Wall clock time and date at job start Sun Mar 7 2021 04:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 C 1.50698 * 109.47321 * 239.99522 * 2 1 3 5 5 C 1.38409 * 119.82460 * 119.72167 * 4 2 1 6 6 C 1.37882 * 120.16839 * 179.76599 * 5 4 2 7 7 C 1.39836 * 119.82983 * 0.53342 * 6 5 4 8 8 C 1.47200 * 120.17373 * 179.70142 * 7 6 5 9 9 C 1.34810 * 120.00057 * 0.02562 * 8 7 6 10 10 C 1.46425 * 120.00181 * 180.02562 * 9 8 7 11 11 O 1.21698 * 120.00020 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00077 * 180.02562 * 10 9 8 13 13 C 1.46494 * 119.99903 * 180.02562 * 12 10 9 14 14 H 1.09001 * 112.85080 * 336.19163 * 13 12 10 15 15 C 1.53784 * 113.61798 * 107.50068 * 13 12 10 16 16 C 1.53785 * 87.08062 * 89.11577 * 15 13 12 17 17 H 1.09006 * 113.68982 * 270.87848 * 16 15 13 18 18 C 1.52995 * 113.61614 * 139.98679 * 16 15 13 19 19 N 1.46499 * 109.47229 * 87.49910 * 18 16 15 20 20 C 1.34953 * 126.03340 * 124.71714 * 19 18 16 21 21 C 1.35321 * 107.74260 * 179.83903 * 20 19 18 22 22 C 1.39872 * 107.91829 * 0.42546 * 21 20 19 23 23 N 1.30839 * 108.20463 * 359.73530 * 22 21 20 24 24 C 1.53785 * 113.61516 * 205.00018 * 13 12 10 25 25 C 1.39843 * 119.65846 * 359.72417 * 7 6 5 26 26 C 1.37893 * 119.82453 * 0.02562 * 25 7 6 27 27 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 28 28 H 1.09001 * 109.47103 * 119.99412 * 2 1 3 29 29 H 1.48496 * 110.00262 * 59.99721 * 3 2 1 30 30 H 1.48497 * 109.99780 * 181.31712 * 3 2 1 31 31 H 1.08000 * 119.91241 * 0.02652 * 5 4 2 32 32 H 1.07998 * 120.08951 * 180.25860 * 6 5 4 33 33 H 1.08006 * 120.00433 * 180.02562 * 8 7 6 34 34 H 1.07997 * 119.99737 * 0.02562 * 9 8 7 35 35 H 0.97000 * 120.00217 * 359.97438 * 12 10 9 36 36 H 1.08994 * 113.61506 * 203.66120 * 15 13 12 37 37 H 1.08999 * 113.60960 * 334.57019 * 15 13 12 38 38 H 1.09001 * 109.47038 * 207.50427 * 18 16 15 39 39 H 1.09003 * 109.46613 * 327.50133 * 18 16 15 40 40 H 1.07991 * 126.12976 * 0.02562 * 20 19 18 41 41 H 1.07996 * 126.04132 * 180.16045 * 21 20 19 42 42 H 1.08002 * 125.89521 * 179.76311 * 22 21 20 43 43 H 1.09005 * 113.61429 * 25.42848 * 24 13 12 44 44 H 1.08999 * 113.62033 * 156.33498 * 24 13 12 45 45 H 1.07996 * 120.08750 * 180.02562 * 25 7 6 46 46 H 1.07993 * 119.91365 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7222 -0.0327 -2.1420 6 6 3.1897 -0.6773 -3.2677 7 6 2.8537 -2.0159 -3.4928 8 6 3.3433 -2.7094 -4.6953 9 6 4.1180 -2.0542 -5.5829 10 6 4.6045 -2.7439 -6.7795 11 8 4.3090 -3.9085 -6.9729 12 7 5.3795 -2.0889 -7.6666 13 6 5.8657 -2.7788 -8.8640 14 1 5.9032 -3.8615 -8.7428 15 6 5.1730 -2.3258 -10.1601 16 6 6.2639 -1.2477 -10.2733 17 1 6.0121 -0.3152 -9.7681 18 6 6.7669 -1.0325 -11.7020 19 7 5.9192 -0.0450 -12.3746 20 6 6.3412 1.0926 -12.9655 21 6 5.2552 1.7224 -13.4705 22 6 4.1300 0.9480 -13.1696 23 7 4.5268 -0.1117 -12.5127 24 6 7.1596 -2.1781 -9.4384 25 6 2.0499 -2.6922 -2.5697 26 6 1.5944 -2.0354 -1.4461 27 1 -0.3933 0.4417 -0.7650 28 1 1.7924 -0.5137 0.8900 29 1 1.5614 2.4679 1.2084 30 1 3.5345 1.7703 -0.0321 31 1 2.9771 1.0024 -1.9690 32 1 3.8100 -0.1484 -3.9761 33 1 3.0818 -3.7433 -4.8666 34 1 4.3798 -1.0206 -5.4114 35 1 5.6147 -1.1606 -7.5126 36 1 5.2089 -3.0685 -10.9569 37 1 4.1735 -1.9206 -10.0023 38 1 7.7948 -0.6706 -11.6747 39 1 6.7282 -1.9758 -12.2468 40 1 7.3629 1.4369 -13.0273 41 1 5.2564 2.6598 -14.0069 42 1 3.1098 1.1838 -13.4342 43 1 7.7638 -1.6538 -8.6980 44 1 7.7385 -2.8805 -10.0380 45 1 1.7866 -3.7262 -2.7364 46 1 0.9733 -2.5562 -0.7325 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_12360594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:06 Heat of formation + Delta-G solvation = 87.850660 kcal Electronic energy + Delta-G solvation = -27190.366992 eV Core-core repulsion = 23242.690049 eV Total energy + Delta-G solvation = -3947.676943 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.04300 -41.28546 -40.61435 -39.48939 -37.77784 -35.09520 -35.05443 -33.43542 -32.22245 -31.26758 -30.90398 -28.64122 -27.15626 -26.69911 -24.80497 -24.04153 -23.57219 -22.16215 -21.88494 -21.59045 -20.54729 -20.23410 -18.90727 -18.25599 -18.00797 -17.28109 -16.87832 -16.61315 -16.35140 -16.19772 -16.07463 -15.77459 -15.56075 -15.22201 -15.03261 -14.87273 -14.72640 -14.57731 -14.37040 -14.16693 -13.85148 -13.66311 -13.54796 -13.39329 -13.29876 -13.04583 -12.80965 -12.28379 -12.18653 -12.04924 -11.72358 -11.66081 -11.56074 -11.38791 -11.22633 -11.13224 -10.44993 -10.31313 -10.13124 -10.00730 -9.45826 -9.26735 -5.00698 -0.58480 0.37294 0.85332 1.04245 1.30156 1.62438 1.70428 1.96108 1.98475 2.10172 2.18712 2.79279 3.35561 3.45604 3.47827 3.55848 3.65684 3.69521 3.78242 3.81814 3.92268 4.03895 4.11466 4.13556 4.17602 4.24590 4.33808 4.37672 4.42456 4.47911 4.50362 4.68451 4.74705 4.80451 4.81498 4.83779 4.94535 4.95148 5.02185 5.05456 5.06682 5.14084 5.16460 5.19054 5.35838 5.45781 5.56701 5.57848 5.78507 5.87830 6.22405 6.48613 6.74382 6.82649 7.16805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.079 4.079 3 Si 0.780 3.220 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.094 4.094 7 C -0.082 4.082 8 C -0.019 4.019 9 C -0.210 4.210 10 C 0.543 3.457 11 O -0.592 6.592 12 N -0.695 5.695 13 C 0.108 3.892 14 H 0.083 0.917 15 C -0.136 4.136 16 C -0.108 4.108 17 H 0.091 0.909 18 C 0.134 3.866 19 N -0.375 5.375 20 C 0.053 3.947 21 C -0.293 4.293 22 C 0.025 3.975 23 N -0.331 5.331 24 C -0.116 4.116 25 C -0.102 4.102 26 C -0.107 4.107 27 H 0.396 0.604 28 H 0.106 0.894 29 H -0.303 1.303 30 H -0.281 1.281 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.122 0.878 34 H 0.164 0.836 35 H 0.416 0.584 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.131 0.869 39 H 0.087 0.913 40 H 0.206 0.794 41 H 0.159 0.841 42 H 0.192 0.808 43 H 0.095 0.905 44 H 0.115 0.885 45 H 0.136 0.864 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.326 6.646 -2.199 8.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.189 4.189 3 Si 0.686 3.314 4 C -0.112 4.112 5 C -0.139 4.139 6 C -0.112 4.112 7 C -0.082 4.082 8 C -0.039 4.039 9 C -0.230 4.230 10 C 0.334 3.666 11 O -0.475 6.475 12 N -0.345 5.345 13 C 0.003 3.997 14 H 0.101 0.899 15 C -0.175 4.175 16 C -0.127 4.127 17 H 0.109 0.891 18 C 0.014 3.986 19 N -0.158 5.158 20 C -0.094 4.094 21 C -0.322 4.322 22 C -0.160 4.160 23 N -0.153 5.153 24 C -0.154 4.154 25 C -0.120 4.120 26 C -0.125 4.125 27 H 0.246 0.754 28 H 0.124 0.876 29 H -0.231 1.231 30 H -0.208 1.208 31 H 0.168 0.832 32 H 0.174 0.826 33 H 0.140 0.860 34 H 0.181 0.819 35 H 0.254 0.746 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.149 0.851 39 H 0.105 0.895 40 H 0.223 0.777 41 H 0.177 0.823 42 H 0.209 0.791 43 H 0.114 0.886 44 H 0.134 0.866 45 H 0.154 0.846 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.443 4.921 -0.760 7.377 hybrid contribution -0.055 0.184 -0.152 0.245 sum 5.387 5.104 -0.912 7.477 Atomic orbital electron populations 1.86475 1.17226 1.82202 1.50523 1.25273 0.85341 1.11149 0.97140 0.93674 0.77872 0.74988 0.84824 1.20628 0.98449 0.95101 0.97004 1.21182 0.98067 1.00443 0.94212 1.21651 0.98706 0.93243 0.97600 1.19108 0.99636 0.94667 0.94801 1.22372 0.91545 0.99173 0.90828 1.22987 1.03148 1.02304 0.94543 1.18783 0.77899 0.85956 0.83982 1.90814 1.59448 1.18988 1.78213 1.45447 1.51164 1.16044 1.21893 1.21903 0.96275 0.97402 0.84169 0.89866 1.23365 0.98252 0.98532 0.97381 1.22757 0.97063 0.98175 0.94667 0.89071 1.22064 0.93415 0.91462 0.91653 1.48992 1.04935 1.18296 1.43594 1.23193 1.01852 0.87754 0.96578 1.21854 0.91709 1.05497 1.13155 1.24311 1.01422 0.92674 0.97631 1.77342 0.90847 1.23734 1.23404 1.23282 0.94936 0.98368 0.98842 1.21613 0.96265 1.00570 0.93595 1.21065 0.99506 0.94336 0.97616 0.75443 0.87644 1.23097 1.20800 0.83245 0.82558 0.86049 0.81871 0.74642 0.89422 0.93324 0.85120 0.89511 0.77682 0.82305 0.79092 0.88649 0.86627 0.84642 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.05 12.76 -148.98 -1.90 -1.85 16 2 C -0.08 0.10 2.82 71.24 0.20 0.30 16 3 Si 0.78 -2.72 29.77 68.60 2.04 -0.68 16 4 C -0.11 0.09 5.40 -19.79 -0.11 -0.01 16 5 C -0.12 0.42 8.65 22.23 0.19 0.61 16 6 C -0.09 0.31 9.41 22.57 0.21 0.52 16 7 C -0.08 -0.02 5.87 -20.15 -0.12 -0.14 16 8 C -0.02 -0.03 9.46 23.84 0.23 0.19 16 9 C -0.21 0.09 9.41 23.62 0.22 0.31 16 10 C 0.54 2.87 7.74 86.37 0.67 3.54 16 11 O -0.59 -8.86 15.83 -4.34 -0.07 -8.92 16 12 N -0.70 0.65 5.26 -444.25 -2.34 -1.69 16 13 C 0.11 -0.04 4.32 45.52 0.20 0.15 16 14 H 0.08 0.38 7.46 -2.39 -0.02 0.36 16 15 C -0.14 -0.11 7.43 31.12 0.23 0.12 16 16 C -0.11 0.55 3.70 -10.27 -0.04 0.51 16 17 H 0.09 -0.36 8.14 -2.38 -0.02 -0.38 16 18 C 0.13 -0.75 6.35 86.38 0.55 -0.20 16 19 N -0.38 -0.36 3.68 -348.06 -1.28 -1.64 16 20 C 0.05 -0.09 11.45 83.54 0.96 0.87 16 21 C -0.29 -0.27 10.80 21.99 0.24 -0.04 16 22 C 0.02 0.11 12.03 85.24 1.02 1.13 16 23 N -0.33 -2.34 12.42 -57.02 -0.71 -3.05 16 24 C -0.12 0.91 7.39 31.12 0.23 1.14 16 25 C -0.10 -0.10 9.80 22.58 0.22 0.12 16 26 C -0.11 -0.10 9.59 22.23 0.21 0.11 16 27 H 0.40 -3.22 8.70 -74.06 -0.64 -3.87 16 28 H 0.11 0.03 7.96 -2.39 -0.02 0.01 16 29 H -0.30 -1.41 7.11 99.48 0.71 -0.70 16 30 H -0.28 -0.13 7.11 99.48 0.71 0.57 16 31 H 0.15 -1.20 4.85 -2.91 -0.01 -1.21 16 32 H 0.16 -1.41 6.17 -2.91 -0.02 -1.43 16 33 H 0.12 0.58 7.52 -2.91 -0.02 0.56 16 34 H 0.16 -1.31 6.07 -2.91 -0.02 -1.33 16 35 H 0.42 -3.03 8.68 -92.71 -0.80 -3.84 16 36 H 0.09 0.13 7.90 -2.39 -0.02 0.11 16 37 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.13 -1.60 8.07 -2.39 -0.02 -1.61 16 39 H 0.09 -0.45 7.84 -2.39 -0.02 -0.47 16 40 H 0.21 -2.02 8.06 -2.92 -0.02 -2.04 16 41 H 0.16 -0.44 8.06 -2.91 -0.02 -0.47 16 42 H 0.19 -0.04 8.06 -2.91 -0.02 -0.06 16 43 H 0.09 -0.99 8.14 -2.38 -0.02 -1.01 16 44 H 0.12 -1.20 8.10 -2.39 -0.02 -1.22 16 45 H 0.14 -0.13 8.06 -2.91 -0.02 -0.15 16 46 H 0.13 0.08 8.06 -2.91 -0.02 0.05 16 Total: 0.00 -27.09 389.58 0.67 -26.42 By element: Atomic # 1 Polarization: -17.42 SS G_CDS: -0.40 Total: -17.82 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 5.32 Total: 9.23 kcal Atomic # 7 Polarization: -2.06 SS G_CDS: -4.32 Total: -6.38 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.97 Total: -10.78 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: 2.04 Total: -0.68 kcal Total: -27.09 0.67 -26.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_12360594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.274 kcal (2) G-P(sol) polarization free energy of solvation -27.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds