Wall clock time and date at job start Sun Mar 7 2021 04:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86297 * 109.46638 * 2 1 4 4 C 1.50696 * 109.47284 * 119.99970 * 2 1 3 5 5 C 1.38194 * 119.84177 * 255.02493 * 4 2 1 6 6 C 1.38310 * 120.14341 * 179.74254 * 5 4 2 7 7 F 1.35103 * 120.08462 * 180.27211 * 6 5 4 8 8 C 1.39798 * 119.83353 * 0.48846 * 6 5 4 9 9 C 1.47694 * 120.15770 * 179.76247 * 8 6 5 10 10 O 1.21571 * 119.99819 * 359.72761 * 9 8 6 11 11 N 1.34776 * 120.00379 * 179.72168 * 9 8 6 12 12 C 1.46501 * 119.99996 * 179.97438 * 11 9 8 13 13 H 1.08998 * 112.85219 * 23.81145 * 12 11 9 14 14 C 1.53789 * 113.61291 * 155.00249 * 12 11 9 15 15 C 1.53780 * 87.07896 * 89.20051 * 14 12 11 16 16 H 1.09000 * 113.61752 * 270.80252 * 15 14 12 17 17 C 1.52999 * 113.61294 * 139.97876 * 15 14 12 18 18 N 1.46504 * 109.47110 * 174.99939 * 17 15 14 19 19 C 1.34951 * 126.03463 * 125.02908 * 18 17 15 20 20 C 1.35320 * 107.74569 * 180.02562 * 19 18 17 21 21 C 1.39866 * 107.91898 * 359.97438 * 20 19 18 22 22 N 1.30844 * 108.20609 * 0.02562 * 21 20 19 23 23 C 1.53777 * 113.69423 * 252.53684 * 12 11 9 24 24 C 1.39657 * 119.68949 * 359.49033 * 8 6 5 25 25 C 1.38071 * 119.85309 * 0.27917 * 24 8 6 26 26 F 1.35092 * 119.91615 * 180.02562 * 25 24 8 27 27 H 0.96697 * 113.99744 * 299.99607 * 1 2 3 28 28 H 1.09002 * 109.46993 * 240.00301 * 2 1 3 29 29 H 1.48504 * 110.00307 * 299.99833 * 3 2 1 30 30 H 1.48497 * 110.00329 * 61.32214 * 3 2 1 31 31 H 1.08000 * 119.92502 * 0.02562 * 5 4 2 32 32 H 0.96998 * 120.00155 * 0.02562 * 11 9 8 33 33 H 1.08998 * 113.61052 * 334.65487 * 14 12 11 34 34 H 1.08989 * 113.61467 * 203.74776 * 14 12 11 35 35 H 1.09001 * 109.46735 * 55.00412 * 17 15 14 36 36 H 1.08995 * 109.47484 * 295.00057 * 17 15 14 37 37 H 1.07996 * 126.12664 * 359.95494 * 19 18 17 38 38 H 1.07992 * 126.03988 * 180.02562 * 20 19 18 39 39 H 1.08004 * 125.89910 * 179.97438 * 21 20 19 40 40 H 1.09001 * 113.61651 * 156.32736 * 23 12 11 41 41 H 1.09003 * 113.61238 * 25.42698 * 23 12 11 42 42 H 1.08001 * 120.07517 * 180.25261 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.4527 0.0199 2.2815 6 6 2.9106 -0.6253 3.4159 7 9 3.4149 0.0902 4.4450 8 6 2.8545 -2.0200 3.4932 9 6 3.3464 -2.7167 4.6990 10 8 3.8059 -2.0774 5.6254 11 7 3.2856 -4.0611 4.7726 12 6 3.7741 -4.7521 5.9685 13 1 3.7707 -4.1178 6.8549 14 6 3.1250 -6.1280 6.1932 15 6 4.2549 -6.7143 5.3304 16 1 4.0235 -6.7386 4.2655 17 6 4.7951 -8.0475 5.8516 18 7 5.7773 -8.5804 4.9041 19 6 7.0472 -8.9346 5.1921 20 6 7.6217 -9.3759 4.0492 21 6 6.6701 -9.2889 3.0278 22 7 5.5641 -8.8120 3.5391 23 6 5.0998 -5.5004 5.7516 24 6 2.3259 -2.7512 2.4272 25 6 1.8680 -2.0935 1.3028 26 9 1.3560 -2.7995 0.2711 27 1 -0.3933 0.4416 0.7651 28 1 1.7924 -0.5138 -0.8900 29 1 1.5614 2.4679 -1.2085 30 1 1.5878 2.4586 1.2242 31 1 2.4983 1.0971 2.2187 32 1 2.9192 -4.5712 4.0334 33 1 2.1371 -6.2235 5.7425 34 1 3.1516 -6.4591 7.2312 35 1 3.9732 -8.7553 5.9594 36 1 5.2711 -7.8931 6.8199 37 1 7.5206 -8.8753 6.1610 38 1 8.6355 -9.7330 3.9443 39 1 6.8222 -9.5666 1.9952 40 1 5.6664 -5.6600 6.6691 41 1 5.7063 -5.0893 4.9445 42 1 2.2758 -3.8286 2.4819 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_12360598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:10 Heat of formation + Delta-G solvation = -7.609366 kcal Electronic energy + Delta-G solvation = -30052.141946 eV Core-core repulsion = 25445.181354 eV Total energy + Delta-G solvation = -4606.960592 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.123 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.15065 -50.14244 -42.08784 -41.59668 -40.40051 -39.37395 -37.79478 -35.27820 -33.89941 -32.85437 -31.42806 -30.96930 -28.76387 -27.71767 -26.75337 -24.71596 -24.44679 -23.62067 -22.18654 -21.92405 -21.61691 -20.25113 -19.79604 -18.90468 -18.58877 -18.20539 -17.96527 -17.43670 -17.12600 -16.89195 -16.63583 -16.44506 -16.27551 -16.01228 -15.89732 -15.80719 -15.61485 -15.42733 -15.15911 -14.70810 -14.58246 -14.26658 -14.16293 -13.90061 -13.83181 -13.55943 -13.46705 -13.22570 -13.05431 -12.78138 -12.44708 -12.23951 -11.94296 -11.67631 -11.56721 -11.35537 -11.31881 -10.81088 -10.65231 -10.32717 -10.22624 -9.87163 -9.45697 -4.97049 -0.86726 -0.35834 1.02027 1.13967 1.32079 1.52690 1.68350 1.77109 1.89844 1.96874 2.17591 2.73887 2.79530 3.06212 3.20473 3.36294 3.41350 3.45707 3.49178 3.53622 3.73111 3.76923 3.97273 4.10288 4.12056 4.21684 4.27608 4.34735 4.41082 4.47626 4.52687 4.63599 4.64843 4.68359 4.70415 4.73743 4.79698 4.92301 4.95979 5.03650 5.10349 5.17771 5.33159 5.47476 5.77141 6.19950 6.22700 6.37136 6.79711 6.91011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.088 4.088 3 Si 0.774 3.226 4 C -0.089 4.089 5 C -0.129 4.129 6 C 0.142 3.858 7 F -0.123 7.123 8 C -0.148 4.148 9 C 0.561 3.439 10 O -0.558 6.558 11 N -0.693 5.693 12 C 0.111 3.889 13 H 0.095 0.905 14 C -0.119 4.119 15 C -0.116 4.116 16 H 0.088 0.912 17 C 0.135 3.865 18 N -0.374 5.374 19 C 0.052 3.948 20 C -0.295 4.295 21 C 0.028 3.972 22 N -0.334 5.334 23 C -0.142 4.142 24 C -0.079 4.079 25 C 0.104 3.896 26 F -0.128 7.128 27 H 0.390 0.610 28 H 0.132 0.868 29 H -0.293 1.293 30 H -0.269 1.269 31 H 0.173 0.827 32 H 0.413 0.587 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.203 0.797 38 H 0.158 0.842 39 H 0.195 0.805 40 H 0.108 0.892 41 H 0.050 0.950 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 -2.690 1.396 3.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.197 4.197 3 Si 0.677 3.323 4 C -0.091 4.091 5 C -0.147 4.147 6 C 0.121 3.879 7 F -0.101 7.101 8 C -0.153 4.153 9 C 0.348 3.652 10 O -0.437 6.437 11 N -0.345 5.345 12 C 0.006 3.994 13 H 0.113 0.887 14 C -0.157 4.157 15 C -0.135 4.135 16 H 0.107 0.893 17 C 0.015 3.985 18 N -0.156 5.156 19 C -0.094 4.094 20 C -0.324 4.324 21 C -0.157 4.157 22 N -0.156 5.156 23 C -0.181 4.181 24 C -0.098 4.098 25 C 0.084 3.916 26 F -0.106 7.106 27 H 0.240 0.760 28 H 0.149 0.851 29 H -0.221 1.221 30 H -0.195 1.195 31 H 0.190 0.810 32 H 0.251 0.749 33 H 0.106 0.894 34 H 0.141 0.859 35 H 0.110 0.890 36 H 0.143 0.857 37 H 0.220 0.780 38 H 0.176 0.824 39 H 0.212 0.788 40 H 0.126 0.874 41 H 0.069 0.931 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.328 -1.355 1.405 1.979 hybrid contribution -0.270 -0.675 0.114 0.736 sum 0.058 -2.030 1.519 2.536 Atomic orbital electron populations 1.86658 1.17441 1.80443 1.50252 1.25338 0.84221 1.12801 0.97294 0.93798 0.90079 0.70917 0.77486 1.20462 0.98721 0.92451 0.97426 1.21120 1.00159 1.02452 0.90977 1.17771 0.96200 0.88301 0.85617 1.91607 1.84079 1.77524 1.56909 1.19805 1.06447 0.92479 0.96540 1.18049 0.78254 0.82899 0.86020 1.90865 1.46506 1.66762 1.39533 1.45482 1.62944 1.05321 1.20732 1.21945 0.95619 0.93790 0.88028 0.88711 1.23322 0.98093 0.91888 1.02443 1.22836 0.97319 0.92620 1.00693 0.89326 1.22065 0.91292 0.94827 0.90298 1.48966 1.10582 1.49226 1.06870 1.23153 0.85614 0.98859 1.01818 1.21855 1.02899 1.14998 0.92629 1.24299 0.90998 0.98818 1.01546 1.77237 1.24566 1.23451 0.90389 1.23522 0.96372 0.95768 1.02411 1.21312 0.96157 1.02148 0.90206 1.17352 0.99170 0.89138 0.85931 1.91571 1.84384 1.78220 1.56438 0.76003 0.85053 1.22080 1.19470 0.80954 0.74900 0.89410 0.85928 0.88977 0.85654 0.77978 0.82403 0.78822 0.87403 0.93068 0.80769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.16 12.88 -148.98 -1.92 -2.08 16 2 C -0.09 0.26 2.44 71.23 0.17 0.43 16 3 Si 0.77 -3.70 30.24 68.60 2.07 -1.63 16 4 C -0.09 0.20 5.27 -19.78 -0.10 0.10 16 5 C -0.13 0.26 8.62 22.28 0.19 0.45 16 6 C 0.14 0.43 7.28 22.66 0.17 0.60 16 7 F -0.12 -1.08 15.55 44.97 0.70 -0.38 16 8 C -0.15 -0.24 5.88 -20.06 -0.12 -0.36 16 9 C 0.56 2.73 7.77 86.74 0.67 3.41 16 10 O -0.56 -7.49 14.94 -3.94 -0.06 -7.54 16 11 N -0.69 1.21 5.22 -443.04 -2.31 -1.10 16 12 C 0.11 -0.32 4.32 45.52 0.20 -0.12 16 13 H 0.09 0.07 7.46 -2.39 -0.02 0.05 16 14 C -0.12 1.02 7.39 31.12 0.23 1.25 16 15 C -0.12 0.66 3.75 -10.27 -0.04 0.62 16 16 H 0.09 -0.17 7.96 -2.39 -0.02 -0.19 16 17 C 0.14 -0.82 6.35 86.38 0.55 -0.27 16 18 N -0.37 -0.29 3.68 -348.06 -1.28 -1.57 16 19 C 0.05 -0.06 11.45 83.54 0.96 0.90 16 20 C -0.29 -0.38 10.80 21.99 0.24 -0.14 16 21 C 0.03 0.11 12.03 85.23 1.02 1.13 16 22 N -0.33 -2.07 12.27 -57.02 -0.70 -2.77 16 23 C -0.14 0.51 7.43 31.12 0.23 0.74 16 24 C -0.08 0.23 9.51 22.57 0.21 0.45 16 25 C 0.10 -0.10 7.23 22.33 0.16 0.06 16 26 F -0.13 -0.25 16.73 44.97 0.75 0.50 16 27 H 0.39 -2.40 8.70 -74.06 -0.64 -3.05 16 28 H 0.13 -0.50 7.89 -2.39 -0.02 -0.51 16 29 H -0.29 -0.85 7.11 99.48 0.71 -0.14 16 30 H -0.27 0.62 6.68 99.48 0.66 1.29 16 31 H 0.17 -0.93 4.83 -2.91 -0.01 -0.95 16 32 H 0.41 -2.81 6.74 -92.71 -0.62 -3.44 16 33 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 34 H 0.12 -1.48 8.10 -2.39 -0.02 -1.50 16 35 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 36 H 0.13 -1.46 7.77 -2.39 -0.02 -1.48 16 37 H 0.20 -1.75 8.06 -2.91 -0.02 -1.77 16 38 H 0.16 -0.35 8.06 -2.91 -0.02 -0.37 16 39 H 0.19 -0.20 8.06 -2.91 -0.02 -0.23 16 40 H 0.11 -0.68 7.90 -2.39 -0.02 -0.70 16 41 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.18 -1.50 6.41 -2.91 -0.02 -1.52 16 Total: 0.00 -25.08 365.15 1.83 -23.25 By element: Atomic # 1 Polarization: -15.75 SS G_CDS: -0.17 Total: -15.93 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 4.75 Total: 9.24 kcal Atomic # 7 Polarization: -1.15 SS G_CDS: -4.29 Total: -5.44 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -1.98 Total: -9.62 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 1.45 Total: 0.13 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: 2.07 Total: -1.63 kcal Total: -25.08 1.83 -23.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_12360598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.637 kcal (2) G-P(sol) polarization free energy of solvation -25.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds