 27 H 0.10 -0.60 5.17 -51.93 -0.27 -0.87 16 28 H 0.09 -0.56 8.14 -51.93 -0.42 -0.98 16 29 H 0.11 0.02 7.96 -51.93 -0.41 -0.39 16 30 H 0.37 -0.09 8.46 45.56 0.39 0.30 16 31 H -0.26 -0.46 7.11 56.52 0.40 -0.06 16 32 H -0.25 -0.70 7.11 56.52 0.40 -0.30 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.23 5.46 -51.93 -0.28 -0.05 16 35 H 0.07 0.36 6.49 -51.93 -0.34 0.03 16 36 H 0.39 -1.17 7.83 -40.82 -0.32 -1.49 16 37 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 38 H 0.10 -0.46 8.10 -51.93 -0.42 -0.88 16 39 H 0.09 -0.23 8.14 -51.93 -0.42 -0.65 16 40 H 0.10 -0.43 7.77 -51.93 -0.40 -0.83 16 41 H 0.17 -0.54 8.06 -52.48 -0.42 -0.97 16 42 H 0.15 -0.15 8.06 -52.49 -0.42 -0.57 16 43 H 0.18 -0.20 8.06 -52.49 -0.42 -0.63 16 44 H 0.09 -0.21 7.90 -51.93 -0.41 -0.62 16 45 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 46 H 0.42 -1.84 8.19 -40.82 -0.33 -2.17 16 LS Contribution 371.03 15.07 5.59 5.59 Total: 0.00 -10.72 371.03 -9.54 -20.27 By element: Atomic # 1 Polarization: -7.45 SS G_CDS: -6.56 Total: -14.01 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -3.57 Total: -2.04 kcal Atomic # 7 Polarization: 0.01 SS G_CDS: -0.17 Total: -0.16 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.28 Total: -4.64 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: -4.55 Total: -5.01 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -10.72 -9.54 -20.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_12297754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.581 kcal (2) G-P(sol) polarization free energy of solvation -10.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds