Wall clock time and date at job start Sun Mar 7 2021 04:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47349 * 2 1 4 4 C 1.50703 * 109.47055 * 240.00160 * 2 1 3 5 5 C 1.37850 * 119.88862 * 300.00547 * 4 2 1 6 6 C 1.39664 * 119.87577 * 179.97438 * 5 4 2 7 7 C 1.47695 * 120.16722 * 180.02562 * 6 5 4 8 8 O 1.21565 * 120.00030 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99836 * 359.97438 * 7 6 5 10 10 C 1.46494 * 120.00109 * 180.02562 * 9 7 6 11 11 H 1.09007 * 112.85031 * 336.19227 * 10 9 7 12 12 C 1.53785 * 113.61570 * 107.49860 * 10 9 7 13 13 C 1.53784 * 87.08038 * 89.11896 * 12 10 9 14 14 H 1.08999 * 113.61290 * 270.88531 * 13 12 10 15 15 C 1.53001 * 113.61443 * 139.98109 * 13 12 10 16 16 N 1.46500 * 109.47100 * 87.50110 * 15 13 12 17 17 C 1.34947 * 126.03283 * 124.99610 * 16 15 13 18 18 C 1.35321 * 107.74063 * 179.97438 * 17 16 15 19 19 C 1.39865 * 107.92245 * 0.02562 * 18 17 16 20 20 N 1.30843 * 108.20083 * 359.74142 * 19 18 17 21 21 C 1.53782 * 113.61492 * 204.99957 * 10 9 7 22 22 C 1.39828 * 119.66750 * 359.97438 * 6 5 4 23 23 F 1.35097 * 120.10756 * 179.97438 * 22 6 5 24 24 C 1.38319 * 119.77800 * 0.02562 * 22 6 5 25 25 C 1.38199 * 120.11582 * 359.74293 * 24 22 6 26 26 H 0.96708 * 114.00101 * 59.99198 * 1 2 3 27 27 H 1.09002 * 109.46984 * 120.00249 * 2 1 3 28 28 H 1.48497 * 110.00028 * 298.68295 * 3 2 1 29 29 H 1.48501 * 109.99652 * 59.99990 * 3 2 1 30 30 H 1.08003 * 120.06559 * 359.94938 * 5 4 2 31 31 H 0.97006 * 119.99861 * 359.97438 * 9 7 6 32 32 H 1.09004 * 113.61032 * 203.66394 * 12 10 9 33 33 H 1.08998 * 113.61219 * 334.56699 * 12 10 9 34 34 H 1.09002 * 109.46718 * 207.50237 * 15 13 12 35 35 H 1.09000 * 109.47013 * 327.50009 * 15 13 12 36 36 H 1.07997 * 126.13068 * 0.02562 * 17 16 15 37 37 H 1.08002 * 126.03900 * 180.02562 * 18 17 16 38 38 H 1.08005 * 125.90040 * 179.97438 * 19 18 17 39 39 H 1.08990 * 113.61367 * 25.42652 * 21 10 9 40 40 H 1.09003 * 113.60980 * 156.25038 * 21 10 9 41 41 H 1.08000 * 119.94078 * 179.97438 * 24 22 6 42 42 H 1.08004 * 119.82859 * 180.25133 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.5968 -2.0301 -1.4465 6 6 2.0620 -2.6881 -2.5872 7 6 1.7071 -4.1018 -2.8253 8 8 2.1141 -4.6717 -3.8190 9 7 0.9328 -4.7604 -1.9403 10 6 0.5811 -6.1629 -2.1760 11 1 0.6307 -6.4404 -3.2290 12 6 1.3084 -7.1456 -1.2431 13 6 0.1367 -6.9610 -0.2643 14 1 0.2769 -6.1357 0.4337 15 6 -0.2964 -8.2567 0.4245 16 7 0.5011 -8.4552 1.6373 17 6 0.0180 -8.6403 2.8836 18 6 1.0736 -8.7848 3.7178 19 6 2.2418 -8.6839 2.9552 20 7 1.8997 -8.4915 1.7071 21 6 -0.7232 -6.5954 -1.4858 22 6 2.8646 -2.0013 -3.5033 23 9 3.3200 -2.6292 -4.6095 24 6 3.1917 -0.6772 -3.2727 25 6 2.7224 -0.0337 -2.1433 26 1 -0.3934 0.4418 -0.7650 27 1 1.7923 -0.5139 0.8900 28 1 1.5879 2.4586 -1.2242 29 1 1.5615 2.4678 1.2085 30 1 0.9764 -2.5545 -0.7347 31 1 0.6089 -4.3060 -1.1468 32 1 1.3852 -8.1552 -1.6468 33 1 2.2577 -6.7667 -0.8644 34 1 -1.3516 -8.1917 0.6900 35 1 -0.1432 -9.0969 -0.2527 36 1 -1.0244 -8.6690 3.1647 37 1 1.0231 -8.9490 4.7841 38 1 3.2517 -8.7564 3.3311 39 1 -1.4140 -5.7724 -1.3027 40 1 -1.2025 -7.4537 -1.9566 41 1 3.8118 -0.1444 -3.9783 42 1 2.9773 1.0014 -1.9699 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_12335834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:33:22 Heat of formation + Delta-G solvation = 32.147230 kcal Electronic energy + Delta-G solvation = -27753.804180 eV Core-core repulsion = 23618.021539 eV Total energy + Delta-G solvation = -4135.782641 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.05659 -42.08278 -41.58575 -40.44850 -39.34047 -37.60518 -35.24447 -33.76269 -32.50958 -32.20946 -30.92988 -28.58162 -26.75271 -26.67246 -25.73868 -24.29123 -23.11517 -21.90738 -21.81894 -21.55163 -20.40060 -19.30162 -18.46780 -18.39884 -18.09698 -17.39889 -17.03315 -16.92441 -16.47987 -16.21325 -16.12190 -15.94644 -15.74884 -15.58784 -15.12511 -14.87631 -14.75528 -14.54761 -14.44048 -14.34435 -13.72801 -13.59806 -13.59131 -13.42424 -13.24380 -12.91526 -12.81220 -12.32179 -12.23012 -11.77169 -11.70695 -11.57878 -11.30418 -11.25552 -10.67321 -10.46451 -10.32627 -10.15751 -9.87039 -9.47368 -4.89447 -0.54854 -0.07428 1.02783 1.28822 1.54034 1.61889 1.68710 1.85642 1.97190 2.00106 2.42042 3.00348 3.28047 3.31393 3.40801 3.42925 3.48492 3.58239 3.65315 3.75309 3.96075 4.00954 4.05962 4.09869 4.21117 4.35178 4.41696 4.46105 4.57513 4.61904 4.71073 4.74228 4.75530 4.79060 4.83012 4.91091 4.92663 4.98363 5.01675 5.08253 5.09724 5.17630 5.47014 5.55766 5.77085 6.20733 6.27343 6.48017 6.81209 6.97188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.077 4.077 3 Si 0.762 3.238 4 C -0.131 4.131 5 C -0.026 4.026 6 C -0.190 4.190 7 C 0.555 3.445 8 O -0.570 6.570 9 N -0.692 5.692 10 C 0.108 3.892 11 H 0.086 0.914 12 C -0.135 4.135 13 C -0.108 4.108 14 H 0.090 0.910 15 C 0.135 3.865 16 N -0.376 5.376 17 C 0.053 3.947 18 C -0.293 4.293 19 C 0.025 3.975 20 N -0.331 5.331 21 C -0.115 4.115 22 C 0.134 3.866 23 F -0.137 7.137 24 C -0.151 4.151 25 C -0.050 4.050 26 H 0.388 0.612 27 H 0.134 0.866 28 H -0.275 1.275 29 H -0.304 1.304 30 H 0.154 0.846 31 H 0.413 0.587 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.131 0.869 35 H 0.088 0.912 36 H 0.206 0.794 37 H 0.159 0.841 38 H 0.192 0.808 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.169 0.831 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 3.496 5.238 7.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.186 4.186 3 Si 0.667 3.333 4 C -0.132 4.132 5 C -0.044 4.044 6 C -0.194 4.194 7 C 0.343 3.657 8 O -0.450 6.450 9 N -0.344 5.344 10 C 0.002 3.998 11 H 0.104 0.896 12 C -0.174 4.174 13 C -0.127 4.127 14 H 0.108 0.892 15 C 0.015 3.985 16 N -0.158 5.158 17 C -0.094 4.094 18 C -0.322 4.322 19 C -0.160 4.160 20 N -0.154 5.154 21 C -0.153 4.153 22 C 0.113 3.887 23 F -0.115 7.115 24 C -0.169 4.169 25 C -0.067 4.067 26 H 0.238 0.762 27 H 0.152 0.848 28 H -0.202 1.202 29 H -0.233 1.233 30 H 0.172 0.828 31 H 0.251 0.749 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.149 0.851 35 H 0.106 0.894 36 H 0.223 0.777 37 H 0.177 0.823 38 H 0.209 0.791 39 H 0.113 0.887 40 H 0.138 0.862 41 H 0.186 0.814 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.516 3.743 3.707 6.334 hybrid contribution -1.006 -0.477 0.327 1.160 sum -4.522 3.266 4.034 6.884 Atomic orbital electron populations 1.86592 1.17998 1.80280 1.50375 1.25195 0.83743 1.11638 0.97988 0.94106 0.90326 0.71954 0.76926 1.20414 1.00112 0.94401 0.98224 1.21153 0.95462 0.94112 0.93694 1.20042 1.05772 0.94406 0.99132 1.18360 0.78251 0.86368 0.82672 1.90836 1.54658 1.69701 1.29848 1.45435 1.51331 1.12277 1.25364 1.21971 0.97608 0.80200 1.00004 0.89561 1.23373 0.97759 0.99743 0.96550 1.22760 0.96839 0.97266 0.95852 0.89213 1.22053 0.94986 0.98076 0.83410 1.48983 1.04159 1.54978 1.07717 1.23193 1.01727 1.00048 0.84406 1.21854 0.91399 1.16935 1.02013 1.24310 1.01284 0.99636 0.90749 1.77343 0.91356 1.25337 1.21329 1.23292 0.94845 1.03266 0.93946 1.18221 0.95187 0.91933 0.83332 1.91559 1.86580 1.82794 1.50551 1.21401 1.03149 0.91657 1.00708 1.21398 0.93334 1.00813 0.91197 0.76193 0.84787 1.20162 1.23267 0.82801 0.74905 0.89068 0.93307 0.85086 0.89365 0.77687 0.82291 0.79072 0.88740 0.86239 0.81356 0.81383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 2.09 12.76 -148.98 -1.90 0.19 16 2 C -0.08 0.51 2.82 71.24 0.20 0.71 16 3 Si 0.76 -5.38 29.78 68.60 2.04 -3.34 16 4 C -0.13 0.67 5.39 -19.90 -0.11 0.57 16 5 C -0.03 0.06 9.09 22.52 0.20 0.27 16 6 C -0.19 -0.83 5.88 -20.05 -0.12 -0.95 16 7 C 0.56 4.92 7.77 86.74 0.67 5.59 16 8 O -0.57 -10.48 14.94 -3.92 -0.06 -10.54 16 9 N -0.69 -1.01 5.21 -443.04 -2.31 -3.32 16 10 C 0.11 0.10 4.32 45.52 0.20 0.29 16 11 H 0.09 0.48 7.46 -2.38 -0.02 0.47 16 12 C -0.14 -0.23 7.43 31.12 0.23 0.00 16 13 C -0.11 0.45 3.71 -10.26 -0.04 0.42 16 14 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 15 C 0.13 -0.68 6.35 86.38 0.55 -0.13 16 16 N -0.38 -0.57 3.68 -348.06 -1.28 -1.85 16 17 C 0.05 -0.06 11.45 83.54 0.96 0.89 16 18 C -0.29 -0.42 10.80 21.99 0.24 -0.18 16 19 C 0.03 0.12 12.03 85.23 1.02 1.15 16 20 N -0.33 -2.53 12.42 -57.02 -0.71 -3.24 16 21 C -0.12 0.80 7.39 31.12 0.23 1.03 16 22 C 0.13 0.79 7.29 22.67 0.17 0.96 16 23 F -0.14 -1.78 15.55 44.97 0.70 -1.09 16 24 C -0.15 0.28 10.01 22.28 0.22 0.50 16 25 C -0.05 0.30 8.66 22.31 0.19 0.49 16 26 H 0.39 -3.51 8.70 -74.05 -0.64 -4.16 16 27 H 0.13 -1.15 7.96 -2.39 -0.02 -1.17 16 28 H -0.28 1.04 7.10 99.48 0.71 1.75 16 29 H -0.30 -0.55 7.11 99.48 0.71 0.16 16 30 H 0.15 -1.01 6.41 -2.91 -0.02 -1.03 16 31 H 0.41 -1.81 6.73 -92.70 -0.62 -2.43 16 32 H 0.09 0.17 7.90 -2.38 -0.02 0.16 16 33 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.13 -1.52 8.07 -2.39 -0.02 -1.54 16 35 H 0.09 -0.43 7.84 -2.39 -0.02 -0.45 16 36 H 0.21 -1.89 8.06 -2.91 -0.02 -1.92 16 37 H 0.16 -0.37 8.06 -2.91 -0.02 -0.39 16 38 H 0.19 0.05 8.06 -2.91 -0.02 0.03 16 39 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 40 H 0.12 -1.18 8.10 -2.39 -0.02 -1.20 16 41 H 0.17 -1.03 8.06 -2.91 -0.02 -1.06 16 42 H 0.17 -1.95 4.86 -2.91 -0.01 -1.96 16 Total: 0.00 -28.28 359.62 1.16 -27.13 By element: Atomic # 1 Polarization: -15.41 SS G_CDS: -0.15 Total: -15.57 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 4.82 Total: 11.61 kcal Atomic # 7 Polarization: -4.11 SS G_CDS: -4.30 Total: -8.41 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -1.96 Total: -10.34 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.70 Total: -1.09 kcal Atomic # 14 Polarization: -5.38 SS G_CDS: 2.04 Total: -3.34 kcal Total: -28.28 1.16 -27.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_12335834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.273 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds