Wall clock time and date at job start Sun Mar 7 2021 04:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.35086 * 126.07494 * 255.02064 * 4 2 1 6 6 N 1.35031 * 107.97996 * 180.02562 * 5 4 2 7 7 C 1.46499 * 125.93215 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47219 * 125.00242 * 7 6 5 9 9 O 1.21287 * 119.99829 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00096 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00132 * 180.02562 * 10 8 7 12 12 H 1.08999 * 112.84454 * 334.65618 * 11 10 8 13 13 C 1.53775 * 113.61721 * 105.85521 * 11 10 8 14 14 C 1.54051 * 86.98321 * 89.16370 * 13 11 10 15 15 H 1.08999 * 113.61531 * 270.88338 * 14 13 11 16 16 C 1.53002 * 113.69920 * 139.98779 * 14 13 11 17 17 N 1.46501 * 109.47166 * 87.46363 * 16 14 13 18 18 C 1.34950 * 126.03602 * 124.71708 * 17 16 14 19 19 C 1.35323 * 107.74383 * 179.84479 * 18 17 16 20 20 C 1.39872 * 107.92053 * 0.42300 * 19 18 17 21 21 N 1.30841 * 108.20019 * 359.73740 * 20 19 18 22 22 C 1.53782 * 87.07908 * 25.43320 * 14 13 11 23 23 N 1.40076 * 108.13697 * 0.02562 * 6 5 4 24 24 C 1.31612 * 108.10900 * 359.71663 * 23 6 5 25 25 C 1.48425 * 126.04151 * 180.29770 * 24 23 6 26 26 C 1.39322 * 120.12055 * 144.88817 * 25 24 23 27 27 C 1.38027 * 119.87626 * 179.74589 * 26 25 24 28 28 C 1.38328 * 120.11537 * 0.55574 * 27 26 25 29 29 C 1.38316 * 120.24329 * 359.69760 * 28 27 26 30 30 C 1.38018 * 120.11955 * 0.02562 * 29 28 27 31 31 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 32 32 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 33 33 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 34 34 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 35 35 H 1.08003 * 126.00768 * 359.96978 * 5 4 2 36 36 H 1.08996 * 109.47390 * 245.00425 * 7 6 5 37 37 H 1.09005 * 109.46885 * 5.00523 * 7 6 5 38 38 H 0.96997 * 120.00390 * 359.97438 * 10 8 7 39 39 H 1.09000 * 113.61500 * 203.65904 * 13 11 10 40 40 H 1.08994 * 113.61538 * 334.57184 * 13 11 10 41 41 H 1.08999 * 109.47449 * 207.46847 * 16 14 13 42 42 H 1.08997 * 109.47041 * 327.46749 * 16 14 13 43 43 H 1.08000 * 126.12811 * 359.97438 * 18 17 16 44 44 H 1.07996 * 126.03767 * 180.16322 * 19 18 17 45 45 H 1.07995 * 125.89657 * 179.71449 * 20 19 18 46 46 H 1.09003 * 113.61096 * 220.02375 * 22 14 13 47 47 H 1.08998 * 113.61706 * 89.12146 * 22 14 13 48 48 H 1.07994 * 120.06250 * 0.02562 * 26 25 24 49 49 H 1.07993 * 119.94245 * 180.27864 * 27 26 25 50 50 H 1.08004 * 119.87336 * 179.72232 * 28 27 26 51 51 H 1.08003 * 119.93628 * 180.02562 * 29 28 27 52 52 H 1.08008 * 120.06018 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.4624 -0.1249 2.3260 6 7 2.7884 -1.0989 3.2026 7 6 3.3929 -0.9008 4.5222 8 6 2.5393 -1.5663 5.5708 9 8 1.5255 -2.1485 5.2476 10 7 2.9019 -1.5138 6.8678 11 6 2.0724 -2.1613 7.8871 12 1 1.0294 -2.2574 7.5855 13 6 2.6771 -3.4637 8.4373 14 6 3.3868 -2.5931 9.4916 15 1 4.3634 -2.2295 9.1720 16 6 3.4135 -3.2178 10.8880 17 7 4.5901 -4.0815 11.0143 18 6 5.5411 -3.9932 11.9676 19 6 6.4492 -4.9694 11.7359 20 6 6.0441 -5.6724 10.5966 21 7 4.9298 -5.1410 10.1632 22 6 2.2545 -1.5713 9.2955 23 7 2.4482 -2.3317 2.6310 24 6 1.9259 -2.1024 1.4449 25 6 1.4229 -3.1296 0.4989 26 6 0.3154 -2.8596 -0.3022 27 6 -0.1449 -3.8165 -1.1840 28 6 0.4841 -5.0459 -1.2648 29 6 1.5807 -5.3210 -0.4679 30 6 2.0529 -4.3693 0.4131 31 1 -0.3934 0.4418 0.7650 32 1 1.7924 -0.5139 -0.8899 33 1 1.5616 2.4678 -1.2086 34 1 1.5878 2.4586 1.2241 35 1 2.6025 0.9357 2.4742 36 1 4.3908 -1.3389 4.5343 37 1 3.4620 0.1664 4.7337 38 1 3.7124 -1.0480 7.1264 39 1 1.9377 -4.1444 8.8593 40 1 3.3594 -3.9554 7.7440 41 1 3.4599 -2.4285 11.6384 42 1 2.5106 -3.8096 11.0386 43 1 5.5710 -3.2737 12.7725 44 1 7.3329 -5.1677 12.3241 45 1 6.5619 -6.5090 10.1513 46 1 2.5959 -0.5361 9.2945 47 1 1.3997 -1.7354 9.9516 48 1 -0.1791 -1.9018 -0.2367 49 1 -1.0005 -3.6068 -1.8087 50 1 0.1178 -5.7934 -1.9529 51 1 2.0683 -6.2823 -0.5354 52 1 2.9095 -4.5850 1.0346 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_12622748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:22 Heat of formation + Delta-G solvation = 160.551776 kcal Electronic energy + Delta-G solvation = -35460.059079 eV Core-core repulsion = 30817.155352 eV Total energy + Delta-G solvation = -4642.903727 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.179 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.52884 -42.06379 -41.23204 -39.87550 -39.41610 -37.89401 -35.15213 -34.79267 -33.50215 -32.31542 -31.88075 -31.43581 -30.95421 -29.16602 -28.17937 -26.74844 -26.00662 -24.63363 -23.87480 -23.49762 -22.17564 -21.91058 -21.62823 -21.48755 -20.99448 -20.36871 -18.80397 -18.54562 -18.08294 -17.80950 -17.34245 -16.89379 -16.72654 -16.49491 -16.28964 -16.05417 -15.90631 -15.74426 -15.42522 -15.42495 -15.10358 -14.88423 -14.80263 -14.52189 -14.39468 -14.26741 -14.18665 -13.85117 -13.72584 -13.64906 -13.59617 -13.43559 -13.28888 -12.82611 -12.55229 -12.40176 -12.23411 -12.15558 -11.71919 -11.70501 -11.62137 -11.58838 -11.34588 -11.26330 -10.69778 -10.41123 -10.34648 -10.17861 -9.88675 -9.77951 -9.48692 -9.30810 -4.83808 0.05847 0.46270 0.79476 1.01396 1.27111 1.40311 1.42006 1.65096 1.67711 1.69871 1.95487 2.02297 2.04778 2.88968 3.29858 3.34146 3.43799 3.45370 3.53351 3.65584 3.67634 3.75335 3.90191 4.00468 4.01778 4.08611 4.09161 4.11780 4.16710 4.21028 4.32562 4.34442 4.44026 4.44676 4.51373 4.59987 4.63310 4.70573 4.77414 4.78652 4.79640 4.86434 4.91805 4.98286 4.98946 5.01639 5.10939 5.16256 5.16378 5.30046 5.50003 5.56017 5.60553 5.63031 5.75241 5.89404 6.04670 6.20004 6.39124 6.56516 6.60255 6.79672 7.10230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.052 4.052 3 Si 0.785 3.215 4 C -0.261 4.261 5 C 0.075 3.925 6 N -0.359 5.359 7 C 0.111 3.889 8 C 0.496 3.504 9 O -0.566 6.566 10 N -0.695 5.695 11 C 0.113 3.887 12 H 0.076 0.924 13 C -0.139 4.139 14 C -0.106 4.106 15 H 0.094 0.906 16 C 0.133 3.867 17 N -0.375 5.375 18 C 0.054 3.946 19 C -0.293 4.293 20 C 0.024 3.976 21 N -0.333 5.333 22 C -0.112 4.112 23 N -0.297 5.297 24 C 0.110 3.890 25 C -0.038 4.038 26 C -0.112 4.112 27 C -0.131 4.131 28 C -0.116 4.116 29 C -0.131 4.131 30 C -0.110 4.110 31 H 0.383 0.617 32 H 0.105 0.895 33 H -0.305 1.305 34 H -0.261 1.261 35 H 0.220 0.780 36 H 0.141 0.859 37 H 0.182 0.818 38 H 0.420 0.580 39 H 0.082 0.918 40 H 0.045 0.955 41 H 0.133 0.867 42 H 0.084 0.916 43 H 0.208 0.792 44 H 0.160 0.840 45 H 0.191 0.809 46 H 0.102 0.898 47 H 0.113 0.887 48 H 0.153 0.847 49 H 0.141 0.859 50 H 0.146 0.854 51 H 0.142 0.858 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.131 8.787 6.611 12.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.160 4.160 3 Si 0.688 3.312 4 C -0.273 4.273 5 C -0.070 4.070 6 N -0.141 5.141 7 C -0.013 4.013 8 C 0.282 3.718 9 O -0.443 6.443 10 N -0.348 5.348 11 C 0.007 3.993 12 H 0.094 0.906 13 C -0.178 4.178 14 C -0.125 4.125 15 H 0.113 0.887 16 C 0.013 3.987 17 N -0.158 5.158 18 C -0.092 4.092 19 C -0.322 4.322 20 C -0.161 4.161 21 N -0.155 5.155 22 C -0.151 4.151 23 N -0.118 5.118 24 C -0.055 4.055 25 C -0.040 4.040 26 C -0.131 4.131 27 C -0.149 4.149 28 C -0.134 4.134 29 C -0.149 4.149 30 C -0.129 4.129 31 H 0.233 0.767 32 H 0.123 0.877 33 H -0.233 1.233 34 H -0.187 1.187 35 H 0.237 0.763 36 H 0.158 0.842 37 H 0.199 0.801 38 H 0.258 0.742 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.151 0.849 42 H 0.102 0.898 43 H 0.225 0.775 44 H 0.177 0.823 45 H 0.208 0.792 46 H 0.120 0.880 47 H 0.131 0.869 48 H 0.170 0.830 49 H 0.159 0.841 50 H 0.164 0.836 51 H 0.160 0.840 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.655 8.092 6.004 11.099 hybrid contribution -0.355 -0.305 0.615 0.773 sum 4.300 7.787 6.619 11.087 Atomic orbital electron populations 1.86451 1.19156 1.79735 1.50094 1.24650 0.82789 1.12296 0.96307 0.94026 0.89742 0.70089 0.77374 1.20570 1.14079 0.92226 1.00418 1.22861 0.98264 0.96730 0.89131 1.48116 1.48142 1.03650 1.14186 1.21983 0.96762 1.06423 0.76087 1.21170 0.86023 0.80301 0.84344 1.90829 1.27919 1.44097 1.81495 1.45428 1.28321 1.56073 1.05025 1.21826 0.94843 0.93981 0.88603 0.90552 1.23406 0.99568 0.96531 0.98320 1.22808 0.99313 0.96786 0.93557 0.88729 1.22072 0.84886 0.92500 0.99223 1.48994 1.20517 1.25123 1.21179 1.23206 0.89698 1.01016 0.95327 1.21857 1.05483 1.01885 1.02971 1.24302 0.94244 1.00833 0.96708 1.77354 1.17666 1.02870 1.17623 1.23254 0.98662 0.99622 0.93523 1.77707 1.20576 1.04337 1.09179 1.20867 0.98603 0.93773 0.92258 1.18050 0.97078 0.92552 0.96281 1.22005 0.95098 1.01424 0.94588 1.21420 1.00790 0.93680 0.98994 1.21593 0.95399 0.97421 0.99037 1.21349 0.97475 0.99769 0.96285 1.21314 1.00051 0.92921 0.98655 0.76690 0.87698 1.23280 1.18680 0.76334 0.84157 0.80068 0.74211 0.89995 0.93631 0.84895 0.89812 0.77534 0.82276 0.79225 0.87980 0.86903 0.83010 0.84073 0.83624 0.84036 0.86576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.21 10.08 -148.98 -1.50 -3.71 16 2 C -0.05 -0.10 2.01 71.24 0.14 0.05 16 3 Si 0.79 -2.89 30.81 68.60 2.11 -0.78 16 4 C -0.26 -1.25 5.34 -19.95 -0.11 -1.35 16 5 C 0.08 -0.04 9.96 83.47 0.83 0.79 16 6 N -0.36 -1.32 3.40 -351.91 -1.20 -2.52 16 7 C 0.11 -0.62 6.99 85.63 0.60 -0.02 16 8 C 0.50 1.20 7.86 87.66 0.69 1.89 16 9 O -0.57 -8.80 15.32 -3.05 -0.05 -8.84 16 10 N -0.69 2.95 5.26 -440.04 -2.32 0.63 16 11 C 0.11 -0.17 4.29 45.52 0.20 0.02 16 12 H 0.08 0.35 7.50 -2.39 -0.02 0.33 16 13 C -0.14 -0.14 7.45 31.21 0.23 0.09 16 14 C -0.11 0.63 3.71 -10.17 -0.04 0.59 16 15 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 16 C 0.13 -0.78 6.35 86.38 0.55 -0.23 16 17 N -0.38 -0.35 3.68 -348.05 -1.28 -1.63 16 18 C 0.05 -0.10 11.45 83.54 0.96 0.85 16 19 C -0.29 -0.30 10.80 21.99 0.24 -0.06 16 20 C 0.02 0.11 12.03 85.24 1.03 1.14 16 21 N -0.33 -2.50 12.42 -57.02 -0.71 -3.20 16 22 C -0.11 1.05 7.38 31.12 0.23 1.28 16 23 N -0.30 -3.99 11.63 -48.16 -0.56 -4.55 16 24 C 0.11 1.33 6.74 42.53 0.29 1.62 16 25 C -0.04 -0.48 5.80 -20.04 -0.12 -0.60 16 26 C -0.11 -1.21 8.95 22.48 0.20 -1.00 16 27 C -0.13 -0.99 10.04 22.24 0.22 -0.77 16 28 C -0.12 -0.72 10.04 22.31 0.22 -0.49 16 29 C -0.13 -1.02 10.03 22.24 0.22 -0.80 16 30 C -0.11 -1.29 9.75 22.48 0.22 -1.07 16 31 H 0.38 -0.51 8.70 -74.06 -0.64 -1.16 16 32 H 0.11 0.34 7.86 -2.39 -0.02 0.32 16 33 H -0.30 -1.42 7.11 99.48 0.71 -0.71 16 34 H -0.26 0.89 6.99 99.48 0.70 1.58 16 35 H 0.22 -2.24 6.33 -2.91 -0.02 -2.25 16 36 H 0.14 -1.37 8.14 -2.39 -0.02 -1.39 16 37 H 0.18 -3.04 8.07 -2.38 -0.02 -3.06 16 38 H 0.42 -5.04 8.70 -92.71 -0.81 -5.85 16 39 H 0.08 0.22 7.91 -2.39 -0.02 0.20 16 40 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.13 -1.71 8.07 -2.39 -0.02 -1.73 16 42 H 0.08 -0.41 7.85 -2.39 -0.02 -0.43 16 43 H 0.21 -2.11 8.06 -2.91 -0.02 -2.14 16 44 H 0.16 -0.43 8.06 -2.91 -0.02 -0.45 16 45 H 0.19 0.09 8.06 -2.91 -0.02 0.07 16 46 H 0.10 -1.33 8.14 -2.39 -0.02 -1.35 16 47 H 0.11 -1.25 8.10 -2.39 -0.02 -1.27 16 48 H 0.15 1.55 4.50 -2.91 -0.01 1.54 16 49 H 0.14 0.45 8.06 -2.91 -0.02 0.43 16 50 H 0.15 0.11 8.06 -2.91 -0.02 0.09 16 51 H 0.14 0.44 8.06 -2.91 -0.02 0.42 16 52 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 Total: 0.00 -39.20 436.23 0.85 -38.34 By element: Atomic # 1 Polarization: -15.20 SS G_CDS: -0.45 Total: -15.65 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 6.80 Total: 1.91 kcal Atomic # 7 Polarization: -5.20 SS G_CDS: -6.06 Total: -11.26 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: -1.55 Total: -12.56 kcal Atomic # 14 Polarization: -2.89 SS G_CDS: 2.11 Total: -0.78 kcal Total: -39.20 0.85 -38.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_12622748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.894 kcal (2) G-P(sol) polarization free energy of solvation -39.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds