Wall clock time and date at job start Sun Mar 7 2021 04:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35660 * 117.00006 * 2 1 4 4 C 1.40141 * 120.14907 * 180.02562 * 3 2 1 5 5 C 1.47534 * 120.19507 * 359.97438 * 4 3 2 6 6 O 1.21593 * 119.99836 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00497 * 179.97438 * 5 4 3 8 8 C 1.46491 * 120.00169 * 179.97438 * 7 5 4 9 9 H 1.08995 * 112.85316 * 336.19603 * 8 7 5 10 10 C 1.53788 * 113.61335 * 107.50617 * 8 7 5 11 11 C 1.53780 * 87.08270 * 89.11539 * 10 8 7 12 12 H 1.09003 * 113.68807 * 270.87270 * 11 10 8 13 13 C 1.52998 * 113.61534 * 139.98046 * 11 10 8 14 14 N 1.46501 * 109.46620 * 87.50094 * 13 11 10 15 15 C 1.34948 * 126.03269 * 124.72336 * 14 13 11 16 16 C 1.35324 * 107.74546 * 179.83862 * 15 14 13 17 17 C 1.39872 * 107.91819 * 0.41304 * 16 15 14 18 18 N 1.30837 * 108.19909 * 359.74523 * 17 16 15 19 19 C 1.53782 * 113.61662 * 205.00076 * 8 7 5 20 20 C 1.39713 * 119.61496 * 179.97438 * 4 3 2 21 21 C 1.37787 * 119.90582 * 359.97438 * 20 4 3 22 22 C 1.50703 * 119.84676 * 179.97438 * 21 20 4 23 23 O 1.42896 * 109.47055 * 300.00329 * 22 21 20 24 24 Si 1.86304 * 109.46911 * 180.02562 * 22 21 20 25 25 C 1.38549 * 120.30352 * 0.25632 * 21 20 4 26 26 C 1.38055 * 120.38767 * 359.48691 * 25 21 20 27 27 H 1.08999 * 109.46850 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46698 * 300.00371 * 1 2 3 29 29 H 1.08998 * 109.47118 * 59.99962 * 1 2 3 30 30 H 0.97002 * 119.99671 * 0.02562 * 7 5 4 31 31 H 1.08999 * 113.61258 * 203.66349 * 10 8 7 32 32 H 1.08999 * 113.61285 * 334.56290 * 10 8 7 33 33 H 1.08997 * 109.47227 * 207.49912 * 13 11 10 34 34 H 1.09004 * 109.47204 * 327.50350 * 13 11 10 35 35 H 1.08001 * 126.13266 * 359.97438 * 15 14 13 36 36 H 1.07994 * 126.03972 * 180.16038 * 16 15 14 37 37 H 1.07990 * 125.89874 * 179.75934 * 17 16 15 38 38 H 1.09001 * 113.61534 * 25.42951 * 19 8 7 39 39 H 1.08997 * 113.61987 * 156.25172 * 19 8 7 40 40 H 1.07995 * 120.04489 * 180.02562 * 20 4 3 41 41 H 1.09002 * 109.47152 * 60.00137 * 22 21 20 42 42 H 0.96708 * 114.00101 * 299.99358 * 23 22 21 43 43 H 1.48501 * 109.99652 * 179.97438 * 24 22 21 44 44 H 1.48494 * 110.00064 * 301.31786 * 24 22 21 45 45 H 1.08001 * 119.80477 * 179.71928 * 25 21 20 46 46 H 1.07997 * 119.96200 * 180.28479 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4441 1.2857 -0.0005 5 6 4.2551 0.0532 -0.0005 6 8 3.7095 -1.0334 0.0004 7 7 5.6005 0.1317 -0.0016 8 6 6.4057 -1.0921 -0.0010 9 1 5.8709 -1.9504 0.4055 10 6 7.0974 -1.3750 -1.3451 11 6 8.2764 -0.5355 -0.8255 12 1 8.1901 0.5275 -1.0508 13 6 9.6463 -1.1109 -1.1905 14 7 10.0519 -0.6091 -2.5058 15 6 11.2001 0.0415 -2.7877 16 6 11.1961 0.3310 -4.1096 17 6 10.0005 -0.1511 -4.6522 18 7 9.3139 -0.7148 -3.6917 19 6 7.8115 -0.9043 0.5933 20 6 4.0668 2.5364 -0.0011 21 6 3.3037 3.6837 -0.0016 22 6 3.9767 5.0321 -0.0016 23 8 4.7918 5.1576 1.1654 24 14 2.6824 6.3721 -0.0016 25 6 1.9206 3.6034 0.0037 26 6 1.2924 2.3740 -0.0010 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 6.0357 0.9987 -0.0020 31 1 7.3432 -2.4260 -1.4969 32 1 6.5882 -0.9305 -2.2002 33 1 10.3792 -0.8060 -0.4435 34 1 9.5876 -2.1990 -1.2189 35 1 11.9830 0.2854 -2.0849 36 1 11.9763 0.8471 -4.6494 37 1 9.6967 -0.0720 -5.6855 38 1 7.8791 -0.0797 1.3029 39 1 8.2520 -1.8263 0.9727 40 1 5.1446 2.6038 -0.0019 41 1 4.5991 5.1276 -0.8914 42 1 4.3030 5.0828 1.9965 43 1 3.3334 7.7069 -0.0010 44 1 1.8079 6.2336 -1.1937 45 1 1.3303 4.5078 0.0079 46 1 0.2138 2.3194 -0.0014 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_12496546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:14 Heat of formation + Delta-G solvation = 42.075141 kcal Electronic energy + Delta-G solvation = -29716.320670 eV Core-core repulsion = 25576.202700 eV Total energy + Delta-G solvation = -4140.117970 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.10811 -41.83236 -40.80725 -39.25697 -39.17867 -37.12810 -35.11578 -33.70193 -32.39506 -31.81617 -30.94541 -28.73273 -28.38882 -26.73190 -26.17695 -25.55105 -24.12078 -22.70690 -21.92004 -21.71250 -21.52424 -20.35177 -19.49489 -18.46586 -18.23838 -18.04724 -17.23791 -16.92059 -16.81024 -16.46643 -16.15586 -16.03397 -15.88051 -15.81039 -15.60707 -15.12849 -14.87381 -14.71435 -14.56098 -14.51072 -14.32886 -13.73901 -13.65289 -13.60837 -13.41736 -13.39998 -13.15103 -12.81198 -12.45855 -12.20940 -12.11987 -12.07240 -11.81566 -11.68018 -11.58815 -11.25088 -11.07367 -10.42031 -10.35026 -10.31097 -10.05694 -9.48891 -9.31908 -4.99461 -0.31027 0.17812 1.01308 1.31797 1.63494 1.67418 1.72306 1.95207 1.98070 2.01667 2.23874 2.63569 3.32779 3.43746 3.45086 3.53196 3.63916 3.66147 3.72947 3.78534 3.95006 4.00859 4.08465 4.11482 4.21167 4.27905 4.34231 4.34681 4.36464 4.45159 4.52906 4.63614 4.66100 4.70780 4.72393 4.77769 4.81647 4.89225 4.91407 4.99827 5.03098 5.07207 5.13507 5.15699 5.23723 5.52432 5.54841 5.75189 6.19650 6.26565 6.44890 6.79204 6.79541 7.15126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.314 6.314 3 C 0.171 3.829 4 C -0.198 4.198 5 C 0.558 3.442 6 O -0.563 6.563 7 N -0.701 5.701 8 C 0.111 3.889 9 H 0.086 0.914 10 C -0.136 4.136 11 C -0.109 4.109 12 H 0.086 0.914 13 C 0.135 3.865 14 N -0.375 5.375 15 C 0.053 3.947 16 C -0.293 4.293 17 C 0.024 3.976 18 N -0.332 5.332 19 C -0.115 4.115 20 C -0.018 4.018 21 C -0.167 4.167 22 C -0.066 4.066 23 O -0.554 6.554 24 Si 0.774 3.226 25 C -0.042 4.042 26 C -0.211 4.211 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.409 0.591 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.132 0.868 34 H 0.089 0.911 35 H 0.207 0.793 36 H 0.160 0.840 37 H 0.192 0.808 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.146 0.854 41 H 0.109 0.891 42 H 0.396 0.604 43 H -0.301 1.301 44 H -0.283 1.283 45 H 0.159 0.841 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.690 4.649 5.104 6.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.123 3.877 4 C -0.202 4.202 5 C 0.347 3.653 6 O -0.443 6.443 7 N -0.353 5.353 8 C 0.005 3.995 9 H 0.104 0.896 10 C -0.175 4.175 11 C -0.128 4.128 12 H 0.104 0.896 13 C 0.015 3.985 14 N -0.158 5.158 15 C -0.093 4.093 16 C -0.323 4.323 17 C -0.161 4.161 18 N -0.154 5.154 19 C -0.153 4.153 20 C -0.036 4.036 21 C -0.168 4.168 22 C -0.176 4.176 23 O -0.362 6.362 24 Si 0.681 3.319 25 C -0.059 4.059 26 C -0.229 4.229 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.247 0.753 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.150 0.850 34 H 0.107 0.893 35 H 0.224 0.776 36 H 0.177 0.823 37 H 0.209 0.791 38 H 0.112 0.888 39 H 0.138 0.862 40 H 0.163 0.837 41 H 0.127 0.873 42 H 0.246 0.754 43 H -0.229 1.229 44 H -0.210 1.210 45 H 0.176 0.824 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.602 3.721 4.709 6.032 hybrid contribution 0.990 0.329 -1.122 1.532 sum 0.388 4.049 3.587 5.424 Atomic orbital electron populations 1.23459 0.76442 1.05506 1.02924 1.86340 1.23291 1.26384 1.86531 1.19413 0.91255 0.85646 0.91405 1.19398 0.91252 0.93866 1.15647 1.18331 0.82578 0.88729 0.75682 1.90806 1.72425 1.30321 1.50703 1.45480 1.05048 1.09830 1.74926 1.21904 0.92089 0.87821 0.97666 0.89600 1.23371 0.96776 1.00766 0.96569 1.22747 0.93069 0.99765 0.97187 0.89551 1.22068 0.97625 0.99869 0.78940 1.48996 1.14462 1.44237 1.08105 1.23206 0.91387 0.96404 0.98335 1.21856 1.01830 1.13647 0.94920 1.24302 0.94245 0.97728 0.99813 1.77342 1.20937 1.25268 0.91885 1.23288 0.92226 1.04664 0.95150 1.21057 1.00532 0.89310 0.92728 1.20263 0.93894 0.95952 1.06678 1.25078 1.02102 0.99081 0.91323 1.86468 1.38111 1.95315 1.16275 0.93820 0.77773 0.73898 0.86435 1.21292 0.93626 0.97947 0.93065 1.21489 1.01843 0.90819 1.08753 0.87466 0.90450 0.91042 0.75336 0.89089 0.93680 0.85020 0.89264 0.77597 0.82262 0.79143 0.88817 0.86195 0.83672 0.87330 0.75379 1.22867 1.21038 0.82386 0.81805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.11 16 2 O -0.31 -3.01 8.57 -68.84 -0.59 -3.60 16 3 C 0.17 1.09 6.70 22.84 0.15 1.25 16 4 C -0.20 -1.32 5.89 -20.01 -0.12 -1.44 16 5 C 0.56 6.00 7.76 86.70 0.67 6.67 16 6 O -0.56 -10.91 14.76 16.91 0.25 -10.66 16 7 N -0.70 -2.57 5.21 -443.21 -2.31 -4.88 16 8 C 0.11 0.28 4.32 45.52 0.20 0.48 16 9 H 0.09 0.60 7.46 -2.39 -0.02 0.58 16 10 C -0.14 -0.46 7.43 31.12 0.23 -0.23 16 11 C -0.11 0.27 3.70 -10.27 -0.04 0.24 16 12 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 13 C 0.13 -0.52 6.35 86.38 0.55 0.03 16 14 N -0.38 -1.05 3.68 -348.05 -1.28 -2.33 16 15 C 0.05 0.00 11.45 83.54 0.96 0.95 16 16 C -0.29 -0.76 10.80 21.99 0.24 -0.52 16 17 C 0.02 0.15 12.03 85.24 1.03 1.17 16 18 N -0.33 -3.00 12.42 -57.03 -0.71 -3.70 16 19 C -0.11 0.63 7.39 31.12 0.23 0.86 16 20 C -0.02 -0.01 9.09 22.52 0.20 0.19 16 21 C -0.17 0.32 5.39 -19.90 -0.11 0.21 16 22 C -0.07 0.23 2.81 71.24 0.20 0.43 16 23 O -0.55 1.81 12.76 -148.98 -1.90 -0.09 16 24 Si 0.77 -3.76 29.77 68.60 2.04 -1.72 16 25 C -0.04 0.14 8.66 22.30 0.19 0.34 16 26 C -0.21 0.17 9.03 22.34 0.20 0.37 16 27 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.08 -0.37 7.66 -2.39 -0.02 -0.39 16 29 H 0.07 -0.27 7.66 -2.39 -0.02 -0.29 16 30 H 0.41 -0.60 6.73 -92.71 -0.62 -1.23 16 31 H 0.09 0.30 7.90 -2.39 -0.02 0.28 16 32 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.13 -1.39 8.07 -2.39 -0.02 -1.41 16 34 H 0.09 -0.35 7.84 -2.38 -0.02 -0.37 16 35 H 0.21 -1.71 8.06 -2.91 -0.02 -1.74 16 36 H 0.16 -0.20 8.06 -2.91 -0.02 -0.23 16 37 H 0.19 0.31 8.06 -2.92 -0.02 0.28 16 38 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H 0.12 -1.06 8.10 -2.39 -0.02 -1.08 16 40 H 0.15 -0.38 6.40 -2.91 -0.02 -0.40 16 41 H 0.11 -0.25 7.96 -2.39 -0.02 -0.27 16 42 H 0.40 -4.36 8.70 -74.05 -0.64 -5.00 16 43 H -0.30 -0.98 7.11 99.48 0.71 -0.27 16 44 H -0.28 0.10 7.11 99.48 0.71 0.80 16 45 H 0.16 -1.40 4.85 -2.91 -0.01 -1.42 16 46 H 0.16 -1.02 6.30 -2.91 -0.02 -1.04 16 Total: 0.00 -29.85 382.37 1.20 -28.65 By element: Atomic # 1 Polarization: -13.59 SS G_CDS: -0.20 Total: -13.79 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 5.90 Total: 12.11 kcal Atomic # 7 Polarization: -6.61 SS G_CDS: -4.30 Total: -10.91 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -2.24 Total: -14.34 kcal Atomic # 14 Polarization: -3.76 SS G_CDS: 2.04 Total: -1.72 kcal Total: -29.85 1.20 -28.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_12496546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.728 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds