Wall clock time and date at job start Sun Mar 7 2021 04:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35449 * 125.56666 * 2 1 4 4 C 1.50708 * 126.06438 * 359.93637 * 3 2 1 5 5 O 1.42902 * 109.46810 * 150.02565 * 4 3 2 6 6 Si 1.86298 * 109.46919 * 30.02810 * 4 3 2 7 7 C 1.39833 * 107.86792 * 179.70323 * 3 2 1 8 8 C 1.50703 * 126.45875 * 180.29785 * 7 3 2 9 9 C 1.37871 * 107.08508 * 0.41431 * 7 3 2 10 10 C 1.46675 * 126.23412 * 179.85034 * 9 7 3 11 11 O 1.21697 * 119.99898 * 359.71348 * 10 9 7 12 12 N 1.34777 * 119.99845 * 179.71528 * 10 9 7 13 13 C 1.46506 * 119.99689 * 179.97438 * 12 10 9 14 14 H 1.08991 * 112.90735 * 23.75464 * 13 12 10 15 15 C 1.53780 * 113.61038 * 154.99871 * 13 12 10 16 16 C 1.53785 * 87.08168 * 89.11571 * 15 13 12 17 17 H 1.08993 * 113.61752 * 270.79849 * 16 15 13 18 18 C 1.53001 * 113.61421 * 139.97709 * 16 15 13 19 19 N 1.46501 * 109.47082 * 175.00144 * 18 16 15 20 20 C 1.34951 * 126.03602 * 125.25803 * 19 18 16 21 21 C 1.35312 * 107.74772 * 180.15058 * 20 19 18 22 22 C 1.39869 * 107.91889 * 359.61173 * 21 20 19 23 23 N 1.30837 * 108.20188 * 0.23962 * 22 21 20 24 24 C 1.53778 * 113.61312 * 252.49577 * 13 12 10 25 25 N 1.35535 * 125.56270 * 179.97438 * 2 1 3 26 26 H 1.08995 * 109.46984 * 270.02047 * 1 2 3 27 27 H 1.08998 * 109.46609 * 30.02138 * 1 2 3 28 28 H 1.08998 * 109.46820 * 150.01837 * 1 2 3 29 29 H 1.08995 * 109.47461 * 270.02744 * 4 3 2 30 30 H 0.96692 * 114.00375 * 300.00109 * 5 4 3 31 31 H 1.48507 * 110.00105 * 58.68168 * 6 4 3 32 32 H 1.48504 * 109.99668 * 179.97438 * 6 4 3 33 33 H 1.08993 * 109.47297 * 270.16204 * 8 7 3 34 34 H 1.09002 * 109.46854 * 30.16605 * 8 7 3 35 35 H 1.09003 * 109.47013 * 150.16176 * 8 7 3 36 36 H 0.96998 * 120.00261 * 0.02562 * 12 10 9 37 37 H 1.08999 * 113.62007 * 334.57383 * 15 13 12 38 38 H 1.08999 * 113.61545 * 203.66221 * 15 13 12 39 39 H 1.08998 * 109.47300 * 55.00106 * 18 16 15 40 40 H 1.08997 * 109.47189 * 295.00435 * 18 16 15 41 41 H 1.08008 * 126.12704 * 0.02562 * 20 19 18 42 42 H 1.08002 * 126.04491 * 179.88067 * 21 20 19 43 43 H 1.08001 * 125.90169 * 180.26638 * 22 21 20 44 44 H 1.09003 * 113.61158 * 156.33973 * 24 13 12 45 45 H 1.09001 * 113.61921 * 25.43505 * 24 13 12 46 46 H 0.96994 * 125.68183 * 0.02635 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1018 0.0000 4 6 1.8199 2.5321 -0.0014 5 8 2.7769 3.3523 0.6721 6 14 0.1803 2.6427 0.8761 7 6 3.6270 0.6767 0.0069 8 6 4.8486 1.5592 0.0157 9 6 3.6123 -0.7019 0.0015 10 6 4.7860 -1.5815 0.0025 11 8 5.9050 -1.1030 0.0033 12 7 4.6253 -2.9197 0.0024 13 6 5.7978 -3.7982 0.0029 14 1 6.6881 -3.3172 0.4076 15 6 5.5247 -5.1895 0.5984 16 6 5.1274 -5.6319 -0.8199 17 1 4.0716 -5.4810 -1.0447 18 6 5.6177 -7.0347 -1.1842 19 7 5.0914 -7.4098 -2.4989 20 6 5.8203 -7.8160 -3.5595 21 6 4.9645 -8.0628 -4.5781 22 6 3.6673 -7.8070 -4.1217 23 7 3.7422 -7.4156 -2.8755 24 6 6.0371 -4.5067 -1.3408 25 7 2.2953 -1.1025 0.0005 26 1 -0.3633 0.0004 1.0276 27 1 -0.3632 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5135 29 1 1.7059 2.8761 -1.0293 30 1 2.9292 3.1031 1.5939 31 1 0.3152 2.1466 2.2693 32 1 -0.2987 4.0484 0.8821 33 1 5.1474 1.7763 -1.0098 34 1 4.6198 2.4911 0.5326 35 1 5.6622 1.0483 0.5307 36 1 3.7335 -3.3011 0.0014 37 1 4.6979 -5.2060 1.3084 38 1 6.4185 -5.6858 0.9762 39 1 5.2691 -7.7471 -0.4365 40 1 6.7073 -7.0426 -1.2132 41 1 6.8947 -7.9228 -3.5905 42 1 5.2347 -8.4020 -5.5672 43 1 2.7604 -7.9145 -4.6983 44 1 7.0710 -4.8164 -1.4930 45 1 5.6240 -3.9720 -2.1961 46 1 1.9834 -2.0210 0.0005 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_12297754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:33:14 Heat of formation + Delta-G solvation = 81.739732 kcal Electronic energy + Delta-G solvation = -28122.711811 eV Core-core repulsion = 24210.258630 eV Total energy + Delta-G solvation = -3912.453182 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.72947 -42.06635 -41.04447 -39.32935 -37.93609 -35.23663 -33.74782 -33.66431 -32.78586 -30.99581 -29.33364 -28.79861 -27.36045 -26.78524 -26.35888 -24.26264 -22.77618 -21.99094 -21.64540 -20.86115 -20.53312 -20.09675 -19.42487 -18.19283 -17.64131 -17.18779 -16.74226 -16.67375 -16.41600 -16.00584 -15.94876 -15.52612 -15.38463 -15.08120 -14.78101 -14.57924 -14.36760 -14.28635 -14.04658 -13.91829 -13.83877 -13.73600 -13.56359 -13.50046 -13.29834 -13.15100 -12.81312 -12.58860 -12.34522 -12.25748 -11.83988 -11.70290 -11.59389 -11.38384 -11.25259 -10.55453 -10.35168 -10.25536 -9.58142 -9.48017 -9.00831 -4.77729 0.30406 0.99656 1.20966 1.64555 1.65903 1.68948 1.87801 1.94849 2.04088 2.09129 2.20024 3.34792 3.40196 3.45618 3.49326 3.71727 3.78916 3.81025 3.94483 3.95184 4.07916 4.17641 4.18473 4.38306 4.48077 4.49654 4.60897 4.64224 4.64817 4.67550 4.70220 4.74795 4.77107 4.80677 4.86186 4.90217 4.92311 5.00758 5.06567 5.10915 5.15698 5.22293 5.29905 5.47247 5.67056 5.75255 5.79872 6.17297 6.31348 6.46790 6.56561 6.77357 7.02223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.087 3.913 3 C -0.232 4.232 4 C -0.052 4.052 5 O -0.548 6.548 6 Si 0.760 3.240 7 C -0.068 4.068 8 C -0.093 4.093 9 C -0.085 4.085 10 C 0.590 3.410 11 O -0.566 6.566 12 N -0.702 5.702 13 C 0.113 3.887 14 H 0.091 0.909 15 C -0.118 4.118 16 C -0.112 4.112 17 H 0.088 0.912 18 C 0.135 3.865 19 N -0.374 5.374 20 C 0.051 3.949 21 C -0.294 4.294 22 C 0.029 3.971 23 N -0.333 5.333 24 C -0.143 4.143 25 N -0.519 5.519 26 H 0.103 0.897 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.381 0.619 31 H -0.290 1.290 32 H -0.304 1.304 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.407 0.593 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.203 0.797 42 H 0.158 0.842 43 H 0.196 0.804 44 H 0.106 0.894 45 H 0.047 0.953 46 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.422 -6.914 0.245 8.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.033 4.033 3 C -0.239 4.239 4 C -0.160 4.160 5 O -0.356 6.356 6 Si 0.665 3.335 7 C -0.077 4.077 8 C -0.150 4.150 9 C -0.197 4.197 10 C 0.380 3.620 11 O -0.445 6.445 12 N -0.353 5.353 13 C 0.008 3.992 14 H 0.109 0.891 15 C -0.157 4.157 16 C -0.131 4.131 17 H 0.107 0.893 18 C 0.015 3.985 19 N -0.157 5.157 20 C -0.095 4.095 21 C -0.324 4.324 22 C -0.156 4.156 23 N -0.156 5.156 24 C -0.182 4.182 25 N -0.117 5.117 26 H 0.121 0.879 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.230 0.770 31 H -0.217 1.217 32 H -0.232 1.232 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.243 0.757 37 H 0.105 0.895 38 H 0.140 0.860 39 H 0.111 0.889 40 H 0.142 0.858 41 H 0.219 0.781 42 H 0.176 0.824 43 H 0.213 0.787 44 H 0.124 0.876 45 H 0.066 0.934 46 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -4.612 -5.759 1.506 7.530 hybrid contribution 1.313 -0.476 -0.293 1.427 sum -3.299 -6.235 1.213 7.158 Atomic orbital electron populations 1.20717 0.84431 1.05687 1.05754 1.20725 0.95110 0.84805 1.02694 1.19667 0.92466 0.95817 1.15905 1.24650 1.02096 0.86442 1.02840 1.86511 1.61894 1.57667 1.29499 0.94431 0.79119 0.79954 0.79996 1.19939 0.95463 0.91351 1.00959 1.20423 0.94034 0.98880 1.01641 1.19920 0.83779 0.93746 1.22240 1.17204 0.87282 0.82030 0.75533 1.90813 1.25793 1.75763 1.52106 1.45421 1.10094 1.04684 1.75091 1.21887 0.89018 0.90581 0.97743 0.89064 1.23310 1.04184 0.92841 0.95334 1.22797 1.00157 0.92855 0.97273 0.89342 1.22057 1.00225 0.96197 0.79989 1.48953 1.04024 1.50958 1.11736 1.23152 1.00116 0.98890 0.87388 1.21861 0.92414 1.15848 1.02254 1.24309 0.99979 0.98673 0.92631 1.77216 0.96978 1.25465 1.15895 1.23522 1.01139 0.96825 0.96708 1.41711 1.04062 1.09271 1.56668 0.87876 0.86396 0.86608 0.86903 0.76999 1.21716 1.23242 0.92878 0.89606 0.92443 0.75702 0.89472 0.86041 0.88854 0.85783 0.78071 0.82393 0.78682 0.87588 0.93447 0.72734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 1.34 8.21 71.24 0.59 1.93 16 2 C 0.09 -0.28 6.84 41.34 0.28 0.00 16 3 C -0.23 -0.68 5.38 -20.12 -0.11 -0.79 16 4 C -0.05 -0.10 3.04 71.24 0.22 0.12 16 5 O -0.55 -3.15 10.20 -148.98 -1.52 -4.67 16 6 Si 0.76 -1.46 26.76 68.60 1.84 0.37 16 7 C -0.07 -0.56 6.15 -19.56 -0.12 -0.68 16 8 C -0.09 -0.98 9.50 71.24 0.68 -0.30 16 9 C -0.09 -0.45 7.06 40.35 0.28 -0.17 16 10 C 0.59 4.46 7.79 86.45 0.67 5.14 16 11 O -0.57 -8.88 14.40 -4.34 -0.06 -8.94 16 12 N -0.70 0.18 5.26 -444.00 -2.33 -2.16 16 13 C 0.11 -0.17 4.32 45.52 0.20 0.03 16 14 H 0.09 0.24 7.46 -2.39 -0.02 0.22 16 15 C -0.12 0.93 7.39 31.12 0.23 1.16 16 16 C -0.11 0.59 3.74 -10.26 -0.04 0.55 16 17 H 0.09 -0.16 7.96 -2.39 -0.02 -0.18 16 18 C 0.14 -0.79 6.35 86.38 0.55 -0.24 16 19 N -0.37 -0.31 3.68 -348.06 -1.28 -1.59 16 20 C 0.05 -0.05 11.45 83.54 0.96 0.91 16 21 C -0.29 -0.38 10.80 21.99 0.24 -0.14 16 22 C 0.03 0.10 12.03 85.24 1.02 1.12 16 23 N -0.33 -1.93 12.27 -57.02 -0.70 -2.63 16 24 C -0.14 0.33 7.43 31.12 0.23 0.56 16 25 N -0.52 1.61 5.99 -171.93 -1.03 0.58 16 26 H 0.10 -1.42 7.13 -2.39 -0.02 -1.44 16 27 H 0.12 -1.74 5.17 -2.39 -0.01 -1.75 16 28 H 0.12 -1.93 8.14 -2.39 -0.02 -1.95 16 29 H 0.11 0.11 7.96 -2.39 -0.02 0.09 16 30 H 0.38 0.49 8.46 -74.06 -0.63 -0.13 16 31 H -0.29 -0.86 7.11 99.48 0.71 -0.16 16 32 H -0.30 -1.89 7.11 99.48 0.71 -1.18 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 0.74 5.46 -2.39 -0.01 0.73 16 35 H 0.06 0.79 6.49 -2.39 -0.02 0.77 16 36 H 0.41 -2.41 7.83 -92.71 -0.73 -3.14 16 37 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H 0.12 -1.37 8.10 -2.39 -0.02 -1.39 16 39 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.12 -1.37 7.77 -2.39 -0.02 -1.39 16 41 H 0.20 -1.66 8.06 -2.91 -0.02 -1.68 16 42 H 0.16 -0.35 8.06 -2.91 -0.02 -0.37 16 43 H 0.20 -0.32 8.06 -2.91 -0.02 -0.35 16 44 H 0.11 -0.51 7.90 -2.39 -0.02 -0.53 16 45 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.43 -4.42 8.19 -92.71 -0.76 -5.18 16 Total: 0.00 -29.26 371.03 -0.25 -29.51 By element: Atomic # 1 Polarization: -18.64 SS G_CDS: -1.04 Total: -19.68 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 5.88 Total: 9.20 kcal Atomic # 7 Polarization: -0.45 SS G_CDS: -5.35 Total: -5.80 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -1.58 Total: -13.62 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: 1.84 Total: 0.37 kcal Total: -29.26 -0.25 -29.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_12297754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.253 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds