Wall clock time and date at job start Sun Mar 7 2021 04:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.47319 * 2 1 4 4 C 1.50702 * 109.47236 * 239.99556 * 2 1 3 5 5 C 1.38629 * 119.93704 * 74.97711 * 4 2 1 6 6 F 1.35106 * 119.88409 * 0.02562 * 5 4 2 7 7 C 1.38679 * 120.24075 * 179.97438 * 5 4 2 8 8 C 1.37824 * 120.11363 * 359.78776 * 7 5 4 9 9 C 1.39673 * 119.87850 * 0.49040 * 8 7 5 10 10 C 1.47720 * 120.11698 * 179.76244 * 9 8 7 11 11 O 1.21564 * 120.00433 * 179.72280 * 10 9 8 12 12 N 1.34776 * 119.99963 * 359.72716 * 10 9 8 13 13 C 1.46508 * 120.00098 * 179.97438 * 12 10 9 14 14 H 1.09000 * 112.84745 * 336.19733 * 13 12 10 15 15 C 1.53781 * 113.68939 * 107.46253 * 13 12 10 16 16 C 1.53776 * 87.08175 * 89.12540 * 15 13 12 17 17 H 1.09000 * 113.69626 * 270.87394 * 16 15 13 18 18 C 1.53006 * 113.61198 * 139.97780 * 16 15 13 19 19 N 1.46498 * 109.47010 * 87.51033 * 18 16 15 20 20 C 1.34941 * 126.03980 * 125.00325 * 19 18 16 21 21 C 1.35325 * 107.74555 * 180.02562 * 20 19 18 22 22 C 1.39868 * 107.91737 * 0.26206 * 21 20 19 23 23 N 1.30842 * 108.20327 * 359.55203 * 22 21 20 24 24 C 1.53781 * 113.61475 * 204.99758 * 13 12 10 25 25 C 1.37855 * 119.93901 * 255.00462 * 4 2 1 26 26 H 0.96694 * 113.99824 * 59.99906 * 1 2 3 27 27 H 1.09008 * 109.46781 * 119.99851 * 2 1 3 28 28 H 1.48498 * 109.99680 * 298.68042 * 3 2 1 29 29 H 1.48496 * 110.00015 * 59.99996 * 3 2 1 30 30 H 1.07990 * 119.94486 * 180.02562 * 7 5 4 31 31 H 1.08002 * 120.05904 * 180.24985 * 8 7 5 32 32 H 0.97003 * 120.00447 * 359.97438 * 12 10 9 33 33 H 1.09003 * 113.61303 * 334.57918 * 15 13 12 34 34 H 1.09002 * 113.61367 * 203.67582 * 15 13 12 35 35 H 1.08992 * 109.47371 * 327.50222 * 18 16 15 36 36 H 1.09010 * 109.46873 * 207.50310 * 18 16 15 37 37 H 1.07997 * 126.13283 * 0.03046 * 20 19 18 38 38 H 1.08002 * 126.03725 * 179.97438 * 21 20 19 39 39 H 1.08007 * 125.89524 * 179.73435 * 22 21 20 40 40 H 1.08991 * 113.61285 * 156.25004 * 24 13 12 41 41 H 1.09000 * 113.61189 * 25.34517 * 24 13 12 42 42 H 1.07995 * 120.06270 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.8684 -0.0838 -2.4654 6 9 1.3571 1.1630 -2.5622 7 6 2.3294 -0.7316 -3.6016 8 6 2.8570 -2.0014 -3.5076 9 6 2.9174 -2.6397 -2.2667 10 6 3.4770 -4.0027 -2.1608 11 8 3.5332 -4.5543 -1.0790 12 7 3.9253 -4.6347 -3.2635 13 6 4.4808 -5.9863 -3.1583 14 1 4.8586 -6.2122 -2.1612 15 6 3.5619 -7.0782 -3.7310 16 6 4.2543 -6.8415 -5.0834 17 1 3.7789 -6.0706 -5.6899 18 6 4.5280 -8.1279 -5.8653 19 7 3.3585 -8.4611 -6.6822 20 6 3.3545 -8.6682 -8.0156 21 6 2.0835 -8.9494 -8.3855 22 6 1.2825 -8.9070 -7.2397 23 7 2.0468 -8.6204 -6.2171 24 6 5.4675 -6.3361 -4.2848 25 6 2.4521 -1.9826 -1.1259 26 1 -0.3933 0.4417 -0.7650 27 1 1.7923 -0.5139 0.8901 28 1 1.5880 2.4585 -1.2242 29 1 1.5616 2.4679 1.2085 30 1 2.2784 -0.2388 -4.5612 31 1 3.2194 -2.5035 -4.3925 32 1 3.8802 -4.1947 -4.1268 33 1 2.5062 -6.8066 -3.7275 34 1 3.7467 -8.0679 -3.3131 35 1 4.7279 -8.9414 -5.1679 36 1 5.3935 -7.9829 -6.5120 37 1 4.2119 -8.6184 -8.6704 38 1 1.7464 -9.1638 -9.3889 39 1 0.2176 -9.0836 -7.2046 40 1 6.1732 -7.1227 -4.0183 41 1 5.9502 -5.4654 -4.7285 42 1 2.4999 -2.4702 -0.1635 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_12496548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:18 Heat of formation + Delta-G solvation = 40.535136 kcal Electronic energy + Delta-G solvation = -27385.500828 eV Core-core repulsion = 23250.081914 eV Total energy + Delta-G solvation = -4135.418914 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.50048 -42.06629 -41.59457 -40.32447 -39.17364 -37.83575 -35.20340 -33.70870 -32.77837 -31.85661 -30.91386 -28.55763 -27.03823 -26.69206 -25.43538 -23.89573 -23.56275 -21.89793 -21.73752 -21.56126 -20.36382 -19.31342 -18.92348 -18.18700 -17.91737 -17.90800 -17.19763 -16.99196 -16.47252 -16.26023 -16.11731 -15.76069 -15.64165 -15.39661 -15.06672 -14.91508 -14.82122 -14.67770 -14.40575 -14.06433 -13.87551 -13.70942 -13.58245 -13.39723 -13.36661 -13.01422 -12.78518 -12.38893 -12.18531 -11.65651 -11.56576 -11.37610 -11.25694 -11.21108 -10.89943 -10.32135 -10.24529 -10.14741 -9.85230 -9.46170 -4.98456 -0.56057 -0.01786 1.03824 1.17697 1.51835 1.57188 1.70772 1.91063 1.96545 1.97585 2.51234 2.93116 3.20216 3.35938 3.42049 3.48119 3.49977 3.56640 3.69967 3.80902 3.92330 4.04170 4.07381 4.11432 4.25181 4.28591 4.38015 4.49370 4.59328 4.68259 4.73112 4.76602 4.81064 4.84310 4.85546 4.94295 4.95851 5.02711 5.05969 5.07276 5.15117 5.18353 5.51689 5.57538 5.77591 6.22580 6.28463 6.38165 6.82010 7.06180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.085 4.085 3 Si 0.753 3.247 4 C -0.154 4.154 5 C 0.110 3.890 6 F -0.129 7.129 7 C -0.146 4.146 8 C -0.041 4.041 9 C -0.153 4.153 10 C 0.561 3.439 11 O -0.575 6.575 12 N -0.693 5.693 13 C 0.110 3.890 14 H 0.088 0.912 15 C -0.138 4.138 16 C -0.109 4.109 17 H 0.092 0.908 18 C 0.133 3.867 19 N -0.375 5.375 20 C 0.054 3.946 21 C -0.294 4.294 22 C 0.024 3.976 23 N -0.331 5.331 24 C -0.114 4.114 25 C -0.021 4.021 26 H 0.384 0.616 27 H 0.130 0.870 28 H -0.252 1.252 29 H -0.306 1.306 30 H 0.172 0.828 31 H 0.171 0.829 32 H 0.414 0.586 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.132 0.868 37 H 0.207 0.793 38 H 0.158 0.842 39 H 0.191 0.809 40 H 0.117 0.883 41 H 0.098 0.902 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.292 0.247 -8.523 11.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.193 4.193 3 Si 0.657 3.343 4 C -0.156 4.156 5 C 0.091 3.909 6 F -0.108 7.108 7 C -0.164 4.164 8 C -0.059 4.059 9 C -0.156 4.156 10 C 0.350 3.650 11 O -0.456 6.456 12 N -0.345 5.345 13 C 0.004 3.996 14 H 0.106 0.894 15 C -0.177 4.177 16 C -0.128 4.128 17 H 0.110 0.890 18 C 0.013 3.987 19 N -0.158 5.158 20 C -0.093 4.093 21 C -0.323 4.323 22 C -0.161 4.161 23 N -0.153 5.153 24 C -0.153 4.153 25 C -0.040 4.040 26 H 0.233 0.767 27 H 0.148 0.852 28 H -0.177 1.177 29 H -0.235 1.235 30 H 0.190 0.810 31 H 0.189 0.811 32 H 0.253 0.747 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.150 0.850 37 H 0.224 0.776 38 H 0.176 0.824 39 H 0.208 0.792 40 H 0.135 0.865 41 H 0.117 0.883 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.385 0.631 -5.895 9.470 hybrid contribution -1.855 -0.093 -1.367 2.306 sum 5.530 0.538 -7.262 9.143 Atomic orbital electron populations 1.86625 1.18175 1.80309 1.50046 1.25209 0.83581 1.12331 0.98213 0.94609 0.90196 0.72487 0.77045 1.20151 1.04493 0.96291 0.94630 1.18102 0.97604 0.80383 0.94852 1.91561 1.84660 1.38118 1.96434 1.21399 1.00512 0.95894 0.98644 1.21480 0.94181 0.93448 0.96785 1.19969 1.05575 0.94688 0.95391 1.18374 0.77062 0.85584 0.83987 1.90797 1.57351 1.68381 1.29027 1.45443 1.62252 1.16548 1.10228 1.21938 0.95659 0.81287 1.00683 0.89359 1.23385 0.98783 0.99166 0.96381 1.22785 0.98241 0.96844 0.94978 0.88999 1.22086 0.84090 0.97370 0.95119 1.49003 1.07006 1.53449 1.06302 1.23189 1.00701 0.99785 0.85603 1.21852 0.93162 1.16452 1.00842 1.24295 1.01125 0.99678 0.91034 1.77343 0.89136 1.24510 1.24327 1.23287 0.95419 1.02984 0.93590 1.21022 0.92161 0.91627 0.99218 0.76742 0.85249 1.17681 1.23482 0.81024 0.81138 0.74725 0.93406 0.89320 0.89509 0.85037 0.77617 0.82389 0.79242 0.86467 0.88346 0.84272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -3.02 12.88 -148.98 -1.92 -4.93 16 2 C -0.09 -0.16 2.80 71.24 0.20 0.04 16 3 Si 0.75 0.48 30.81 68.60 2.11 2.59 16 4 C -0.15 -0.17 4.78 -19.86 -0.09 -0.26 16 5 C 0.11 -0.07 6.63 22.47 0.15 0.08 16 6 F -0.13 -0.20 12.57 44.97 0.57 0.36 16 7 C -0.15 0.77 10.01 22.28 0.22 0.99 16 8 C -0.04 0.25 9.54 22.52 0.21 0.46 16 9 C -0.15 -0.05 5.87 -20.09 -0.12 -0.16 16 10 C 0.56 2.20 7.77 86.75 0.67 2.87 16 11 O -0.58 -7.48 15.94 -3.92 -0.06 -7.54 16 12 N -0.69 2.02 5.22 -443.02 -2.31 -0.29 16 13 C 0.11 -0.27 4.32 45.52 0.20 -0.08 16 14 H 0.09 0.18 7.46 -2.39 -0.02 0.16 16 15 C -0.14 0.09 7.43 31.12 0.23 0.32 16 16 C -0.11 0.73 3.71 -10.27 -0.04 0.69 16 17 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 18 C 0.13 -0.90 6.35 86.38 0.55 -0.35 16 19 N -0.37 -0.08 3.68 -348.05 -1.28 -1.36 16 20 C 0.05 -0.12 11.45 83.54 0.96 0.83 16 21 C -0.29 -0.19 10.80 21.99 0.24 0.05 16 22 C 0.02 0.10 12.03 85.23 1.02 1.12 16 23 N -0.33 -2.18 12.42 -57.02 -0.71 -2.89 16 24 C -0.11 1.14 7.39 31.12 0.23 1.37 16 25 C -0.02 -0.05 9.21 22.52 0.21 0.15 16 26 H 0.38 0.15 8.41 -74.06 -0.62 -0.47 16 27 H 0.13 0.03 7.77 -2.38 -0.02 0.01 16 28 H -0.25 -0.97 5.27 99.48 0.52 -0.44 16 29 H -0.31 -2.56 7.11 99.48 0.71 -1.85 16 30 H 0.17 -1.76 8.06 -2.92 -0.02 -1.79 16 31 H 0.17 -2.32 6.40 -2.91 -0.02 -2.33 16 32 H 0.41 -3.90 6.73 -92.71 -0.62 -4.53 16 33 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.09 0.01 7.90 -2.39 -0.02 -0.01 16 35 H 0.09 -0.55 7.84 -2.39 -0.02 -0.57 16 36 H 0.13 -1.77 8.07 -2.38 -0.02 -1.79 16 37 H 0.21 -2.16 8.06 -2.91 -0.02 -2.18 16 38 H 0.16 -0.46 8.06 -2.91 -0.02 -0.48 16 39 H 0.19 -0.02 8.06 -2.91 -0.02 -0.05 16 40 H 0.12 -1.45 8.10 -2.39 -0.02 -1.46 16 41 H 0.10 -1.26 8.14 -2.39 -0.02 -1.28 16 42 H 0.14 0.58 7.58 -2.91 -0.02 0.56 16 Total: 0.00 -25.67 358.89 0.92 -24.75 By element: Atomic # 1 Polarization: -18.50 SS G_CDS: -0.32 Total: -18.82 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 4.84 Total: 8.13 kcal Atomic # 7 Polarization: -0.24 SS G_CDS: -4.30 Total: -4.54 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -1.98 Total: -12.47 kcal Atomic # 9 Polarization: -0.20 SS G_CDS: 0.57 Total: 0.36 kcal Atomic # 14 Polarization: 0.48 SS G_CDS: 2.11 Total: 2.59 kcal Total: -25.67 0.92 -24.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_12496548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.282 kcal (2) G-P(sol) polarization free energy of solvation -25.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds