Wall clock time and date at job start Sun Mar 7 2021 04:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35657 * 116.99875 * 2 1 4 4 C 1.38407 * 120.12007 * 359.97438 * 3 2 1 5 5 C 1.38726 * 120.03057 * 180.02562 * 4 3 2 6 6 O 1.35705 * 119.86483 * 179.97438 * 5 4 3 7 7 C 1.42911 * 116.99674 * 0.02562 * 6 5 4 8 8 C 1.39153 * 120.27204 * 0.02562 * 5 4 3 9 9 C 1.50695 * 119.87553 * 180.02562 * 8 5 4 10 10 O 1.42902 * 109.47368 * 75.00175 * 9 8 5 11 11 Si 1.86302 * 109.46734 * 195.00030 * 9 8 5 12 12 C 1.37583 * 120.23887 * 359.74093 * 8 5 4 13 13 C 1.39816 * 119.96580 * 0.51085 * 12 8 5 14 14 C 1.47296 * 120.13208 * 179.76894 * 13 12 8 15 15 O 1.21629 * 119.99866 * 179.72128 * 14 13 12 16 16 N 1.34774 * 120.00531 * 359.72496 * 14 13 12 17 17 C 1.46496 * 120.00183 * 180.02562 * 16 14 13 18 18 H 1.08998 * 112.91182 * 336.24567 * 17 16 14 19 19 C 1.53948 * 113.54045 * 107.50295 * 17 16 14 20 20 C 1.53779 * 87.02296 * 89.18746 * 19 17 16 21 21 H 1.09001 * 113.61578 * 270.77167 * 20 19 17 22 22 C 1.52995 * 113.61758 * 139.95215 * 20 19 17 23 23 N 1.46506 * 109.47276 * 85.86437 * 22 20 19 24 24 C 1.34948 * 126.03813 * 124.71394 * 23 22 20 25 25 C 1.35318 * 107.74290 * 179.84379 * 24 23 22 26 26 C 1.39870 * 107.92236 * 0.42279 * 25 24 23 27 27 N 1.30841 * 108.19742 * 359.73723 * 26 25 24 28 28 C 1.53780 * 87.17218 * 25.36302 * 20 19 17 29 29 H 1.08997 * 109.46937 * 60.00087 * 1 2 3 30 30 H 1.09003 * 109.47270 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47278 * 299.99971 * 1 2 3 32 32 H 1.07997 * 119.98169 * 0.02562 * 4 3 2 33 33 H 1.09001 * 109.46826 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.46643 * 299.99534 * 7 6 5 35 35 H 1.08995 * 109.47003 * 59.99961 * 7 6 5 36 36 H 1.09005 * 109.47485 * 314.99641 * 9 8 5 37 37 H 0.96694 * 114.00295 * 59.99209 * 10 9 8 38 38 H 1.48495 * 110.00167 * 58.68246 * 11 9 8 39 39 H 1.48505 * 109.99917 * 180.02562 * 11 9 8 40 40 H 1.07997 * 120.01525 * 180.26107 * 12 8 5 41 41 H 0.97006 * 119.99672 * 359.97438 * 16 14 13 42 42 H 1.09000 * 113.66966 * 334.65843 * 19 17 16 43 43 H 1.09003 * 113.61434 * 203.70510 * 19 17 16 44 44 H 1.08997 * 109.47344 * 325.86209 * 22 20 19 45 45 H 1.08998 * 109.47310 * 205.86235 * 22 20 19 46 46 H 1.08002 * 126.12338 * 359.97438 * 24 23 22 47 47 H 1.08000 * 126.03532 * 180.16268 * 25 24 23 48 48 H 1.07995 * 125.90010 * 179.72385 * 26 25 24 49 49 H 1.08996 * 113.61727 * 89.16153 * 28 20 19 50 50 H 1.09002 * 113.61574 * 220.06698 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2935 2.3711 -0.0005 5 6 1.9252 3.6062 -0.0011 6 8 1.1851 4.7437 -0.0021 7 6 -0.2360 4.5930 -0.0021 8 6 3.3145 3.6834 -0.0016 9 6 3.9915 5.0298 -0.0016 10 8 3.8945 5.6118 1.2999 11 14 5.7860 4.8225 -0.4570 12 6 4.0724 2.5351 0.0038 13 6 3.4461 1.2851 -0.0010 14 6 4.2539 0.0534 -0.0004 15 8 3.7066 -1.0328 0.0005 16 7 5.5995 0.1298 -0.0009 17 6 6.4028 -1.0952 -0.0009 18 1 5.8672 -1.9539 0.4039 19 6 7.0945 -1.3769 -1.3471 20 6 8.2746 -0.5410 -0.8243 21 1 8.1901 0.5222 -1.0489 22 6 9.6438 -1.1182 -1.1891 23 7 10.0343 -0.6454 -2.5197 24 6 11.1764 0.0040 -2.8279 25 6 11.1582 0.2626 -4.1560 26 6 9.9598 -0.2377 -4.6755 27 7 9.2853 -0.7821 -3.6955 28 6 7.8088 -0.9099 0.5941 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2149 2.3164 -0.0005 33 1 -0.7056 5.5767 -0.0034 34 1 -0.5430 4.0431 -0.8916 35 1 -0.5432 4.0446 0.8884 36 1 3.5052 5.6810 -0.7280 37 1 4.3069 5.0850 1.9981 38 1 5.9006 4.1890 -1.7951 39 1 6.4651 6.1432 -0.4600 40 1 5.1504 2.5993 0.0076 41 1 6.0360 0.9961 -0.0020 42 1 6.5872 -0.9295 -2.2018 43 1 7.3384 -2.4281 -1.5011 44 1 9.5902 -2.2069 -1.1917 45 1 10.3823 -0.7925 -0.4566 46 1 11.9647 0.2680 -2.1384 47 1 11.9306 0.7696 -4.7152 48 1 9.6454 -0.1836 -5.7073 49 1 8.2482 -1.8331 0.9718 50 1 7.8771 -0.0859 1.3043 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_12297780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:33:18 Heat of formation + Delta-G solvation = 6.593469 kcal Electronic energy + Delta-G solvation = -34581.010738 eV Core-core repulsion = 29965.134357 eV Total energy + Delta-G solvation = -4615.876382 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.18589 -41.97297 -41.00052 -40.12787 -39.20167 -38.45682 -37.00216 -35.00990 -33.49985 -32.27036 -31.65334 -30.88211 -29.02159 -28.61459 -28.04488 -26.62342 -26.16458 -25.03713 -23.97039 -22.80278 -21.87176 -21.73646 -21.51801 -20.31335 -19.99021 -18.92413 -18.20199 -18.05005 -17.90080 -17.25940 -17.14934 -16.64030 -16.49485 -16.39612 -16.23738 -15.88682 -15.82691 -15.71416 -15.51534 -15.38529 -15.04634 -14.80628 -14.59382 -14.36770 -14.23605 -14.01540 -13.68770 -13.59018 -13.42242 -13.33294 -13.26762 -12.74951 -12.69299 -12.57055 -12.54829 -12.31451 -12.12884 -12.01820 -11.68598 -11.57842 -11.53238 -11.14934 -10.95424 -10.42211 -10.28865 -10.08451 -9.94556 -9.43849 -9.22660 -5.11578 -0.30037 0.04299 1.06482 1.25946 1.60296 1.71056 1.74349 1.95406 1.99290 2.06905 2.08298 2.15246 2.57167 3.40055 3.41921 3.48832 3.55248 3.59833 3.70656 3.76212 3.80496 3.88704 4.06885 4.09183 4.12969 4.14578 4.20047 4.23740 4.24759 4.26522 4.30640 4.41389 4.45144 4.55415 4.60299 4.63711 4.71245 4.74755 4.81222 4.85063 4.85756 4.95788 4.96724 4.98956 5.10018 5.13836 5.20015 5.22834 5.26476 5.64190 5.79347 5.99882 6.25397 6.25801 6.52662 6.82695 6.84366 7.24141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.304 6.304 3 C 0.217 3.783 4 C -0.311 4.311 5 C 0.213 3.787 6 O -0.313 6.313 7 C 0.012 3.988 8 C -0.204 4.204 9 C -0.058 4.058 10 O -0.552 6.552 11 Si 0.771 3.229 12 C 0.009 3.991 13 C -0.227 4.227 14 C 0.565 3.435 15 O -0.564 6.564 16 N -0.701 5.701 17 C 0.112 3.888 18 H 0.086 0.914 19 C -0.139 4.139 20 C -0.112 4.112 21 H 0.093 0.907 22 C 0.134 3.866 23 N -0.374 5.374 24 C 0.055 3.945 25 C -0.295 4.295 26 C 0.022 3.978 27 N -0.331 5.331 28 C -0.113 4.113 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.119 0.881 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.393 0.607 38 H -0.282 1.282 39 H -0.291 1.291 40 H 0.166 0.834 41 H 0.410 0.590 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.134 0.866 46 H 0.209 0.791 47 H 0.158 0.842 48 H 0.189 0.811 49 H 0.117 0.883 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.992 2.105 4.803 6.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.214 6.214 3 C 0.168 3.832 4 C -0.330 4.330 5 C 0.165 3.835 6 O -0.225 6.225 7 C -0.082 4.082 8 C -0.206 4.206 9 C -0.167 4.167 10 O -0.359 6.359 11 Si 0.676 3.324 12 C -0.009 4.009 13 C -0.231 4.231 14 C 0.354 3.646 15 O -0.443 6.443 16 N -0.353 5.353 17 C 0.007 3.993 18 H 0.104 0.896 19 C -0.178 4.178 20 C -0.131 4.131 21 H 0.111 0.889 22 C 0.014 3.986 23 N -0.157 5.157 24 C -0.091 4.091 25 C -0.324 4.324 26 C -0.163 4.163 27 N -0.153 5.153 28 C -0.152 4.152 29 H 0.088 0.912 30 H 0.132 0.868 31 H 0.091 0.909 32 H 0.180 0.820 33 H 0.137 0.863 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.243 0.757 38 H -0.209 1.209 39 H -0.218 1.218 40 H 0.183 0.817 41 H 0.248 0.752 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.152 0.848 46 H 0.225 0.775 47 H 0.175 0.825 48 H 0.206 0.794 49 H 0.135 0.865 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.920 1.315 4.404 4.982 hybrid contribution -0.623 0.851 -1.069 1.501 sum 1.297 2.166 3.336 4.184 Atomic orbital electron populations 1.23477 0.76514 1.05789 1.02630 1.86368 1.23213 1.25861 1.86003 1.18987 0.91131 0.84707 0.88367 1.21419 1.02026 0.90735 1.18837 1.18942 0.90981 0.84920 0.88653 1.86143 1.21114 1.28728 1.86499 1.23470 0.76242 1.05862 1.02631 1.19608 0.90929 0.96761 1.13255 1.25008 1.11008 0.91591 0.89127 1.86508 1.82635 1.50141 1.16664 0.94383 0.73925 0.81411 0.82692 1.20824 0.99592 0.88755 0.91685 1.19149 0.90821 0.93848 1.19295 1.18034 0.82564 0.88313 0.75655 1.90820 1.72346 1.30300 1.50869 1.45429 1.04870 1.09919 1.75104 1.21931 0.92192 0.87747 0.97478 0.89613 1.23410 0.96993 1.00672 0.96723 1.22814 0.92789 1.00124 0.97396 0.88858 1.22096 0.98058 1.00205 0.78246 1.49020 1.14476 1.44258 1.07909 1.23197 0.91580 0.96443 0.97928 1.21842 1.01738 1.13780 0.95077 1.24273 0.94445 0.97959 0.99623 1.77344 1.20674 1.25238 0.92060 1.23290 0.91848 1.04915 0.95122 0.91221 0.86847 0.90869 0.81951 0.86284 0.91332 0.91116 0.88371 0.75699 1.20906 1.21816 0.81747 0.75177 0.93696 0.89480 0.89513 0.84810 0.77480 0.82454 0.79406 0.86482 0.87870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.30 -2.80 8.56 -68.77 -0.59 -3.39 16 3 C 0.22 1.51 6.70 22.82 0.15 1.66 16 4 C -0.31 -0.82 8.01 22.43 0.18 -0.64 16 5 C 0.21 0.75 6.67 22.61 0.15 0.90 16 6 O -0.31 -1.06 9.80 -90.26 -0.88 -1.94 16 7 C 0.01 -0.05 9.80 113.37 1.11 1.06 16 8 C -0.20 -0.33 5.27 -19.80 -0.10 -0.43 16 9 C -0.06 -0.04 2.37 71.23 0.17 0.13 16 10 O -0.55 -0.56 12.88 -148.98 -1.92 -2.48 16 11 Si 0.77 -2.32 29.91 68.60 2.05 -0.27 16 12 C 0.01 0.00 8.14 22.50 0.18 0.18 16 13 C -0.23 -1.29 5.89 -20.00 -0.12 -1.40 16 14 C 0.57 4.80 7.76 86.63 0.67 5.48 16 15 O -0.56 -9.80 14.75 16.84 0.25 -9.55 16 16 N -0.70 -0.41 5.21 -443.14 -2.31 -2.72 16 17 C 0.11 -0.02 4.33 45.58 0.20 0.18 16 18 H 0.09 0.39 7.46 -2.39 -0.02 0.37 16 19 C -0.14 -0.20 7.44 31.18 0.23 0.03 16 20 C -0.11 0.58 3.69 -10.27 -0.04 0.54 16 21 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 22 C 0.13 -0.78 6.33 86.38 0.55 -0.23 16 23 N -0.37 -0.47 3.68 -348.06 -1.28 -1.75 16 24 C 0.06 -0.08 11.45 83.54 0.96 0.88 16 25 C -0.30 -0.52 10.80 21.99 0.24 -0.28 16 26 C 0.02 0.12 12.03 85.24 1.03 1.14 16 27 N -0.33 -2.62 12.42 -57.02 -0.71 -3.33 16 28 C -0.11 0.98 7.39 31.12 0.23 1.21 16 29 H 0.07 -0.23 7.66 -2.39 -0.02 -0.25 16 30 H 0.11 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.07 -0.29 7.66 -2.38 -0.02 -0.31 16 32 H 0.16 -0.38 4.50 -2.91 -0.01 -0.40 16 33 H 0.12 -0.82 8.14 -2.39 -0.02 -0.84 16 34 H 0.07 -0.42 7.65 -2.39 -0.02 -0.44 16 35 H 0.07 -0.44 7.65 -2.39 -0.02 -0.46 16 36 H 0.10 0.37 7.82 -2.38 -0.02 0.35 16 37 H 0.39 -3.13 8.70 -74.06 -0.64 -3.78 16 38 H -0.28 -0.63 7.11 99.48 0.71 0.08 16 39 H -0.29 -1.20 7.11 99.48 0.71 -0.49 16 40 H 0.17 -1.26 3.44 -2.91 -0.01 -1.27 16 41 H 0.41 -2.49 6.72 -92.70 -0.62 -3.11 16 42 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.09 0.18 7.92 -2.39 -0.02 0.16 16 44 H 0.09 -0.47 7.87 -2.39 -0.02 -0.49 16 45 H 0.13 -1.73 8.07 -2.39 -0.02 -1.75 16 46 H 0.21 -2.04 8.06 -2.91 -0.02 -2.06 16 47 H 0.16 -0.28 8.06 -2.91 -0.02 -0.31 16 48 H 0.19 0.25 8.06 -2.91 -0.02 0.23 16 49 H 0.12 -1.32 8.10 -2.39 -0.02 -1.34 16 50 H 0.10 -1.26 8.14 -2.39 -0.02 -1.28 16 Total: 0.00 -32.94 411.38 1.28 -31.66 By element: Atomic # 1 Polarization: -17.53 SS G_CDS: -0.23 Total: -17.76 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.90 Total: 11.52 kcal Atomic # 7 Polarization: -3.50 SS G_CDS: -4.30 Total: -7.80 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -3.14 Total: -17.36 kcal Atomic # 14 Polarization: -2.32 SS G_CDS: 2.05 Total: -0.27 kcal Total: -32.94 1.28 -31.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_12297780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.257 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds