Wall clock time and date at job start Sun Mar 7 2021 04:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86296 * 109.47175 * 2 1 4 4 C 1.50693 * 109.47052 * 239.99730 * 2 1 3 5 5 C 1.38233 * 120.00207 * 299.99585 * 4 2 1 6 6 C 1.38234 * 120.00037 * 179.72405 * 5 4 2 7 7 C 1.38234 * 120.00240 * 0.26327 * 6 5 4 8 8 C 1.50700 * 120.00260 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46901 * 90.00181 * 8 7 6 10 10 O 1.21283 * 120.00178 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99907 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00054 * 179.97438 * 11 9 8 13 13 H 1.08998 * 112.85137 * 23.80325 * 12 11 9 14 14 C 1.53785 * 113.61294 * 155.00036 * 12 11 9 15 15 C 1.53773 * 87.08162 * 89.11573 * 14 12 11 16 16 H 1.09003 * 113.61479 * 270.79788 * 15 14 12 17 17 C 1.53005 * 113.61700 * 139.98020 * 15 14 12 18 18 N 1.46491 * 109.47350 * 174.99894 * 17 15 14 19 19 C 1.34952 * 126.03985 * 125.00320 * 18 17 15 20 20 C 1.35310 * 107.75037 * 179.97438 * 19 18 17 21 21 C 1.39874 * 107.91853 * 359.97438 * 20 19 18 22 22 N 1.30839 * 108.20211 * 359.74632 * 21 20 19 23 23 C 1.53777 * 87.08466 * 25.43285 * 15 14 12 24 24 C 1.38238 * 119.99693 * 0.02562 * 7 6 5 25 25 C 1.38234 * 120.00063 * 359.97438 * 24 7 6 26 26 H 0.96695 * 113.99708 * 60.00125 * 1 2 3 27 27 H 1.09001 * 109.47057 * 119.99805 * 2 1 3 28 28 H 1.48495 * 110.00434 * 59.99632 * 3 2 1 29 29 H 1.48500 * 110.00121 * 181.31858 * 3 2 1 30 30 H 1.08002 * 120.00157 * 0.02562 * 5 4 2 31 31 H 1.07999 * 120.00009 * 180.28389 * 6 5 4 32 32 H 1.08999 * 109.47240 * 210.00239 * 8 7 6 33 33 H 1.08999 * 109.46861 * 329.99859 * 8 7 6 34 34 H 0.97003 * 120.00087 * 359.97438 * 11 9 8 35 35 H 1.09006 * 113.61041 * 203.66451 * 14 12 11 36 36 H 1.09001 * 113.61413 * 334.48347 * 14 12 11 37 37 H 1.09002 * 109.46793 * 295.00143 * 17 15 14 38 38 H 1.09005 * 109.46654 * 54.99408 * 17 15 14 39 39 H 1.08009 * 126.11962 * 359.97438 * 19 18 17 40 40 H 1.07994 * 126.04074 * 179.97438 * 20 19 18 41 41 H 1.07999 * 125.89666 * 179.97438 * 21 20 19 42 42 H 1.09004 * 113.61544 * 220.02048 * 23 15 14 43 43 H 1.08997 * 113.61976 * 89.11618 * 23 15 14 44 44 H 1.08002 * 119.99673 * 179.97438 * 24 7 6 45 45 H 1.08000 * 120.00005 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.5975 -2.0339 -1.4491 6 6 2.0535 -2.6839 -2.5806 7 6 2.8480 -2.0121 -3.4908 8 6 3.3456 -2.7209 -4.7240 9 6 2.3509 -2.5421 -5.8419 10 8 1.3374 -1.9026 -5.6554 11 7 2.5871 -3.0939 -7.0487 12 6 1.6198 -2.9206 -8.1353 13 1 0.9958 -2.0359 -8.0094 14 6 2.2399 -3.0428 -9.5373 15 6 1.9502 -4.5503 -9.4482 16 1 2.7608 -5.1250 -9.0000 17 6 1.4469 -5.1564 -10.7598 18 7 1.3147 -6.6074 -10.6083 19 6 0.2008 -7.3320 -10.8433 20 6 0.4906 -8.6288 -10.5876 21 6 1.8277 -8.6992 -10.1831 22 7 2.3243 -7.4889 -10.2007 23 6 0.8250 -4.1961 -8.4617 24 6 3.1868 -0.6903 -3.2691 25 6 2.7307 -0.0403 -2.1375 26 1 -0.3932 0.4417 -0.7650 27 1 1.7923 -0.5138 0.8900 28 1 1.5615 2.4679 1.2084 29 1 3.5346 1.7703 -0.0321 30 1 0.9763 -2.5587 -0.7383 31 1 1.7889 -3.7166 -2.7537 32 1 4.3063 -2.3007 -5.0219 33 1 3.4645 -3.7829 -4.5096 34 1 3.3975 -3.6057 -7.1978 35 1 1.6684 -2.5334 -10.3133 36 1 3.3025 -2.8020 -9.5672 37 1 0.4766 -4.7272 -11.0096 38 1 2.1571 -4.9374 -11.5572 39 1 -0.7516 -6.9459 -11.1759 40 1 -0.1902 -9.4621 -10.6796 41 1 2.3594 -9.5980 -9.9076 42 1 0.7458 -4.8878 -7.6230 43 1 -0.1332 -4.0021 -8.9435 44 1 3.8078 -0.1655 -3.9800 45 1 2.9957 0.9922 -1.9641 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_12335836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:33:27 Heat of formation + Delta-G solvation = 67.625410 kcal Electronic energy + Delta-G solvation = -26488.787632 eV Core-core repulsion = 22668.459797 eV Total energy + Delta-G solvation = -3820.327835 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.06668 -41.39159 -40.53446 -39.34582 -37.63688 -35.02172 -34.10911 -33.30231 -31.95784 -30.99094 -29.87126 -28.38053 -26.72615 -25.88026 -24.16726 -23.83342 -22.49501 -21.96730 -21.60521 -21.37500 -20.12323 -18.50494 -18.35672 -17.95278 -17.35778 -16.90650 -16.71562 -16.35164 -16.26692 -16.00193 -15.77577 -15.51053 -15.39074 -14.87154 -14.73107 -14.62444 -14.46065 -14.25154 -14.07392 -13.86837 -13.57047 -13.46394 -13.31233 -13.09870 -12.84097 -12.69176 -12.28106 -12.20861 -11.98891 -11.71759 -11.63328 -11.56165 -11.31995 -11.02242 -10.46636 -10.31410 -10.07756 -9.90082 -9.62878 -9.46263 -5.01722 0.21658 0.43098 1.01284 1.29361 1.59287 1.59789 1.68227 1.91595 1.96025 2.12308 2.76719 3.42161 3.47689 3.52571 3.53621 3.60481 3.77311 3.80244 3.89584 3.97551 4.01134 4.03415 4.09326 4.22827 4.32952 4.41609 4.43877 4.46373 4.53001 4.58137 4.68212 4.69364 4.71565 4.75341 4.84156 4.91917 4.97766 5.00504 5.06397 5.07099 5.16511 5.20918 5.35580 5.51265 5.56765 5.59756 5.76515 5.99407 6.19366 6.51164 6.70375 6.78991 7.23387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.078 4.078 3 Si 0.776 3.224 4 C -0.127 4.127 5 C -0.108 4.108 6 C -0.117 4.117 7 C -0.071 4.071 8 C -0.099 4.099 9 C 0.516 3.484 10 O -0.574 6.574 11 N -0.706 5.706 12 C 0.115 3.885 13 H 0.088 0.912 14 C -0.120 4.120 15 C -0.113 4.113 16 H 0.088 0.912 17 C 0.135 3.865 18 N -0.374 5.374 19 C 0.051 3.949 20 C -0.294 4.294 21 C 0.028 3.972 22 N -0.334 5.334 23 C -0.144 4.144 24 C -0.109 4.109 25 C -0.123 4.123 26 H 0.394 0.606 27 H 0.105 0.895 28 H -0.298 1.298 29 H -0.281 1.281 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.123 0.877 34 H 0.414 0.586 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.203 0.797 40 H 0.158 0.842 41 H 0.196 0.804 42 H 0.047 0.953 43 H 0.102 0.898 44 H 0.143 0.857 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.545 0.504 -6.436 6.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.187 4.187 3 Si 0.682 3.318 4 C -0.127 4.127 5 C -0.126 4.126 6 C -0.135 4.135 7 C -0.072 4.072 8 C -0.139 4.139 9 C 0.304 3.696 10 O -0.453 6.453 11 N -0.357 5.357 12 C 0.009 3.991 13 H 0.106 0.894 14 C -0.158 4.158 15 C -0.132 4.132 16 H 0.106 0.894 17 C 0.015 3.985 18 N -0.156 5.156 19 C -0.095 4.095 20 C -0.324 4.324 21 C -0.157 4.157 22 N -0.156 5.156 23 C -0.183 4.183 24 C -0.127 4.127 25 C -0.140 4.140 26 H 0.243 0.757 27 H 0.123 0.877 28 H -0.226 1.226 29 H -0.208 1.208 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.141 0.859 34 H 0.251 0.749 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.142 0.858 38 H 0.110 0.890 39 H 0.220 0.780 40 H 0.176 0.824 41 H 0.212 0.788 42 H 0.066 0.934 43 H 0.120 0.880 44 H 0.161 0.839 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.439 2.115 -5.165 6.091 hybrid contribution -0.469 -1.771 0.258 1.850 sum 1.970 0.344 -4.907 5.299 Atomic orbital electron populations 1.86446 1.17493 1.82239 1.50370 1.25242 0.85145 1.11203 0.97144 0.93578 0.77986 0.75528 0.84731 1.20416 0.99570 0.95271 0.97484 1.21069 0.99366 0.94406 0.97792 1.21216 0.97420 1.00582 0.94327 1.19556 0.97769 0.94595 0.95275 1.20754 0.99124 1.04108 0.89875 1.20961 0.86984 0.77795 0.83853 1.90735 1.29889 1.41911 1.82733 1.45646 1.24707 1.54872 1.10524 1.21808 0.91674 0.98412 0.87231 0.89392 1.23295 1.03062 0.93829 0.95630 1.22799 0.98865 0.96613 0.94925 0.89360 1.22071 1.04847 0.73137 0.98488 1.48963 1.07641 1.07812 1.51180 1.23153 0.93555 0.92407 1.00427 1.21855 0.97754 0.97824 1.14945 1.24304 0.95454 0.96262 0.99647 1.77234 1.14199 1.00877 1.23294 1.23509 0.98573 0.97218 0.98999 1.21238 1.00053 0.93997 0.97367 1.21179 0.98162 1.00081 0.94606 0.75668 0.87736 1.22588 1.20789 0.86023 0.85421 0.84895 0.85894 0.74898 0.86451 0.89417 0.85849 0.88995 0.78038 0.82393 0.78767 0.93362 0.88011 0.83886 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.29 12.77 -148.98 -1.90 -4.19 16 2 C -0.08 -0.22 2.82 71.23 0.20 -0.02 16 3 Si 0.78 0.12 29.79 68.60 2.04 2.16 16 4 C -0.13 -0.51 5.39 -19.87 -0.11 -0.61 16 5 C -0.11 -0.59 9.61 22.27 0.21 -0.38 16 6 C -0.12 -0.49 9.70 22.27 0.22 -0.28 16 7 C -0.07 -0.15 4.37 -19.86 -0.09 -0.24 16 8 C -0.10 0.38 5.83 29.10 0.17 0.55 16 9 C 0.52 0.83 7.82 87.66 0.69 1.51 16 10 O -0.57 -6.41 15.63 -3.04 -0.05 -6.46 16 11 N -0.71 2.39 5.26 -440.03 -2.32 0.08 16 12 C 0.11 -0.34 4.32 45.52 0.20 -0.15 16 13 H 0.09 0.11 7.46 -2.39 -0.02 0.09 16 14 C -0.12 1.00 7.39 31.12 0.23 1.23 16 15 C -0.11 0.60 3.75 -10.27 -0.04 0.57 16 16 H 0.09 -0.14 7.97 -2.39 -0.02 -0.16 16 17 C 0.13 -0.75 6.34 86.38 0.55 -0.20 16 18 N -0.37 -0.43 3.68 -348.06 -1.28 -1.70 16 19 C 0.05 -0.04 11.45 83.54 0.96 0.92 16 20 C -0.29 -0.45 10.80 21.99 0.24 -0.21 16 21 C 0.03 0.11 12.03 85.24 1.03 1.14 16 22 N -0.33 -2.13 12.28 -57.02 -0.70 -2.83 16 23 C -0.14 0.43 7.43 31.12 0.23 0.67 16 24 C -0.11 -0.17 9.70 22.27 0.22 0.05 16 25 C -0.12 -0.24 8.67 22.27 0.19 -0.05 16 26 H 0.39 -1.25 8.70 -74.06 -0.64 -1.90 16 27 H 0.11 0.40 7.96 -2.39 -0.02 0.38 16 28 H -0.30 -2.15 7.11 99.48 0.71 -1.45 16 29 H -0.28 -1.10 7.11 99.48 0.71 -0.39 16 30 H 0.12 0.63 8.06 -2.91 -0.02 0.60 16 31 H 0.13 0.22 8.06 -2.91 -0.02 0.20 16 32 H 0.13 -1.24 8.09 -2.39 -0.02 -1.26 16 33 H 0.12 -0.92 8.09 -2.39 -0.02 -0.94 16 34 H 0.41 -3.47 8.70 -92.71 -0.81 -4.28 16 35 H 0.12 -1.34 8.10 -2.38 -0.02 -1.36 16 36 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 37 H 0.12 -1.34 7.77 -2.39 -0.02 -1.36 16 38 H 0.09 -0.59 8.14 -2.38 -0.02 -0.61 16 39 H 0.20 -1.65 8.06 -2.91 -0.02 -1.67 16 40 H 0.16 -0.32 8.06 -2.91 -0.02 -0.34 16 41 H 0.20 -0.20 8.06 -2.91 -0.02 -0.22 16 42 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.10 -0.52 7.90 -2.39 -0.02 -0.54 16 44 H 0.14 -0.43 8.06 -2.91 -0.02 -0.45 16 45 H 0.14 -0.32 4.88 -2.91 -0.01 -0.34 16 Total: 0.00 -25.70 379.45 0.49 -25.21 By element: Atomic # 1 Polarization: -16.35 SS G_CDS: -0.40 Total: -16.76 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 5.09 Total: 4.49 kcal Atomic # 7 Polarization: -0.16 SS G_CDS: -4.30 Total: -4.46 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -1.95 Total: -10.65 kcal Atomic # 14 Polarization: 0.12 SS G_CDS: 2.04 Total: 2.16 kcal Total: -25.70 0.49 -25.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_12335836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.835 kcal (2) G-P(sol) polarization free energy of solvation -25.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds