Wall clock time and date at job start Sun Mar 7 2021 04:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86304 * 109.46528 * 2 1 4 4 C 1.50700 * 109.47110 * 119.99856 * 2 1 3 5 5 C 1.34451 * 126.48104 * 254.97247 * 4 2 1 6 6 N 1.36563 * 109.98426 * 180.02562 * 5 4 2 7 7 C 1.37831 * 109.86026 * 0.02562 * 6 5 4 8 8 C 1.38643 * 133.38160 * 179.97438 * 7 6 5 9 9 C 1.39320 * 119.66991 * 180.02562 * 8 7 6 10 10 C 1.47572 * 119.83257 * 179.97438 * 9 8 7 11 11 O 1.21591 * 120.00557 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99679 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99665 * 179.97438 * 12 10 9 14 14 H 1.08999 * 112.85136 * 336.19533 * 13 12 10 15 15 C 1.53779 * 113.61484 * 107.49929 * 13 12 10 16 16 C 1.53785 * 87.08093 * 89.11287 * 15 13 12 17 17 H 1.09002 * 113.61570 * 270.88522 * 16 15 13 18 18 C 1.52995 * 113.69093 * 139.99088 * 16 15 13 19 19 N 1.46500 * 109.47108 * 85.93603 * 18 16 15 20 20 C 1.34957 * 126.03656 * 124.71979 * 19 18 16 21 21 C 1.35318 * 107.74253 * 179.83870 * 20 19 18 22 22 C 1.39864 * 107.92189 * 0.42193 * 21 20 19 23 23 N 1.30845 * 108.20544 * 359.73636 * 22 21 20 24 24 C 1.53781 * 87.08241 * 25.43228 * 16 15 13 25 25 C 1.40199 * 120.33084 * 0.25766 * 9 8 7 26 26 C 1.36234 * 120.38146 * 359.45639 * 25 9 8 27 27 C 1.39878 * 119.95850 * 0.56288 * 26 25 9 28 28 H 0.96694 * 113.99976 * 60.00119 * 1 2 3 29 29 H 1.08995 * 109.47033 * 240.00406 * 2 1 3 30 30 H 1.48492 * 110.00233 * 60.00185 * 3 2 1 31 31 H 1.48506 * 109.99278 * 181.32123 * 3 2 1 32 32 H 1.07998 * 125.01146 * 0.06741 * 5 4 2 33 33 H 0.96999 * 125.07491 * 180.02562 * 6 5 4 34 34 H 1.08007 * 120.16522 * 0.02744 * 8 7 6 35 35 H 0.96996 * 120.00382 * 359.97438 * 12 10 9 36 36 H 1.09003 * 113.61775 * 334.57164 * 15 13 12 37 37 H 1.08996 * 113.61960 * 203.65890 * 15 13 12 38 38 H 1.09005 * 109.47501 * 205.93599 * 18 16 15 39 39 H 1.09004 * 109.47494 * 325.93611 * 18 16 15 40 40 H 1.07997 * 126.12591 * 359.97438 * 20 19 18 41 41 H 1.07997 * 126.03611 * 180.15339 * 21 20 19 42 42 H 1.07996 * 125.89869 * 179.75774 * 22 21 20 43 43 H 1.09005 * 113.61302 * 89.11252 * 24 16 15 44 44 H 1.08996 * 113.61527 * 219.93415 * 24 16 15 45 45 H 1.07999 * 119.80666 * 179.72439 * 25 9 8 46 46 H 1.07999 * 120.01907 * 180.23538 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.4621 -0.1363 2.3243 6 7 2.8043 -1.0946 3.2350 7 6 2.4958 -2.3431 2.7392 8 6 2.6330 -3.6279 3.2418 9 6 2.2157 -4.7156 2.4777 10 6 2.3606 -6.0848 3.0090 11 8 2.8435 -6.2615 4.1108 12 7 1.9585 -7.1394 2.2724 13 6 2.1028 -8.4987 2.7997 14 1 2.8825 -8.5783 3.5571 15 6 0.7698 -9.1431 3.2151 16 6 0.6587 -9.6580 1.7702 17 1 0.1566 -8.9636 1.0966 18 6 0.1156 -11.0845 1.6660 19 7 -1.3489 -11.0496 1.6527 20 6 -2.1473 -11.5890 0.7078 21 6 -3.4300 -11.3443 1.0629 22 6 -3.4146 -10.6227 2.2609 23 7 -2.1677 -10.4455 2.6155 24 6 2.1931 -9.5768 1.7068 25 6 1.6643 -4.5163 1.2042 26 6 1.5206 -3.2569 0.7051 27 6 1.9352 -2.1548 1.4600 28 1 -0.3933 0.4417 -0.7650 29 1 1.7924 -0.5137 -0.8900 30 1 1.5614 2.4679 1.2084 31 1 3.5345 1.7704 -0.0322 32 1 2.5972 0.9262 2.4627 33 1 3.2048 -0.9225 4.1015 34 1 3.0612 -3.7848 4.2209 35 1 1.5735 -6.9986 1.3933 36 1 -0.0009 -8.4195 3.4811 37 1 0.8799 -9.9366 3.9541 38 1 0.4765 -11.5444 0.7460 39 1 0.4574 -11.6669 2.5217 40 1 -1.8211 -12.1223 -0.1728 41 1 -4.3098 -11.6484 0.5155 42 1 -4.2822 -10.2725 2.8004 43 1 2.6924 -10.4890 2.0336 44 1 2.5716 -9.2049 0.7547 45 1 1.3477 -5.3659 0.6174 46 1 1.0916 -3.1099 -0.2751 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_12335838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:33:30 Heat of formation + Delta-G solvation = 108.187076 kcal Electronic energy + Delta-G solvation = -29652.021853 eV Core-core repulsion = 25511.574712 eV Total energy + Delta-G solvation = -4140.447141 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.60596 -42.04819 -41.33035 -39.65117 -37.86333 -37.49834 -35.14725 -33.53833 -33.43931 -31.01867 -30.88654 -30.66146 -28.50205 -26.71676 -26.50206 -25.29454 -23.87913 -23.76230 -21.89904 -21.78423 -21.56995 -20.70295 -20.34323 -19.41196 -18.46071 -18.25584 -18.06371 -17.42931 -17.20643 -16.47440 -16.30698 -16.01251 -15.70912 -15.56742 -15.46757 -15.13305 -15.06463 -14.86533 -14.83903 -14.76822 -14.67124 -14.34031 -13.85725 -13.68263 -13.57129 -13.39989 -13.29079 -12.88195 -12.72464 -12.60443 -12.21043 -12.17281 -11.94378 -11.67813 -11.56668 -11.24239 -11.21215 -10.91115 -10.32236 -10.19587 -10.16252 -9.50566 -9.46311 -8.94413 -4.92061 -0.45672 0.26400 1.03808 1.19616 1.36745 1.69325 1.70239 1.76020 1.80857 1.97752 2.00750 2.11207 2.75609 3.34517 3.44031 3.46419 3.53822 3.62593 3.67455 3.69503 3.79254 3.98685 4.02976 4.03704 4.11146 4.17546 4.23806 4.26586 4.36595 4.38434 4.44874 4.49674 4.65212 4.70893 4.74294 4.80081 4.83323 4.87745 4.93874 5.01283 5.04963 5.09915 5.13455 5.18275 5.29508 5.35939 5.47908 5.52981 5.77564 5.84683 6.22342 6.33084 6.37777 6.82021 7.02129 7.05130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.568 6.568 2 C -0.045 4.045 3 Si 0.782 3.218 4 C -0.187 4.187 5 C 0.067 3.933 6 N -0.579 5.579 7 C 0.067 3.933 8 C -0.069 4.069 9 C -0.132 4.132 10 C 0.564 3.436 11 O -0.581 6.581 12 N -0.693 5.693 13 C 0.108 3.892 14 H 0.087 0.913 15 C -0.136 4.136 16 C -0.109 4.109 17 H 0.090 0.910 18 C 0.135 3.865 19 N -0.375 5.375 20 C 0.053 3.947 21 C -0.293 4.293 22 C 0.024 3.976 23 N -0.331 5.331 24 C -0.114 4.114 25 C -0.106 4.106 26 C -0.075 4.075 27 C -0.082 4.082 28 H 0.400 0.600 29 H 0.085 0.915 30 H -0.290 1.290 31 H -0.291 1.291 32 H 0.186 0.814 33 H 0.433 0.567 34 H 0.129 0.871 35 H 0.414 0.586 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.132 0.868 39 H 0.088 0.912 40 H 0.207 0.793 41 H 0.159 0.841 42 H 0.191 0.809 43 H 0.119 0.881 44 H 0.096 0.904 45 H 0.156 0.844 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.324 0.430 -9.921 9.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.378 6.378 2 C -0.155 4.155 3 Si 0.687 3.313 4 C -0.195 4.195 5 C -0.062 4.062 6 N -0.182 5.182 7 C -0.040 4.040 8 C -0.090 4.090 9 C -0.136 4.136 10 C 0.353 3.647 11 O -0.462 6.462 12 N -0.344 5.344 13 C 0.003 3.997 14 H 0.105 0.895 15 C -0.175 4.175 16 C -0.128 4.128 17 H 0.108 0.892 18 C 0.015 3.985 19 N -0.158 5.158 20 C -0.093 4.093 21 C -0.322 4.322 22 C -0.161 4.161 23 N -0.154 5.154 24 C -0.153 4.153 25 C -0.126 4.126 26 C -0.093 4.093 27 C -0.088 4.088 28 H 0.251 0.749 29 H 0.103 0.897 30 H -0.217 1.217 31 H -0.218 1.218 32 H 0.203 0.797 33 H 0.273 0.727 34 H 0.147 0.853 35 H 0.252 0.748 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.150 0.850 39 H 0.106 0.894 40 H 0.224 0.776 41 H 0.177 0.823 42 H 0.208 0.792 43 H 0.137 0.863 44 H 0.115 0.885 45 H 0.173 0.827 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.237 1.081 -7.191 7.608 hybrid contribution -0.657 -0.532 0.339 0.911 sum 1.580 0.549 -6.853 7.054 Atomic orbital electron populations 1.86487 1.17778 1.82389 1.51103 1.24199 0.85301 1.10481 0.95537 0.94007 0.77226 0.74564 0.85540 1.20102 1.09969 0.91462 0.97935 1.22012 1.00124 0.94871 0.89216 1.41727 1.54507 1.03447 1.18556 1.18187 1.03853 0.86630 0.95304 1.20119 1.00143 0.88584 1.00193 1.19488 1.05759 0.91649 0.96723 1.18347 0.76822 0.85385 0.84181 1.90764 1.46715 1.86732 1.22007 1.45442 1.62966 1.05023 1.21004 1.21966 0.98389 0.81017 0.98369 0.89492 1.23365 0.96613 1.00148 0.97387 1.22770 0.96824 0.95981 0.97264 0.89169 1.22064 0.72909 0.97779 1.05780 1.48997 1.07236 1.42232 1.17324 1.23199 0.91010 0.99129 0.95957 1.21848 0.98247 1.11268 1.00858 1.24299 0.95477 0.99080 0.97291 1.77348 1.02696 1.20817 1.14510 1.23285 0.94037 0.98763 0.99184 1.20930 0.99498 0.98209 0.93927 1.20455 0.98340 0.90133 1.00394 1.19559 1.01287 0.93906 0.93999 0.74903 0.89666 1.21732 1.21794 0.79681 0.72690 0.85329 0.74790 0.93514 0.89181 0.84985 0.89379 0.77582 0.82298 0.79222 0.86297 0.88541 0.82657 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -0.01 12.86 -148.98 -1.92 -1.92 16 2 C -0.05 0.03 3.05 71.24 0.22 0.25 16 3 Si 0.78 -3.09 30.79 68.60 2.11 -0.97 16 4 C -0.19 -1.00 5.61 -18.65 -0.10 -1.10 16 5 C 0.07 0.23 10.43 83.09 0.87 1.10 16 6 N -0.58 -1.96 6.07 -187.72 -1.14 -3.09 16 7 C 0.07 0.52 7.26 38.96 0.28 0.80 16 8 C -0.07 -0.61 9.61 22.63 0.22 -0.40 16 9 C -0.13 -0.96 5.87 -20.08 -0.12 -1.08 16 10 C 0.56 5.26 7.76 86.71 0.67 5.93 16 11 O -0.58 -10.19 15.91 -4.00 -0.06 -10.25 16 12 N -0.69 -1.36 5.21 -443.14 -2.31 -3.67 16 13 C 0.11 0.11 4.32 45.52 0.20 0.31 16 14 H 0.09 0.47 7.46 -2.39 -0.02 0.45 16 15 C -0.14 -0.29 7.43 31.12 0.23 -0.06 16 16 C -0.11 0.44 3.70 -10.27 -0.04 0.40 16 17 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 18 C 0.13 -0.67 6.34 86.38 0.55 -0.12 16 19 N -0.38 -0.69 3.68 -348.05 -1.28 -1.97 16 20 C 0.05 -0.05 11.45 83.54 0.96 0.91 16 21 C -0.29 -0.56 10.80 21.99 0.24 -0.32 16 22 C 0.02 0.13 12.03 85.23 1.02 1.15 16 23 N -0.33 -2.73 12.42 -57.03 -0.71 -3.44 16 24 C -0.11 0.80 7.39 31.12 0.23 1.03 16 25 C -0.11 -0.22 9.46 22.28 0.21 -0.01 16 26 C -0.07 -0.26 10.03 22.20 0.22 -0.04 16 27 C -0.08 -0.61 6.35 -20.14 -0.13 -0.73 16 28 H 0.40 -4.33 8.74 -74.06 -0.65 -4.97 16 29 H 0.09 -0.35 7.96 -2.39 -0.02 -0.37 16 30 H -0.29 -0.58 7.04 99.48 0.70 0.12 16 31 H -0.29 -0.51 7.11 99.48 0.71 0.19 16 32 H 0.19 -0.17 6.30 -2.91 -0.02 -0.19 16 33 H 0.43 -1.04 8.96 -92.71 -0.83 -1.87 16 34 H 0.13 1.21 7.62 -2.91 -0.02 1.19 16 35 H 0.41 -1.59 6.69 -92.71 -0.62 -2.21 16 36 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.09 0.21 7.92 -2.39 -0.02 0.20 16 38 H 0.13 -1.55 8.07 -2.38 -0.02 -1.57 16 39 H 0.09 -0.42 7.88 -2.39 -0.02 -0.44 16 40 H 0.21 -1.90 8.06 -2.91 -0.02 -1.92 16 41 H 0.16 -0.30 8.06 -2.91 -0.02 -0.32 16 42 H 0.19 0.23 8.06 -2.91 -0.02 0.21 16 43 H 0.12 -1.19 8.10 -2.38 -0.02 -1.21 16 44 H 0.10 -0.92 8.14 -2.39 -0.02 -0.94 16 45 H 0.16 -0.80 6.36 -2.91 -0.02 -0.81 16 46 H 0.15 -0.15 8.06 -2.91 -0.02 -0.18 16 Total: 0.00 -31.23 388.69 -0.59 -31.83 By element: Atomic # 1 Polarization: -13.52 SS G_CDS: -1.02 Total: -14.53 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 5.73 Total: 8.03 kcal Atomic # 7 Polarization: -6.74 SS G_CDS: -5.44 Total: -12.18 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -1.98 Total: -12.17 kcal Atomic # 14 Polarization: -3.09 SS G_CDS: 2.11 Total: -0.97 kcal Total: -31.23 -0.59 -31.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_12335838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.014 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds