Wall clock time and date at job start Sun Mar 7 2021 04:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.46668 * 2 1 4 4 C 1.50703 * 109.47270 * 119.99792 * 2 1 3 5 5 C 1.34832 * 125.65080 * 65.27787 * 4 2 1 6 6 C 1.40795 * 107.04964 * 180.14040 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.60553 * 6 5 4 8 8 C 1.47569 * 125.94733 * 180.24168 * 7 6 5 9 9 C 1.39563 * 119.95441 * 179.72557 * 8 7 6 10 10 C 1.38327 * 119.80855 * 179.72634 * 9 8 7 11 11 O 1.35679 * 120.13412 * 180.25063 * 10 9 8 12 12 C 1.40365 * 119.72357 * 0.52645 * 10 9 8 13 13 C 1.47293 * 120.04235 * 179.72549 * 12 10 9 14 14 O 1.21628 * 120.00434 * 0.02562 * 13 12 10 15 15 N 1.34781 * 119.99895 * 180.02562 * 13 12 10 16 16 C 1.46499 * 120.00040 * 180.02562 * 15 13 12 17 17 H 1.09003 * 112.85285 * 23.79950 * 16 15 13 18 18 C 1.53780 * 113.61399 * 154.99618 * 16 15 13 19 19 C 1.53780 * 87.07822 * 89.11766 * 18 16 15 20 20 H 1.09002 * 113.61259 * 270.87839 * 19 18 16 21 21 C 1.53005 * 113.61628 * 140.06747 * 19 18 16 22 22 N 1.46500 * 109.47450 * 174.99874 * 21 19 18 23 23 C 1.34941 * 126.03788 * 124.99669 * 22 21 19 24 24 C 1.35319 * 107.74706 * 179.97438 * 23 22 21 25 25 C 1.39868 * 107.91491 * 359.97438 * 24 23 22 26 26 N 1.30832 * 108.20770 * 359.74373 * 25 24 23 27 27 C 1.53776 * 87.08393 * 25.43325 * 19 18 16 28 28 C 1.39916 * 119.91036 * 359.74834 * 12 10 9 29 29 C 1.36384 * 120.18427 * 359.97438 * 28 12 10 30 30 O 1.34226 * 125.65142 * 244.97755 * 4 2 1 31 31 H 0.96702 * 114.00045 * 299.99625 * 1 2 3 32 32 H 1.08995 * 109.47274 * 240.00498 * 2 1 3 33 33 H 1.48501 * 109.99680 * 178.68070 * 3 2 1 34 34 H 1.48500 * 110.00258 * 299.99759 * 3 2 1 35 35 H 1.08005 * 126.47494 * 0.02562 * 5 4 2 36 36 H 1.08002 * 126.63743 * 179.87482 * 6 5 4 37 37 H 1.08001 * 120.09577 * 359.97438 * 9 8 7 38 38 H 0.96699 * 113.99887 * 270.27898 * 11 10 9 39 39 H 0.96996 * 120.00007 * 359.97438 * 15 13 12 40 40 H 1.09004 * 113.61389 * 203.66453 * 18 16 15 41 41 H 1.08999 * 113.61788 * 334.48580 * 18 16 15 42 42 H 1.09001 * 109.46631 * 294.99572 * 21 19 18 43 43 H 1.09005 * 109.47068 * 54.99317 * 21 19 18 44 44 H 1.07999 * 126.12677 * 0.02562 * 23 22 21 45 45 H 1.07999 * 126.04529 * 180.02562 * 24 23 22 46 46 H 1.08010 * 125.89391 * 180.02562 * 25 24 23 47 47 H 1.09003 * 113.61427 * 220.02415 * 27 19 18 48 48 H 1.08996 * 113.61984 * 89.11692 * 27 19 18 49 49 H 1.07994 * 119.90697 * 179.97438 * 28 12 10 50 50 H 1.08003 * 119.86323 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7613 -2.0191 1.5069 6 6 2.3804 -2.2628 2.7477 7 6 2.9081 -1.0784 3.1617 8 6 3.6576 -0.8541 4.4130 9 6 4.1502 0.4170 4.7119 10 6 4.8474 0.6251 5.8884 11 8 5.3248 1.8592 6.1880 12 6 5.0639 -0.4471 6.7680 13 6 5.8106 -0.2348 8.0198 14 8 6.2397 0.8702 8.2920 15 7 6.0184 -1.2650 8.8636 16 6 6.7606 -1.0538 10.1088 17 1 6.7339 -0.0179 10.4470 18 6 6.4175 -2.0704 11.2105 19 6 7.5346 -2.9552 10.6324 20 1 7.1939 -3.6323 9.8490 21 6 8.3749 -3.6577 11.7008 22 7 9.3281 -4.5635 11.0549 23 6 10.6664 -4.5620 11.2273 24 6 11.1825 -5.5484 10.4580 25 6 10.1230 -6.1745 9.7932 26 7 9.0104 -5.5887 10.1547 27 6 8.1724 -1.6631 10.0955 28 6 4.5698 -1.7179 6.4540 29 6 3.8780 -1.9177 5.2957 30 8 2.6271 -0.1463 2.2302 31 1 -0.3933 0.4417 0.7651 32 1 1.7923 -0.5137 -0.8900 33 1 3.5345 1.7704 0.0321 34 1 1.5614 2.4680 -1.2085 35 1 1.2459 -2.7432 0.8933 36 1 2.4310 -3.2078 3.2682 37 1 3.9841 1.2367 4.0286 38 1 6.2179 2.0265 5.8570 39 1 5.6759 -2.1462 8.6467 40 1 6.6241 -1.7089 12.2179 41 1 5.4215 -2.5020 11.1116 42 1 8.9182 -2.9134 12.2830 43 1 7.7209 -4.2283 12.3603 44 1 11.2255 -3.8938 11.8656 45 1 12.2276 -5.8072 10.3730 46 1 10.2083 -7.0019 9.1042 47 1 8.5937 -1.7669 9.0955 48 1 8.8587 -1.1902 10.7979 49 1 4.7367 -2.5429 7.1306 50 1 3.4986 -2.9007 5.0587 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688104_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:34 Heat of formation + Delta-G solvation = 55.642216 kcal Electronic energy + Delta-G solvation = -35221.921149 eV Core-core repulsion = 30379.030878 eV Total energy + Delta-G solvation = -4842.890271 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.156 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.76305 -42.12048 -41.66022 -40.57181 -38.99112 -38.11707 -37.82597 -35.11807 -34.29205 -33.84613 -32.93190 -31.33952 -30.99204 -30.49974 -28.62955 -27.07939 -26.89940 -24.90820 -24.17943 -23.95669 -22.55921 -22.16109 -21.94718 -21.62779 -21.39571 -20.27144 -19.69755 -18.90581 -18.55487 -18.19241 -17.69542 -17.50303 -17.29576 -16.75042 -16.58674 -16.40400 -16.18522 -15.93721 -15.79441 -15.74062 -15.42877 -15.22948 -14.84414 -14.61889 -14.41624 -14.30570 -14.20901 -14.05248 -13.96859 -13.90377 -13.69262 -13.63498 -13.58958 -13.50433 -12.89009 -12.88497 -12.77197 -12.35054 -12.13543 -11.88484 -11.72878 -11.58072 -11.43978 -11.15591 -10.83153 -10.75852 -10.61528 -10.30596 -10.12704 -9.99309 -9.47404 -9.04622 -5.08203 -0.81785 0.08072 0.62996 1.00160 1.08932 1.37734 1.43232 1.56748 1.72431 1.88275 1.94241 1.97257 1.98441 2.59900 2.98462 3.19495 3.24165 3.32291 3.33993 3.38629 3.50150 3.58460 3.67785 3.82364 3.85436 3.88189 3.91780 3.94188 4.03717 4.12585 4.23981 4.28054 4.33888 4.34760 4.50739 4.52194 4.53377 4.63673 4.64259 4.68687 4.75314 4.81011 4.86487 4.86829 4.91825 4.97091 5.03278 5.06104 5.13948 5.14680 5.35350 5.42293 5.48364 5.76042 5.93472 6.09288 6.34103 6.39385 6.65693 6.80636 7.17334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.028 4.028 3 Si 0.700 3.300 4 C -0.045 4.045 5 C -0.174 4.174 6 C -0.177 4.177 7 C 0.023 3.977 8 C 0.031 3.969 9 C -0.141 4.141 10 C 0.180 3.820 11 O -0.474 6.474 12 C -0.166 4.166 13 C 0.562 3.438 14 O -0.515 6.515 15 N -0.712 5.712 16 C 0.124 3.876 17 H 0.108 0.892 18 C -0.138 4.138 19 C -0.123 4.123 20 H 0.104 0.896 21 C 0.142 3.858 22 N -0.370 5.370 23 C 0.053 3.947 24 C -0.275 4.275 25 C 0.044 3.956 26 N -0.297 5.297 27 C -0.146 4.146 28 C -0.064 4.064 29 C -0.116 4.116 30 O -0.161 6.161 31 H 0.384 0.616 32 H 0.134 0.866 33 H -0.253 1.253 34 H -0.245 1.245 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.145 0.855 38 H 0.399 0.601 39 H 0.400 0.600 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.172 0.828 45 H 0.147 0.853 46 H 0.182 0.818 47 H 0.072 0.928 48 H 0.093 0.907 49 H 0.136 0.864 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 -2.146 2.377 3.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.139 4.139 3 Si 0.600 3.400 4 C -0.095 4.095 5 C -0.193 4.193 6 C -0.196 4.196 7 C -0.027 4.027 8 C 0.031 3.969 9 C -0.159 4.159 10 C 0.133 3.867 11 O -0.285 6.285 12 C -0.170 4.170 13 C 0.350 3.650 14 O -0.391 6.391 15 N -0.364 5.364 16 C 0.018 3.982 17 H 0.126 0.874 18 C -0.176 4.176 19 C -0.142 4.142 20 H 0.122 0.878 21 C 0.021 3.979 22 N -0.152 5.152 23 C -0.094 4.094 24 C -0.305 4.305 25 C -0.142 4.142 26 N -0.119 5.119 27 C -0.185 4.185 28 C -0.082 4.082 29 C -0.134 4.134 30 O -0.058 6.058 31 H 0.232 0.768 32 H 0.151 0.849 33 H -0.177 1.177 34 H -0.169 1.169 35 H 0.173 0.827 36 H 0.174 0.826 37 H 0.162 0.838 38 H 0.258 0.742 39 H 0.236 0.764 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.189 0.811 45 H 0.164 0.836 46 H 0.199 0.801 47 H 0.091 0.909 48 H 0.111 0.889 49 H 0.153 0.847 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.476 -0.519 1.834 1.965 hybrid contribution 1.302 -1.554 -0.308 2.051 sum 0.826 -2.074 1.526 2.704 Atomic orbital electron populations 1.86565 1.16080 1.81744 1.49172 1.24423 0.85266 1.11290 0.92872 0.94212 0.81620 0.76895 0.87278 1.23003 1.00516 0.93864 0.92143 1.21586 1.04059 0.95668 0.97985 1.21916 1.01964 0.98398 0.97291 1.20318 1.03836 0.87536 0.91031 1.17755 0.95440 0.93746 0.89979 1.21598 1.00321 0.97120 0.96893 1.18279 0.93862 0.84074 0.90508 1.84773 1.36327 1.27549 1.79875 1.20457 1.04748 0.94363 0.97400 1.17969 0.79490 0.84375 0.83173 1.90848 1.49879 1.23440 1.74953 1.45577 1.57302 1.12260 1.21267 1.21766 0.91663 1.00698 0.84071 0.87370 1.23356 0.99069 0.96146 0.99065 1.22975 0.96627 0.96068 0.98577 0.87761 1.21791 0.90892 0.90924 0.94279 1.48709 1.05245 1.26177 1.35081 1.22594 0.84719 1.00720 1.01338 1.21556 1.00763 1.02267 1.05905 1.23915 0.90092 1.00143 1.00075 1.77306 1.23735 1.02013 1.08802 1.23520 0.96888 0.95559 1.02492 1.20812 0.95483 0.95462 0.96476 1.20706 1.00194 0.98764 0.93732 1.83936 1.57562 1.37871 1.26463 0.76774 0.84894 1.17688 1.16947 0.82689 0.82609 0.83753 0.74249 0.76443 0.88080 0.90138 0.88378 0.89504 0.81065 0.83569 0.80106 0.90929 0.88886 0.84669 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.26 12.88 -35.23 -0.45 -0.20 16 2 C -0.03 0.02 2.98 36.01 0.11 0.13 16 3 Si 0.70 -0.63 32.11 -169.99 -5.46 -6.09 16 4 C -0.04 -0.03 6.21 -35.51 -0.22 -0.25 16 5 C -0.17 -0.10 10.78 -39.82 -0.43 -0.53 16 6 C -0.18 -0.03 10.26 -39.38 -0.40 -0.43 16 7 C 0.02 0.02 7.02 -36.54 -0.26 -0.23 16 8 C 0.03 0.01 5.87 -104.95 -0.62 -0.60 16 9 C -0.14 -0.12 9.65 -39.05 -0.38 -0.50 16 10 C 0.18 0.32 6.71 -38.75 -0.26 0.06 16 11 O -0.47 -1.15 11.56 -40.70 -0.47 -1.62 16 12 C -0.17 -0.18 5.89 -104.79 -0.62 -0.80 16 13 C 0.56 1.28 7.75 -12.58 -0.10 1.18 16 14 O -0.52 -2.98 14.74 -16.71 -0.25 -3.22 16 15 N -0.71 0.46 5.21 -54.13 -0.28 0.18 16 16 C 0.12 -0.14 4.32 -67.12 -0.29 -0.43 16 17 H 0.11 0.06 7.46 -51.93 -0.39 -0.33 16 18 C -0.14 0.46 7.39 -25.92 -0.19 0.26 16 19 C -0.12 0.29 3.74 -89.81 -0.34 -0.05 16 20 H 0.10 -0.09 7.97 -51.93 -0.41 -0.50 16 21 C 0.14 -0.32 6.35 -4.04 -0.03 -0.35 16 22 N -0.37 -0.26 3.68 -61.36 -0.23 -0.48 16 23 C 0.05 0.00 11.45 -17.23 -0.20 -0.20 16 24 C -0.28 -0.20 10.80 -40.01 -0.43 -0.63 16 25 C 0.04 0.07 12.02 -17.37 -0.21 -0.14 16 26 N -0.30 -0.84 12.28 30.63 0.38 -0.47 16 27 C -0.15 0.22 7.43 -25.92 -0.19 0.03 16 28 C -0.06 0.09 9.47 -39.62 -0.38 -0.29 16 29 C -0.12 0.15 9.48 -39.60 -0.38 -0.23 16 30 O -0.16 -0.21 8.79 4.72 0.04 -0.17 16 31 H 0.38 -1.59 8.70 45.56 0.40 -1.20 16 32 H 0.13 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H -0.25 -0.50 7.11 56.52 0.40 -0.10 16 34 H -0.25 -0.37 7.11 56.52 0.40 0.03 16 35 H 0.16 -0.09 8.06 -52.48 -0.42 -0.51 16 36 H 0.16 -0.34 7.24 -52.49 -0.38 -0.72 16 37 H 0.14 0.01 7.90 -52.49 -0.41 -0.40 16 38 H 0.40 -0.49 9.06 45.56 0.41 -0.08 16 39 H 0.40 -1.15 6.71 -40.82 -0.27 -1.42 16 40 H 0.10 -0.45 8.10 -51.93 -0.42 -0.88 16 41 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 42 H 0.10 -0.43 7.78 -51.93 -0.40 -0.83 16 43 H 0.09 -0.22 8.14 -51.93 -0.42 -0.65 16 44 H 0.17 -0.55 8.06 -52.49 -0.42 -0.97 16 45 H 0.15 -0.14 8.06 -52.49 -0.42 -0.57 16 46 H 0.18 -0.18 8.06 -52.48 -0.42 -0.61 16 47 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 48 H 0.09 -0.23 7.90 -51.93 -0.41 -0.64 16 49 H 0.14 -0.57 6.38 -52.49 -0.33 -0.90 16 50 H 0.14 -0.48 6.95 -52.48 -0.36 -0.85 16 LS Contribution 427.81 15.07 6.45 6.45 Total: 0.00 -11.73 427.81 -11.63 -23.36 By element: Atomic # 1 Polarization: -8.20 SS G_CDS: -5.57 Total: -13.76 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -5.80 Total: -3.98 kcal Atomic # 7 Polarization: -0.63 SS G_CDS: -0.13 Total: -0.77 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -1.13 Total: -5.21 kcal Atomic # 14 Polarization: -0.63 SS G_CDS: -5.46 Total: -6.09 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -11.73 -11.63 -23.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.006 kcal (2) G-P(sol) polarization free energy of solvation -11.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds