Wall clock time and date at job start Sun Mar 7 2021 04:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.46668 * 2 1 4 4 C 1.50703 * 109.47270 * 119.99792 * 2 1 3 5 5 C 1.34832 * 125.65080 * 65.27787 * 4 2 1 6 6 C 1.40795 * 107.04964 * 180.14040 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.60553 * 6 5 4 8 8 C 1.47569 * 125.94733 * 180.24168 * 7 6 5 9 9 C 1.39563 * 119.95441 * 179.72557 * 8 7 6 10 10 C 1.38327 * 119.80855 * 179.72634 * 9 8 7 11 11 O 1.35679 * 120.13412 * 180.25063 * 10 9 8 12 12 C 1.40365 * 119.72357 * 0.52645 * 10 9 8 13 13 C 1.47293 * 120.04235 * 179.72549 * 12 10 9 14 14 O 1.21628 * 120.00434 * 0.02562 * 13 12 10 15 15 N 1.34781 * 119.99895 * 180.02562 * 13 12 10 16 16 C 1.46499 * 120.00040 * 180.02562 * 15 13 12 17 17 H 1.09003 * 112.85285 * 23.79950 * 16 15 13 18 18 C 1.53780 * 113.61399 * 154.99618 * 16 15 13 19 19 C 1.53780 * 87.07822 * 89.11766 * 18 16 15 20 20 H 1.09002 * 113.61259 * 270.87839 * 19 18 16 21 21 C 1.53005 * 113.61628 * 140.06747 * 19 18 16 22 22 N 1.46500 * 109.47450 * 174.99874 * 21 19 18 23 23 C 1.34941 * 126.03788 * 124.99669 * 22 21 19 24 24 C 1.35319 * 107.74706 * 179.97438 * 23 22 21 25 25 C 1.39868 * 107.91491 * 359.97438 * 24 23 22 26 26 N 1.30832 * 108.20770 * 359.74373 * 25 24 23 27 27 C 1.53776 * 87.08393 * 25.43325 * 19 18 16 28 28 C 1.39916 * 119.91036 * 359.74834 * 12 10 9 29 29 C 1.36384 * 120.18427 * 359.97438 * 28 12 10 30 30 O 1.34226 * 125.65142 * 244.97755 * 4 2 1 31 31 H 0.96702 * 114.00045 * 299.99625 * 1 2 3 32 32 H 1.08995 * 109.47274 * 240.00498 * 2 1 3 33 33 H 1.48501 * 109.99680 * 178.68070 * 3 2 1 34 34 H 1.48500 * 110.00258 * 299.99759 * 3 2 1 35 35 H 1.08005 * 126.47494 * 0.02562 * 5 4 2 36 36 H 1.08002 * 126.63743 * 179.87482 * 6 5 4 37 37 H 1.08001 * 120.09577 * 359.97438 * 9 8 7 38 38 H 0.96699 * 113.99887 * 270.27898 * 11 10 9 39 39 H 0.96996 * 120.00007 * 359.97438 * 15 13 12 40 40 H 1.09004 * 113.61389 * 203.66453 * 18 16 15 41 41 H 1.08999 * 113.61788 * 334.48580 * 18 16 15 42 42 H 1.09001 * 109.46631 * 294.99572 * 21 19 18 43 43 H 1.09005 * 109.47068 * 54.99317 * 21 19 18 44 44 H 1.07999 * 126.12677 * 0.02562 * 23 22 21 45 45 H 1.07999 * 126.04529 * 180.02562 * 24 23 22 46 46 H 1.08010 * 125.89391 * 180.02562 * 25 24 23 47 47 H 1.09003 * 113.61427 * 220.02415 * 27 19 18 48 48 H 1.08996 * 113.61984 * 89.11692 * 27 19 18 49 49 H 1.07994 * 119.90697 * 179.97438 * 28 12 10 50 50 H 1.08003 * 119.86323 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7613 -2.0191 1.5069 6 6 2.3804 -2.2628 2.7477 7 6 2.9081 -1.0784 3.1617 8 6 3.6576 -0.8541 4.4130 9 6 4.1502 0.4170 4.7119 10 6 4.8474 0.6251 5.8884 11 8 5.3248 1.8592 6.1880 12 6 5.0639 -0.4471 6.7680 13 6 5.8106 -0.2348 8.0198 14 8 6.2397 0.8702 8.2920 15 7 6.0184 -1.2650 8.8636 16 6 6.7606 -1.0538 10.1088 17 1 6.7339 -0.0179 10.4470 18 6 6.4175 -2.0704 11.2105 19 6 7.5346 -2.9552 10.6324 20 1 7.1939 -3.6323 9.8490 21 6 8.3749 -3.6577 11.7008 22 7 9.3281 -4.5635 11.0549 23 6 10.6664 -4.5620 11.2273 24 6 11.1825 -5.5484 10.4580 25 6 10.1230 -6.1745 9.7932 26 7 9.0104 -5.5887 10.1547 27 6 8.1724 -1.6631 10.0955 28 6 4.5698 -1.7179 6.4540 29 6 3.8780 -1.9177 5.2957 30 8 2.6271 -0.1463 2.2302 31 1 -0.3933 0.4417 0.7651 32 1 1.7923 -0.5137 -0.8900 33 1 3.5345 1.7704 0.0321 34 1 1.5614 2.4680 -1.2085 35 1 1.2459 -2.7432 0.8933 36 1 2.4310 -3.2078 3.2682 37 1 3.9841 1.2367 4.0286 38 1 6.2179 2.0265 5.8570 39 1 5.6759 -2.1462 8.6467 40 1 6.6241 -1.7089 12.2179 41 1 5.4215 -2.5020 11.1116 42 1 8.9182 -2.9134 12.2830 43 1 7.7209 -4.2283 12.3603 44 1 11.2255 -3.8938 11.8656 45 1 12.2276 -5.8072 10.3730 46 1 10.2083 -7.0019 9.1042 47 1 8.5937 -1.7669 9.0955 48 1 8.8587 -1.1902 10.7979 49 1 4.7367 -2.5429 7.1306 50 1 3.4986 -2.9007 5.0587 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:33 Heat of formation + Delta-G solvation = 55.010593 kcal Electronic energy + Delta-G solvation = -35221.948539 eV Core-core repulsion = 30379.030878 eV Total energy + Delta-G solvation = -4842.917660 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.156 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.76608 -42.08500 -41.69411 -40.51848 -39.05953 -38.10205 -37.84256 -35.15216 -34.28696 -33.82710 -32.91153 -31.33390 -30.97557 -30.48676 -28.55261 -27.06412 -26.72918 -24.88516 -24.14733 -23.90971 -22.55649 -22.16332 -21.93327 -21.59378 -21.40064 -20.20908 -19.69146 -18.91175 -18.54982 -18.11944 -17.69774 -17.51579 -17.29054 -16.68970 -16.61320 -16.34907 -16.20437 -15.98080 -15.77458 -15.68146 -15.40911 -15.24654 -14.76381 -14.57710 -14.42260 -14.33811 -14.21043 -14.01519 -13.89670 -13.85071 -13.63114 -13.59642 -13.47778 -13.44133 -12.84200 -12.76466 -12.74035 -12.27041 -12.21108 -11.94241 -11.63929 -11.55889 -11.32442 -11.16005 -10.98920 -10.75595 -10.60402 -10.30744 -10.14066 -9.98679 -9.45363 -9.04511 -5.05649 -0.83145 0.11053 0.61371 1.02342 1.12145 1.37410 1.43254 1.68663 1.72473 1.85471 1.87906 1.97004 1.98214 2.59779 2.98629 3.26643 3.39226 3.40294 3.50999 3.52900 3.57523 3.62502 3.81154 3.85087 3.95412 3.97028 3.99233 4.10313 4.18123 4.23155 4.29470 4.36714 4.42035 4.53087 4.59309 4.65710 4.67599 4.71673 4.74613 4.76468 4.81767 4.87121 4.92670 4.97072 5.02519 5.05684 5.08001 5.15740 5.17967 5.18804 5.39817 5.48873 5.54919 5.77468 5.94198 6.20209 6.40462 6.58198 6.66515 6.80042 7.10671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.024 4.024 3 Si 0.768 3.232 4 C -0.052 4.052 5 C -0.184 4.184 6 C -0.173 4.173 7 C 0.005 3.995 8 C 0.027 3.973 9 C -0.151 4.151 10 C 0.162 3.838 11 O -0.493 6.493 12 C -0.181 4.181 13 C 0.558 3.442 14 O -0.561 6.561 15 N -0.699 5.699 16 C 0.113 3.887 17 H 0.090 0.910 18 C -0.120 4.120 19 C -0.113 4.113 20 H 0.089 0.911 21 C 0.135 3.865 22 N -0.373 5.373 23 C 0.051 3.949 24 C -0.295 4.295 25 C 0.029 3.971 26 N -0.333 5.333 27 C -0.142 4.142 28 C -0.053 4.053 29 C -0.111 4.111 30 O -0.173 6.173 31 H 0.399 0.601 32 H 0.139 0.861 33 H -0.295 1.295 34 H -0.277 1.277 35 H 0.166 0.834 36 H 0.181 0.819 37 H 0.143 0.857 38 H 0.408 0.592 39 H 0.412 0.588 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.124 0.876 43 H 0.093 0.907 44 H 0.203 0.797 45 H 0.158 0.842 46 H 0.195 0.805 47 H 0.049 0.951 48 H 0.105 0.895 49 H 0.166 0.834 50 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.055 -3.851 3.567 5.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.135 4.135 3 Si 0.673 3.327 4 C -0.102 4.102 5 C -0.203 4.203 6 C -0.191 4.191 7 C -0.044 4.044 8 C 0.026 3.974 9 C -0.169 4.169 10 C 0.116 3.884 11 O -0.306 6.306 12 C -0.184 4.184 13 C 0.347 3.653 14 O -0.440 6.440 15 N -0.351 5.351 16 C 0.007 3.993 17 H 0.108 0.892 18 C -0.158 4.158 19 C -0.132 4.132 20 H 0.108 0.892 21 C 0.015 3.985 22 N -0.155 5.155 23 C -0.095 4.095 24 C -0.324 4.324 25 C -0.157 4.157 26 N -0.155 5.155 27 C -0.181 4.181 28 C -0.071 4.071 29 C -0.128 4.128 30 O -0.071 6.071 31 H 0.250 0.750 32 H 0.156 0.844 33 H -0.222 1.222 34 H -0.203 1.203 35 H 0.183 0.817 36 H 0.198 0.802 37 H 0.160 0.840 38 H 0.268 0.732 39 H 0.250 0.750 40 H 0.138 0.862 41 H 0.106 0.894 42 H 0.142 0.858 43 H 0.111 0.889 44 H 0.219 0.781 45 H 0.175 0.825 46 H 0.212 0.788 47 H 0.068 0.932 48 H 0.123 0.877 49 H 0.183 0.817 50 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.008 -2.265 3.048 3.929 hybrid contribution 1.490 -1.016 -0.709 1.938 sum 0.482 -3.281 2.339 4.059 Atomic orbital electron populations 1.86532 1.15896 1.82092 1.50331 1.24428 0.85412 1.10963 0.92703 0.93335 0.78172 0.75828 0.85397 1.23245 1.00454 0.94266 0.92250 1.21836 1.04257 0.95803 0.98431 1.22239 1.00907 0.98952 0.97048 1.20548 1.04612 0.87946 0.91304 1.17932 0.95291 0.93949 0.90217 1.21603 1.00833 0.97709 0.96791 1.18473 0.94603 0.84111 0.91217 1.84727 1.37245 1.28367 1.80301 1.20521 1.05556 0.95357 0.97000 1.18223 0.79138 0.84237 0.83703 1.90816 1.51950 1.25201 1.76021 1.45504 1.56475 1.12182 1.20922 1.21877 0.92349 1.00439 0.84626 0.89225 1.23314 0.99061 0.94472 0.98994 1.22811 0.96806 0.95320 0.98283 0.89231 1.22064 0.91041 0.91149 0.94238 1.48954 1.05996 1.25930 1.34663 1.23145 0.84668 1.00665 1.01052 1.21853 1.01329 1.02843 1.06402 1.24295 0.90262 1.00644 1.00451 1.77229 1.24689 1.03340 1.10245 1.23508 0.96681 0.96261 1.01624 1.21115 0.94132 0.95100 0.96793 1.21031 0.99358 0.99440 0.92999 1.83922 1.57880 1.38449 1.26837 0.74997 0.84410 1.22185 1.20292 0.81674 0.80213 0.83958 0.73179 0.75037 0.86180 0.89408 0.85780 0.88913 0.78061 0.82452 0.78788 0.93204 0.87683 0.81657 0.81487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.76 12.88 -148.98 -1.92 -1.16 16 2 C -0.02 0.03 2.98 71.24 0.21 0.24 16 3 Si 0.77 -0.55 32.11 68.60 2.20 1.65 16 4 C -0.05 -0.06 6.21 24.90 0.15 0.09 16 5 C -0.18 -0.07 10.78 22.11 0.24 0.17 16 6 C -0.17 0.15 10.26 22.40 0.23 0.38 16 7 C 0.01 0.01 7.02 24.24 0.17 0.18 16 8 C 0.03 0.02 5.87 -20.08 -0.12 -0.09 16 9 C -0.15 -0.50 9.65 22.61 0.22 -0.28 16 10 C 0.16 0.88 6.71 22.81 0.15 1.03 16 11 O -0.49 -3.75 11.56 -68.97 -0.80 -4.55 16 12 C -0.18 -0.55 5.89 -19.97 -0.12 -0.67 16 13 C 0.56 3.30 7.75 86.62 0.67 3.97 16 14 O -0.56 -7.83 14.74 16.88 0.25 -7.58 16 15 N -0.70 0.67 5.21 -443.41 -2.31 -1.64 16 16 C 0.11 -0.22 4.32 45.52 0.20 -0.02 16 17 H 0.09 0.20 7.46 -2.39 -0.02 0.19 16 18 C -0.12 0.95 7.39 31.12 0.23 1.18 16 19 C -0.11 0.62 3.74 -10.27 -0.04 0.58 16 20 H 0.09 -0.18 7.97 -2.39 -0.02 -0.20 16 21 C 0.14 -0.80 6.35 86.38 0.55 -0.25 16 22 N -0.37 -0.27 3.68 -348.05 -1.28 -1.55 16 23 C 0.05 -0.05 11.45 83.54 0.96 0.90 16 24 C -0.29 -0.37 10.80 21.99 0.24 -0.13 16 25 C 0.03 0.10 12.02 85.24 1.02 1.13 16 26 N -0.33 -1.95 12.28 -57.02 -0.70 -2.65 16 27 C -0.14 0.43 7.43 31.12 0.23 0.66 16 28 C -0.05 0.19 9.47 22.24 0.21 0.41 16 29 C -0.11 0.42 9.48 22.25 0.21 0.63 16 30 O -0.17 -0.56 8.79 -6.02 -0.05 -0.61 16 31 H 0.40 -3.52 8.70 -74.06 -0.64 -4.17 16 32 H 0.14 -0.31 7.96 -2.39 -0.02 -0.33 16 33 H -0.29 -1.84 7.11 99.48 0.71 -1.14 16 34 H -0.28 -1.21 7.11 99.48 0.71 -0.51 16 35 H 0.17 -0.37 8.06 -2.91 -0.02 -0.39 16 36 H 0.18 -1.21 7.24 -2.91 -0.02 -1.23 16 37 H 0.14 0.37 7.90 -2.91 -0.02 0.34 16 38 H 0.41 0.29 9.06 -74.06 -0.67 -0.38 16 39 H 0.41 -2.61 6.71 -92.71 -0.62 -3.23 16 40 H 0.12 -1.35 8.10 -2.38 -0.02 -1.37 16 41 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 42 H 0.12 -1.40 7.78 -2.39 -0.02 -1.42 16 43 H 0.09 -0.63 8.14 -2.38 -0.02 -0.65 16 44 H 0.20 -1.70 8.06 -2.91 -0.02 -1.73 16 45 H 0.16 -0.35 8.06 -2.91 -0.02 -0.37 16 46 H 0.20 -0.27 8.06 -2.91 -0.02 -0.29 16 47 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 48 H 0.10 -0.58 7.90 -2.39 -0.02 -0.60 16 49 H 0.17 -1.73 6.38 -2.91 -0.02 -1.75 16 50 H 0.17 -1.63 6.95 -2.91 -0.02 -1.65 16 Total: 0.00 -29.69 427.81 0.14 -29.55 By element: Atomic # 1 Polarization: -20.70 SS G_CDS: -0.87 Total: -21.57 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 5.62 Total: 10.10 kcal Atomic # 7 Polarization: -1.55 SS G_CDS: -4.29 Total: -5.84 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -2.52 Total: -13.89 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: 2.20 Total: 1.65 kcal Total: -29.69 0.14 -29.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.562 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds