Wall clock time and date at job start Sun Mar 7 2021 04:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46885 * 2 1 4 4 C 1.52999 * 109.47236 * 294.99788 * 3 2 1 5 5 C 1.53002 * 109.47096 * 174.99857 * 3 2 1 6 6 C 1.50699 * 109.47314 * 185.45686 * 5 3 2 7 7 O 1.21284 * 120.00095 * 26.48518 * 6 5 3 8 8 N 1.34774 * 120.00182 * 206.49196 * 6 5 3 9 9 C 1.46501 * 120.00331 * 185.39192 * 8 6 5 10 10 H 1.08999 * 112.84940 * 25.32716 * 9 8 6 11 11 C 1.53778 * 113.61574 * 156.52822 * 9 8 6 12 12 C 1.53773 * 87.08404 * 89.11398 * 11 9 8 13 13 H 1.09001 * 113.61957 * 270.88475 * 12 11 9 14 14 C 1.53001 * 113.61615 * 140.06213 * 12 11 9 15 15 N 1.46501 * 109.47002 * 175.00056 * 14 12 11 16 16 C 1.34953 * 126.03669 * 125.00774 * 15 14 12 17 17 C 1.35311 * 107.74764 * 179.97438 * 16 15 14 18 18 C 1.39880 * 107.92097 * 359.97438 * 17 16 15 19 19 N 1.30842 * 108.19970 * 359.74431 * 18 17 16 20 20 C 1.53777 * 113.61107 * 254.13574 * 9 8 6 21 21 N 1.46505 * 109.46938 * 305.45342 * 5 3 2 22 22 C 1.36342 * 125.63577 * 300.01883 * 21 5 3 23 23 C 1.34853 * 108.21988 * 180.02562 * 22 21 5 24 24 C 1.40897 * 107.41393 * 0.02562 * 23 22 21 25 25 C 1.34850 * 107.41520 * 359.73578 * 24 23 22 26 26 C 1.50706 * 125.88743 * 180.25364 * 25 24 23 27 27 O 1.42894 * 109.46850 * 210.19924 * 26 25 24 28 28 Si 1.86298 * 109.47247 * 330.19862 * 26 25 24 29 29 H 1.09000 * 109.46719 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47214 * 299.99671 * 1 2 3 31 31 H 1.08998 * 109.47021 * 60.00402 * 1 2 3 32 32 H 1.08993 * 109.47892 * 240.00006 * 2 1 3 33 33 H 1.08998 * 109.47021 * 119.99598 * 2 1 3 34 34 H 1.09002 * 109.46803 * 55.00255 * 3 2 1 35 35 H 1.09001 * 109.47036 * 175.52511 * 4 3 2 36 36 H 1.08994 * 109.46816 * 295.52424 * 4 3 2 37 37 H 1.08994 * 109.46772 * 55.52466 * 4 3 2 38 38 H 1.09001 * 109.47385 * 65.45124 * 5 3 2 39 39 H 0.97008 * 119.99883 * 5.38628 * 8 6 5 40 40 H 1.08998 * 113.61201 * 203.66580 * 11 9 8 41 41 H 1.09000 * 113.61392 * 334.48125 * 11 9 8 42 42 H 1.08993 * 109.47239 * 295.00141 * 14 12 11 43 43 H 1.08997 * 109.46885 * 55.00231 * 14 12 11 44 44 H 1.08000 * 126.12256 * 359.97438 * 16 15 14 45 45 H 1.07995 * 126.04208 * 180.02562 * 17 16 15 46 46 H 1.08000 * 125.89850 * 179.97438 * 18 17 16 47 47 H 1.08999 * 113.61854 * 25.42560 * 20 9 8 48 48 H 1.09001 * 113.61948 * 156.33453 * 20 9 8 49 49 H 1.07999 * 125.89454 * 0.03410 * 22 21 5 50 50 H 1.07999 * 126.29617 * 180.02562 * 23 22 21 51 51 H 1.08004 * 126.29039 * 179.97438 * 24 23 22 52 52 H 1.09002 * 109.47147 * 90.19595 * 26 25 24 53 53 H 0.96700 * 114.00468 * 59.99841 * 27 26 25 54 54 H 1.48495 * 110.00030 * 180.02562 * 28 26 25 55 55 H 1.48497 * 109.99932 * 301.31979 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6352 2.1266 -1.3074 5 6 3.5648 1.4444 0.1258 6 6 4.0560 2.8627 0.2605 7 8 3.3299 3.7141 0.7284 8 7 5.3022 3.1852 -0.1389 9 6 5.8220 4.5339 0.0997 10 1 5.3435 5.0286 0.9449 11 6 7.3577 4.6053 0.1328 12 6 7.3013 4.8380 -1.3862 13 1 7.3191 3.9177 -1.9699 14 6 8.3074 5.8773 -1.8848 15 7 8.2595 5.9407 -3.3477 16 6 8.0478 7.0491 -4.0878 17 6 8.0787 6.6869 -5.3912 18 6 8.3180 5.3099 -5.4497 19 7 8.4324 4.8627 -4.2254 20 6 5.8848 5.4028 -1.1676 21 7 3.9580 0.6769 1.3101 22 6 3.5930 0.9547 2.5940 23 6 4.1495 0.0281 3.4004 24 6 4.8855 -0.8537 2.5844 25 6 4.7459 -0.4358 1.3100 26 6 5.3581 -1.0847 0.0954 27 8 5.6099 -0.0907 -0.8998 28 14 6.9608 -1.9064 0.5717 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8935 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6053 1.9815 0.8419 35 1 1.9286 3.1759 -1.2744 36 1 2.1336 1.6361 -2.1434 37 1 0.5552 2.0551 -1.4355 38 1 4.0033 0.9910 -0.7632 39 1 5.8550 2.5241 -0.5843 40 1 7.7432 5.4584 0.6912 41 1 7.8325 3.6655 0.4145 42 1 8.0568 6.8537 -1.4704 43 1 9.3105 5.5940 -1.5661 44 1 7.8833 8.0466 -3.7078 45 1 7.9433 7.3447 -6.2369 46 1 8.3985 4.7189 -6.3500 47 1 5.1715 5.1060 -1.9364 48 1 5.8683 6.4736 -0.9642 49 1 2.9662 1.7752 2.9107 50 1 4.0494 -0.0278 4.4743 51 1 5.4536 -1.7096 2.9180 52 1 4.6712 -1.8316 -0.3027 53 1 6.2146 0.6077 -0.6140 54 1 7.5749 -2.5496 -0.6176 55 1 7.8945 -0.9043 1.1454 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_12360566.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:01 Heat of formation + Delta-G solvation = 95.172610 kcal Electronic energy + Delta-G solvation = -36108.034495 eV Core-core repulsion = 31729.550949 eV Total energy + Delta-G solvation = -4378.483545 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.215 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.87933 -42.09989 -41.25769 -39.77154 -38.09446 -37.56739 -35.25147 -33.84820 -33.10902 -31.13861 -31.02827 -30.84940 -28.80289 -27.59121 -26.85242 -26.11290 -25.51259 -24.18683 -22.45339 -22.08714 -21.96921 -21.68852 -20.94647 -20.54838 -20.15504 -19.06904 -18.47644 -18.12866 -17.43891 -17.33009 -16.65568 -16.56152 -16.18250 -16.17367 -15.73618 -15.61396 -15.38959 -15.28508 -15.04784 -14.73667 -14.57838 -14.47630 -14.32389 -14.19956 -14.12544 -13.91935 -13.62630 -13.54604 -13.37288 -13.27817 -13.19004 -13.05833 -12.84258 -12.68432 -12.42774 -12.32660 -12.08835 -11.94988 -11.77665 -11.76905 -11.66107 -11.62592 -11.43013 -11.33844 -10.84721 -10.39734 -10.29637 -9.60047 -9.50837 -8.99693 -4.88617 0.85353 0.97002 1.07130 1.36365 1.62549 1.68562 1.76456 1.90864 1.92132 2.06467 2.25278 2.94815 3.28429 3.34061 3.37025 3.40309 3.46696 3.59999 3.67115 3.74467 3.89844 3.94235 4.05144 4.07374 4.13441 4.20391 4.33677 4.35016 4.40786 4.43685 4.50365 4.52903 4.54955 4.58040 4.62117 4.64614 4.65488 4.68388 4.71149 4.86047 4.87116 4.89197 4.94406 4.95205 4.97776 5.02711 5.09466 5.12969 5.24615 5.29351 5.35257 5.37296 5.39719 5.72096 5.89573 6.09897 6.14870 6.21811 6.24474 6.29385 6.74705 6.84978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.082 4.082 4 C -0.146 4.146 5 C 0.112 3.888 6 C 0.514 3.486 7 O -0.553 6.553 8 N -0.698 5.698 9 C 0.113 3.887 10 H 0.091 0.909 11 C -0.121 4.121 12 C -0.114 4.114 13 H 0.086 0.914 14 C 0.136 3.864 15 N -0.374 5.374 16 C 0.052 3.948 17 C -0.294 4.294 18 C 0.029 3.971 19 N -0.335 5.335 20 C -0.140 4.140 21 N -0.421 5.421 22 C -0.020 4.020 23 C -0.199 4.199 24 C -0.189 4.189 25 C -0.021 4.021 26 C -0.059 4.059 27 O -0.541 6.541 28 Si 0.796 3.204 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.149 0.851 39 H 0.405 0.595 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.126 0.874 43 H 0.091 0.909 44 H 0.204 0.796 45 H 0.159 0.841 46 H 0.195 0.805 47 H 0.049 0.951 48 H 0.108 0.892 49 H 0.151 0.849 50 H 0.147 0.853 51 H 0.169 0.831 52 H 0.136 0.864 53 H 0.375 0.625 54 H -0.293 1.293 55 H -0.290 1.290 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.431 -0.185 0.907 2.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.102 4.102 4 C -0.204 4.204 5 C 0.006 3.994 6 C 0.299 3.701 7 O -0.429 6.429 8 N -0.349 5.349 9 C 0.007 3.993 10 H 0.109 0.891 11 C -0.159 4.159 12 C -0.133 4.133 13 H 0.104 0.896 14 C 0.016 3.984 15 N -0.157 5.157 16 C -0.094 4.094 17 C -0.323 4.323 18 C -0.156 4.156 19 N -0.158 5.158 20 C -0.179 4.179 21 N -0.099 5.099 22 C -0.149 4.149 23 C -0.224 4.224 24 C -0.214 4.214 25 C -0.132 4.132 26 C -0.167 4.167 27 O -0.348 6.348 28 Si 0.699 3.301 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.166 0.834 39 H 0.242 0.758 40 H 0.141 0.859 41 H 0.101 0.899 42 H 0.144 0.856 43 H 0.110 0.890 44 H 0.221 0.779 45 H 0.177 0.823 46 H 0.212 0.788 47 H 0.068 0.932 48 H 0.126 0.874 49 H 0.168 0.832 50 H 0.165 0.835 51 H 0.187 0.813 52 H 0.153 0.847 53 H 0.224 0.776 54 H -0.221 1.221 55 H -0.216 1.216 Dipole moment (debyes) X Y Z Total from point charges 2.484 -0.800 1.393 2.959 hybrid contribution -0.090 1.840 -1.184 2.190 sum 2.394 1.040 0.209 2.619 Atomic orbital electron populations 1.21788 0.94856 1.02221 1.01949 1.21463 0.96689 0.94220 1.02348 1.21275 0.90875 0.98148 0.99898 1.21844 1.03053 0.99655 0.95855 1.21976 0.98179 0.88595 0.90603 1.20877 0.81734 0.90482 0.77033 1.90719 1.55592 1.51451 1.45164 1.45716 1.14945 1.14212 1.60068 1.21920 0.96010 0.82679 0.98653 0.89072 1.23311 0.93183 1.04778 0.94616 1.22854 0.94588 0.99030 0.96851 0.89611 1.22038 1.01031 1.02228 0.73095 1.48944 1.54421 1.05208 1.07086 1.23161 1.00124 0.94035 0.92087 1.21861 1.16713 0.96071 0.97635 1.24303 0.99422 0.95845 0.96047 1.77245 1.25501 1.12132 1.00891 1.23537 0.96330 1.00893 0.97093 1.43719 1.38838 1.22018 1.05309 1.21935 1.06216 1.03544 0.83188 1.21113 1.03745 0.97673 0.99829 1.20949 1.06297 1.03257 0.90863 1.21020 1.02134 0.92749 0.97247 1.25057 1.10904 0.93973 0.86776 1.86537 1.67841 1.39079 1.41371 0.93233 0.71814 0.83509 0.81580 0.91927 0.93208 0.92019 0.91348 0.92083 0.91277 0.93785 0.91576 0.90563 0.83398 0.75820 0.85859 0.89941 0.85564 0.89034 0.77918 0.82299 0.78833 0.93165 0.87414 0.83165 0.83512 0.81348 0.84692 0.77644 1.22051 1.21626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.10 9.67 71.98 0.70 0.60 16 2 C -0.11 -0.14 5.27 30.60 0.16 0.02 16 3 C -0.08 -0.25 1.50 -10.79 -0.02 -0.27 16 4 C -0.15 -0.37 8.78 71.98 0.63 0.27 16 5 C 0.11 0.23 2.01 44.24 0.09 0.32 16 6 C 0.51 2.47 6.16 87.66 0.54 3.01 16 7 O -0.55 -6.54 15.06 -3.04 -0.05 -6.59 16 8 N -0.70 0.08 5.26 -440.05 -2.31 -2.24 16 9 C 0.11 -0.16 4.26 45.52 0.19 0.04 16 10 H 0.09 0.19 7.57 -2.39 -0.02 0.18 16 11 C -0.12 0.81 7.38 31.12 0.23 1.04 16 12 C -0.11 0.47 3.76 -10.18 -0.04 0.43 16 13 H 0.09 0.01 7.97 -2.39 -0.02 -0.01 16 14 C 0.14 -0.66 6.35 86.38 0.55 -0.12 16 15 N -0.37 -0.65 3.68 -348.07 -1.28 -1.93 16 16 C 0.05 -0.02 11.45 83.54 0.96 0.94 16 17 C -0.29 -0.58 10.80 21.99 0.24 -0.34 16 18 C 0.03 0.13 12.03 85.24 1.03 1.16 16 19 N -0.34 -2.44 12.28 -57.01 -0.70 -3.14 16 20 C -0.14 0.31 7.45 31.21 0.23 0.54 16 21 N -0.42 -0.93 1.57 -491.49 -0.77 -1.70 16 22 C -0.02 -0.09 10.44 83.21 0.87 0.78 16 23 C -0.20 -0.55 10.86 22.14 0.24 -0.31 16 24 C -0.19 0.01 9.43 22.14 0.21 0.22 16 25 C -0.02 0.00 6.15 41.08 0.25 0.25 16 26 C -0.06 0.18 2.97 71.24 0.21 0.39 16 27 O -0.54 1.08 9.85 -148.98 -1.47 -0.39 16 28 Si 0.80 -3.02 31.13 68.60 2.14 -0.88 16 29 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.06 0.00 6.47 -2.39 -0.02 -0.02 16 32 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.06 0.21 7.14 -2.39 -0.02 0.19 16 34 H 0.07 0.50 7.59 -2.39 -0.02 0.48 16 35 H 0.04 0.27 7.08 -2.39 -0.02 0.25 16 36 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.08 0.10 6.37 -2.39 -0.02 0.08 16 38 H 0.15 0.04 5.18 -2.39 -0.01 0.03 16 39 H 0.41 -1.50 7.01 -92.70 -0.65 -2.15 16 40 H 0.12 -1.28 8.10 -2.39 -0.02 -1.30 16 41 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 42 H 0.13 -1.34 7.78 -2.39 -0.02 -1.36 16 43 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 44 H 0.20 -1.63 8.06 -2.91 -0.02 -1.65 16 45 H 0.16 -0.27 8.06 -2.91 -0.02 -0.29 16 46 H 0.19 -0.03 8.06 -2.91 -0.02 -0.05 16 47 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 48 H 0.11 -0.55 7.91 -2.39 -0.02 -0.56 16 49 H 0.15 0.89 8.06 -2.91 -0.02 0.86 16 50 H 0.15 0.06 8.06 -2.91 -0.02 0.03 16 51 H 0.17 -0.93 6.88 -2.91 -0.02 -0.95 16 52 H 0.14 -0.68 7.96 -2.39 -0.02 -0.70 16 53 H 0.37 -2.08 7.00 -74.06 -0.52 -2.60 16 54 H -0.29 -0.84 7.11 99.48 0.71 -0.13 16 55 H -0.29 -0.49 7.11 99.48 0.71 0.22 16 Total: 0.00 -20.86 435.03 2.59 -18.27 By element: Atomic # 1 Polarization: -10.11 SS G_CDS: -0.24 Total: -10.35 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 7.27 Total: 8.95 kcal Atomic # 7 Polarization: -3.95 SS G_CDS: -5.06 Total: -9.01 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -1.51 Total: -6.98 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: 2.14 Total: -0.88 kcal Total: -20.86 2.59 -18.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_12360566.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.440 kcal (2) G-P(sol) polarization free energy of solvation -20.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds